data_1SVW # _model_server_result.job_id QIUA69fN3csO_Oc60aetIw _model_server_result.datetime_utc '2024-11-14 21:48:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1svw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1SVW # _exptl.entry_id 1SVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.26 _cell.angle_gamma 90 _cell.entry_id 1SVW _cell.length_a 43.586 _cell.length_b 70.599 _cell.length_c 72.583 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 37 A SER 37 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc2 A OD2 ASP 75 A ASP 75 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc3 A O VAL 76 A VAL 76 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc4 C MG MG . A MG 300 1_555 D O2B GTP . A GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc5 C MG MG . A MG 300 1_555 D O3G GTP . A GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc6 B OG SER 37 B SER 37 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 B OG1 THR 59 B THR 59 1_555 E MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 E MG MG . B MG 301 1_555 F O2B GTP . B GTP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc9 E MG MG . B MG 301 1_555 F O3G GTP . B GTP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 1SVW _atom_sites.fract_transf_matrix[1][1] 0.022943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004986 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 300 300 MG MG2 . D 3 GTP A 1 401 401 GTP GTP . E 2 MG B 1 301 301 MG MG2 . F 3 GTP B 1 402 401 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 3 13.497 59.144 47.978 1 18.75 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . D 3 13.508 57.654 48.24 1 18.75 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . D 3 14.376 59.571 46.816 1 18.75 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . D 3 13.747 59.863 49.234 1 18.75 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . D 3 11.93 59.407 47.539 1 18.75 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . D 3 10.512 59.247 48.338 1 18.75 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . D 3 10.038 57.847 48.079 1 18.75 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . D 3 10.696 59.605 49.728 1 18.75 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . D 3 9.716 60.324 47.58 1 18.75 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . D 3 9.104 61.742 48.04 1 18.75 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . D 3 8.369 61.671 49.288 1 18.75 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . D 3 10.307 62.687 47.982 1 18.75 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . D 3 8.016 62.049 46.832 1 18.75 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . D 3 8.711 62.149 45.518 1 18.75 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . D 3 7.525 62.799 44.656 1 18.75 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . D 3 6.277 62.072 44.684 1 18.75 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . D 3 7.178 64.178 44.975 1 18.75 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . D 3 7.067 64.988 43.828 1 18.75 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . D 3 5.896 64.156 45.832 1 18.75 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . D 3 5.219 65.286 45.814 1 18.75 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . D 3 5.167 62.905 44.988 1 18.75 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . D 3 4.207 62.174 45.884 1 18.75 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . D 3 4.581 61.467 47.025 1 18.75 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . D 3 3.344 61.032 47.418 1 18.75 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . D 3 2.279 61.423 46.601 1 18.75 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . D 3 1.025 61.165 46.717 1 18.75 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . D 3 0.236 60.54 47.481 1 18.75 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . D 3 0.225 61.805 45.575 1 18.75 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . D 3 0.926 62.489 44.7 1 18.75 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . D 3 0.119 63.108 43.588 1 18.75 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . D 3 2.245 62.763 44.578 1 18.75 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . D 3 2.865 62.151 45.634 1 18.75 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #