data_1SVU
#
_model_server_result.job_id            Tzx9cwjOHrV3nKa7geOF4Q 
_model_server_result.datetime_utc      '2025-03-05 20:00:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1svu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":402}' 
#
_entry.id    1SVU 
#
_exptl.entry_id    1SVU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121 
_cell.angle_gamma         90 
_cell.entry_id            1SVU 
_cell.length_a            155 
_cell.length_b            47 
_cell.length_c            122.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SVU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 
B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 N N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     1SVU 
_atom_sites.fract_transf_matrix[1][1]    0.006452 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003877 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 600 600 SO4 SO4 . 
D 2 SO4 A 1 601 601 SO4 SO4 . 
E 3 SAH A 1 401 1 SAH SAH . 
F 4 UNX A 1 602 9 UNX UNK . 
G 4 UNX A 1 603 10 UNX UNK . 
H 4 UNX A 1 604 23 UNX UNK . 
I 4 UNX A 1 605 25 UNX UNK . 
J 4 UNX A 1 606 27 UNX UNK . 
K 4 UNX A 1 607 28 UNX UNK . 
L 4 UNX A 1 608 35 UNX UNK . 
M 4 UNX A 1 609 36 UNX UNK . 
N 3 SAH B 1 402 2 SAH SAH . 
O 4 UNX B 1 403 1 UNX UNK . 
P 4 UNX B 1 404 2 UNX UNK . 
Q 4 UNX B 1 405 6 UNX UNK . 
R 4 UNX B 1 406 12 UNX UNK . 
S 4 UNX B 1 407 13 UNX UNK . 
T 4 UNX B 1 408 29 UNX UNK . 
U 4 UNX B 1 409 30 UNX UNK . 
V 4 UNX B 1 410 41 UNX UNK . 
W 4 UNX B 1 411 42 UNX UNK . 
X 5 HOH A 1 610 7 HOH HOH . 
X 5 HOH A 2 611 8 HOH HOH . 
X 5 HOH A 3 612 19 HOH HOH . 
X 5 HOH A 4 613 21 HOH HOH . 
X 5 HOH A 5 614 22 HOH HOH . 
X 5 HOH A 6 615 24 HOH HOH . 
X 5 HOH A 7 616 26 HOH HOH . 
X 5 HOH A 8 617 34 HOH HOH . 
X 5 HOH A 9 618 37 HOH HOH . 
X 5 HOH A 10 619 38 HOH HOH . 
X 5 HOH A 11 620 40 HOH HOH . 
Y 5 HOH B 1 412 3 HOH HOH . 
Y 5 HOH B 2 413 4 HOH HOH . 
Y 5 HOH B 3 414 5 HOH HOH . 
Y 5 HOH B 4 415 11 HOH HOH . 
Y 5 HOH B 5 416 14 HOH HOH . 
Y 5 HOH B 6 417 15 HOH HOH . 
Y 5 HOH B 7 418 16 HOH HOH . 
Y 5 HOH B 8 419 17 HOH HOH . 
Y 5 HOH B 9 420 18 HOH HOH . 
Y 5 HOH B 10 421 20 HOH HOH . 
Y 5 HOH B 11 422 31 HOH HOH . 
Y 5 HOH B 12 423 32 HOH HOH . 
Y 5 HOH B 13 424 33 HOH HOH . 
Y 5 HOH B 14 425 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . N 3 1.075 22.603 -34.242 1 37.5 ? N SAH 402 B 1 
HETATM 2 C CA SAH . . . N 3 -0.207 23.23 -34.431 1 37.76 ? CA SAH 402 B 1 
HETATM 3 C CB SAH . . . N 3 -0.516 23.378 -35.924 1 40.77 ? CB SAH 402 B 1 
HETATM 4 C CG SAH . . . N 3 0.337 24.425 -36.642 1 40.27 ? CG SAH 402 B 1 
HETATM 5 S SD SAH . . . N 3 1.059 24.046 -38.278 1 38.85 ? SD SAH 402 B 1 
HETATM 6 C C SAH . . . N 3 -1.246 22.335 -33.771 1 38.28 ? C SAH 402 B 1 
HETATM 7 O O SAH . . . N 3 -0.816 21.269 -33.149 1 38.61 ? O SAH 402 B 1 
HETATM 8 O OXT SAH . . . N 3 -2.512 22.622 -33.931 1 37.57 ? OXT SAH 402 B 1 
HETATM 9 C C5' SAH . . . N 3 2.031 25.433 -38.979 1 37.37 ? C5' SAH 402 B 1 
HETATM 10 C C4' SAH . . . N 3 1.615 26.529 -38.038 1 36.1 ? C4' SAH 402 B 1 
HETATM 11 O O4' SAH . . . N 3 2.613 27.58 -38.017 1 35.59 ? O4' SAH 402 B 1 
HETATM 12 C C3' SAH . . . N 3 0.289 27.211 -38.366 1 35.79 ? C3' SAH 402 B 1 
HETATM 13 O O3' SAH . . . N 3 -0.499 27.301 -37.191 1 32.08 ? O3' SAH 402 B 1 
HETATM 14 C C2' SAH . . . N 3 0.725 28.601 -38.818 1 35.17 ? C2' SAH 402 B 1 
HETATM 15 O O2' SAH . . . N 3 -0.243 29.587 -38.548 1 37.71 ? O2' SAH 402 B 1 
HETATM 16 C C1' SAH . . . N 3 1.951 28.816 -37.947 1 35.91 ? C1' SAH 402 B 1 
HETATM 17 N N9 SAH . . . N 3 2.853 29.861 -38.418 1 38.62 ? N9 SAH 402 B 1 
HETATM 18 C C8 SAH . . . N 3 3.634 29.878 -39.548 1 37.91 ? C8 SAH 402 B 1 
HETATM 19 N N7 SAH . . . N 3 4.348 30.97 -39.68 1 38.34 ? N7 SAH 402 B 1 
HETATM 20 C C5 SAH . . . N 3 4.014 31.726 -38.562 1 38.69 ? C5 SAH 402 B 1 
HETATM 21 C C6 SAH . . . N 3 4.429 32.998 -38.114 1 37.97 ? C6 SAH 402 B 1 
HETATM 22 N N6 SAH . . . N 3 5.31 33.763 -38.762 1 37.8 ? N6 SAH 402 B 1 
HETATM 23 N N1 SAH . . . N 3 3.903 33.461 -36.959 1 38.01 ? N1 SAH 402 B 1 
HETATM 24 C C2 SAH . . . N 3 3.017 32.699 -36.308 1 37.85 ? C2 SAH 402 B 1 
HETATM 25 N N3 SAH . . . N 3 2.546 31.494 -36.628 1 38.54 ? N3 SAH 402 B 1 
HETATM 26 C C4 SAH . . . N 3 3.091 31.059 -37.779 1 38.87 ? C4 SAH 402 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#