data_1SVE # _model_server_result.job_id 2qO4hw784Wq5rJANYZuZgg _model_server_result.datetime_utc '2024-12-22 02:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1SVE # _exptl.entry_id 1SVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SVE _cell.length_a 74.24 _cell.length_b 76.32 _cell.length_c 79.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 9 A GLY 9 1_555 A N SEP 10 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 10 A SEP 10 1_555 A N GLU 11 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A O1P SEP 10 A SEP 10 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SVE _atom_sites.fract_transf_matrix[1][1] 0.01347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 900 900 NA NA . D 4 I01 A 1 351 351 I01 I01 . E 5 MG8 A 1 901 300 MG8 MG8 . F 6 HOH A 1 902 2 HOH HOH . F 6 HOH A 2 903 4 HOH HOH . F 6 HOH A 3 904 6 HOH HOH . F 6 HOH A 4 905 8 HOH HOH . F 6 HOH A 5 906 9 HOH HOH . F 6 HOH A 6 907 11 HOH HOH . F 6 HOH A 7 908 12 HOH HOH . F 6 HOH A 8 909 13 HOH HOH . F 6 HOH A 9 910 16 HOH HOH . F 6 HOH A 10 911 22 HOH HOH . F 6 HOH A 11 912 27 HOH HOH . F 6 HOH A 12 913 30 HOH HOH . F 6 HOH A 13 914 32 HOH HOH . F 6 HOH A 14 915 34 HOH HOH . F 6 HOH A 15 916 36 HOH HOH . F 6 HOH A 16 917 37 HOH HOH . F 6 HOH A 17 918 39 HOH HOH . F 6 HOH A 18 919 40 HOH HOH . F 6 HOH A 19 920 48 HOH HOH . F 6 HOH A 20 921 50 HOH HOH . F 6 HOH A 21 922 53 HOH HOH . F 6 HOH A 22 923 54 HOH HOH . F 6 HOH A 23 924 55 HOH HOH . F 6 HOH A 24 925 57 HOH HOH . F 6 HOH A 25 926 59 HOH HOH . F 6 HOH A 26 927 101 HOH HOH . F 6 HOH A 27 928 108 HOH HOH . F 6 HOH A 28 929 109 HOH HOH . F 6 HOH A 29 930 113 HOH HOH . F 6 HOH A 30 931 115 HOH HOH . F 6 HOH A 31 932 123 HOH HOH . F 6 HOH A 32 933 127 HOH HOH . F 6 HOH A 33 934 162 HOH HOH . F 6 HOH A 34 935 281 HOH HOH . F 6 HOH A 35 936 232 HOH HOH . F 6 HOH A 36 937 239 HOH HOH . F 6 HOH A 37 938 242 HOH HOH . F 6 HOH A 38 939 250 HOH HOH . F 6 HOH A 39 940 259 HOH HOH . F 6 HOH A 40 941 264 HOH HOH . F 6 HOH A 41 942 265 HOH HOH . F 6 HOH A 42 943 266 HOH HOH . F 6 HOH A 43 944 294 HOH HOH . F 6 HOH A 44 945 216 HOH HOH . F 6 HOH A 45 946 233 HOH HOH . F 6 HOH A 46 947 234 HOH HOH . F 6 HOH A 47 948 237 HOH HOH . F 6 HOH A 48 949 238 HOH HOH . F 6 HOH A 49 950 445 HOH HOH . F 6 HOH A 50 951 450 HOH HOH . F 6 HOH A 51 952 454 HOH HOH . F 6 HOH A 52 953 515 HOH HOH . F 6 HOH A 53 954 517 HOH HOH . F 6 HOH A 54 955 519 HOH HOH . F 6 HOH A 55 956 523 HOH HOH . F 6 HOH A 56 957 529 HOH HOH . F 6 HOH A 57 958 531 HOH HOH . F 6 HOH A 58 959 532 HOH HOH . F 6 HOH A 59 960 536 HOH HOH . F 6 HOH A 60 961 540 HOH HOH . F 6 HOH A 61 962 551 HOH HOH . F 6 HOH A 62 963 566 HOH HOH . F 6 HOH A 63 964 599 HOH HOH . F 6 HOH A 64 965 579 HOH HOH . F 6 HOH A 65 966 644 HOH HOH . F 6 HOH A 66 967 669 HOH HOH . F 6 HOH A 67 968 710 HOH HOH . F 6 HOH A 68 969 712 HOH HOH . F 6 HOH A 69 970 714 HOH HOH . F 6 HOH A 70 971 716 HOH HOH . F 6 HOH A 71 972 718 HOH HOH . F 6 HOH A 72 973 808 HOH HOH . F 6 HOH A 73 974 809 HOH HOH . F 6 HOH A 74 975 810 HOH HOH . F 6 HOH A 75 976 814 HOH HOH . F 6 HOH A 76 977 816 HOH HOH . F 6 HOH A 77 978 820 HOH HOH . F 6 HOH A 78 979 821 HOH HOH . F 6 HOH A 79 980 824 HOH HOH . F 6 HOH A 80 981 826 HOH HOH . F 6 HOH A 81 982 828 HOH HOH . F 6 HOH A 82 983 829 HOH HOH . F 6 HOH A 83 984 830 HOH HOH . F 6 HOH A 84 985 831 HOH HOH . F 6 HOH A 85 986 832 HOH HOH . F 6 HOH A 86 987 834 HOH HOH . F 6 HOH A 87 988 836 HOH HOH . F 6 HOH A 88 989 838 HOH HOH . F 6 HOH A 89 990 839 HOH HOH . G 6 HOH B 1 25 1 HOH HOH . G 6 HOH B 2 26 5 HOH HOH . G 6 HOH B 3 27 14 HOH HOH . G 6 HOH B 4 28 19 HOH HOH . G 6 HOH B 5 29 116 HOH HOH . G 6 HOH B 6 30 120 HOH HOH . G 6 HOH B 7 31 439 HOH HOH . G 6 HOH B 8 32 658 HOH HOH . G 6 HOH B 9 33 811 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.675 _atom_site.Cartn_y -22.337 _atom_site.Cartn_z -15.489 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 900 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #