data_1SVU # _model_server_result.job_id rm74JzfpHe90d5kMqy5c6A _model_server_result.datetime_utc '2025-03-05 20:12:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1svu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 1SVU # _exptl.entry_id 1SVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121 _cell.angle_gamma 90 _cell.entry_id 1SVU _cell.length_a 155 _cell.length_b 47 _cell.length_c 122.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 N N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1SVU _atom_sites.fract_transf_matrix[1][1] 0.006452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003877 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 600 600 SO4 SO4 . D 2 SO4 A 1 601 601 SO4 SO4 . E 3 SAH A 1 401 1 SAH SAH . F 4 UNX A 1 602 9 UNX UNK . G 4 UNX A 1 603 10 UNX UNK . H 4 UNX A 1 604 23 UNX UNK . I 4 UNX A 1 605 25 UNX UNK . J 4 UNX A 1 606 27 UNX UNK . K 4 UNX A 1 607 28 UNX UNK . L 4 UNX A 1 608 35 UNX UNK . M 4 UNX A 1 609 36 UNX UNK . N 3 SAH B 1 402 2 SAH SAH . O 4 UNX B 1 403 1 UNX UNK . P 4 UNX B 1 404 2 UNX UNK . Q 4 UNX B 1 405 6 UNX UNK . R 4 UNX B 1 406 12 UNX UNK . S 4 UNX B 1 407 13 UNX UNK . T 4 UNX B 1 408 29 UNX UNK . U 4 UNX B 1 409 30 UNX UNK . V 4 UNX B 1 410 41 UNX UNK . W 4 UNX B 1 411 42 UNX UNK . X 5 HOH A 1 610 7 HOH HOH . X 5 HOH A 2 611 8 HOH HOH . X 5 HOH A 3 612 19 HOH HOH . X 5 HOH A 4 613 21 HOH HOH . X 5 HOH A 5 614 22 HOH HOH . X 5 HOH A 6 615 24 HOH HOH . X 5 HOH A 7 616 26 HOH HOH . X 5 HOH A 8 617 34 HOH HOH . X 5 HOH A 9 618 37 HOH HOH . X 5 HOH A 10 619 38 HOH HOH . X 5 HOH A 11 620 40 HOH HOH . Y 5 HOH B 1 412 3 HOH HOH . Y 5 HOH B 2 413 4 HOH HOH . Y 5 HOH B 3 414 5 HOH HOH . Y 5 HOH B 4 415 11 HOH HOH . Y 5 HOH B 5 416 14 HOH HOH . Y 5 HOH B 6 417 15 HOH HOH . Y 5 HOH B 7 418 16 HOH HOH . Y 5 HOH B 8 419 17 HOH HOH . Y 5 HOH B 9 420 18 HOH HOH . Y 5 HOH B 10 421 20 HOH HOH . Y 5 HOH B 11 422 31 HOH HOH . Y 5 HOH B 12 423 32 HOH HOH . Y 5 HOH B 13 424 33 HOH HOH . Y 5 HOH B 14 425 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 3 19.222 -3.315 10.602 1 39.51 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . E 3 19.724 -3.464 11.969 1 39.17 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . E 3 20.991 -4.334 11.929 1 38.98 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . E 3 20.732 -5.835 12.108 1 40.7 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . E 3 21.746 -6.892 13.206 1 38.5 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . E 3 20.019 -2.134 12.665 1 38.42 ? C SAH 401 A 1 HETATM 7 O O SAH . . . E 3 19.446 -1.031 12.258 1 38.51 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . E 3 20.725 -2.154 13.76 1 39.27 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . E 3 20.705 -8.374 13.021 1 40.05 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . E 3 19.668 -8.049 14.066 1 39.61 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . E 3 18.645 -9.085 14.114 1 38.34 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . E 3 20.203 -7.908 15.484 1 38.73 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . E 3 19.531 -6.842 16.131 1 41.01 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . E 3 19.84 -9.247 16.116 1 40.75 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . E 3 19.688 -9.187 17.52 1 41.01 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . E 3 18.506 -9.549 15.441 1 40.76 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . E 3 18.153 -10.969 15.395 1 44.24 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . E 3 18.979 -12.043 15.149 1 46.18 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . E 3 18.357 -13.197 15.137 1 45.91 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . E 3 17.032 -12.864 15.392 1 45.72 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . E 3 15.864 -13.642 15.488 1 45.21 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . E 3 15.843 -14.967 15.301 1 46.9 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . E 3 14.705 -13.006 15.776 1 42.47 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . E 3 14.73 -11.678 15.937 1 44.09 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . E 3 15.761 -10.835 15.856 1 44.77 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . E 3 16.896 -11.498 15.574 1 45.43 ? C4 SAH 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #