data_1SW7 # _model_server_result.job_id vtojWG2ZH30E9-_KXuMSNw _model_server_result.datetime_utc '2024-11-24 00:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1350}' # _entry.id 1SW7 # _exptl.entry_id 1SW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SW7 _cell.length_a 87.218 _cell.length_b 87.218 _cell.length_c 162.942 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 1SW7 _atom_sites.fract_transf_matrix[1][1] 0.011466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGA A 1 1350 350 PGA PGA . D 2 PGA B 1 2350 350 PGA PGA . E 3 HOH A 1 1351 4 HOH HOH . E 3 HOH A 2 1352 14 HOH HOH . E 3 HOH A 3 1353 18 HOH HOH . E 3 HOH A 4 1354 20 HOH HOH . E 3 HOH A 5 1355 21 HOH HOH . E 3 HOH A 6 1356 31 HOH HOH . E 3 HOH A 7 1357 34 HOH HOH . E 3 HOH A 8 1358 35 HOH HOH . E 3 HOH A 9 1359 37 HOH HOH . E 3 HOH A 10 1360 42 HOH HOH . E 3 HOH A 11 1361 43 HOH HOH . E 3 HOH A 12 1362 46 HOH HOH . E 3 HOH A 13 1363 51 HOH HOH . E 3 HOH A 14 1364 57 HOH HOH . E 3 HOH A 15 1365 58 HOH HOH . E 3 HOH A 16 1366 59 HOH HOH . E 3 HOH A 17 1367 62 HOH HOH . E 3 HOH A 18 1368 63 HOH HOH . E 3 HOH A 19 1369 64 HOH HOH . E 3 HOH A 20 1370 65 HOH HOH . E 3 HOH A 21 1371 67 HOH HOH . E 3 HOH A 22 1372 69 HOH HOH . E 3 HOH A 23 1373 70 HOH HOH . E 3 HOH A 24 1374 71 HOH HOH . E 3 HOH A 25 1375 75 HOH HOH . E 3 HOH A 26 1376 76 HOH HOH . E 3 HOH A 27 1377 80 HOH HOH . E 3 HOH A 28 1378 83 HOH HOH . E 3 HOH A 29 1379 84 HOH HOH . E 3 HOH A 30 1380 88 HOH HOH . E 3 HOH A 31 1381 89 HOH HOH . E 3 HOH A 32 1382 90 HOH HOH . E 3 HOH A 33 1383 92 HOH HOH . E 3 HOH A 34 1384 94 HOH HOH . E 3 HOH A 35 1385 95 HOH HOH . E 3 HOH A 36 1386 97 HOH HOH . E 3 HOH A 37 1387 98 HOH HOH . E 3 HOH A 38 1388 99 HOH HOH . E 3 HOH A 39 1389 100 HOH HOH . E 3 HOH A 40 1390 101 HOH HOH . E 3 HOH A 41 1391 102 HOH HOH . E 3 HOH A 42 1392 104 HOH HOH . E 3 HOH A 43 1393 106 HOH HOH . E 3 HOH A 44 1394 109 HOH HOH . E 3 HOH A 45 1395 112 HOH HOH . E 3 HOH A 46 1396 115 HOH HOH . E 3 HOH A 47 1397 119 HOH HOH . E 3 HOH A 48 1398 124 HOH HOH . E 3 HOH A 49 1399 130 HOH HOH . E 3 HOH A 50 1400 133 HOH HOH . E 3 HOH A 51 1401 139 HOH HOH . E 3 HOH A 52 1402 141 HOH HOH . E 3 HOH A 53 1403 142 HOH HOH . E 3 HOH A 54 1404 143 HOH HOH . E 3 HOH A 55 1405 144 HOH HOH . E 3 HOH A 56 1406 145 HOH HOH . E 3 HOH A 57 1407 146 HOH HOH . E 3 HOH A 58 1408 147 HOH HOH . E 3 HOH A 59 1409 150 HOH HOH . E 3 HOH A 60 1410 153 HOH HOH . E 3 HOH A 61 1411 157 HOH HOH . E 3 HOH A 62 1412 158 HOH HOH . E 3 HOH A 63 1413 159 HOH HOH . E 3 HOH A 64 1414 177 HOH HOH . E 3 HOH A 65 1415 187 HOH HOH . E 3 HOH A 66 1416 188 HOH HOH . E 3 HOH A 67 1417 191 HOH HOH . E 3 HOH A 68 1418 193 HOH HOH . E 3 HOH A 69 1419 198 HOH HOH . E 3 HOH A 70 1420 200 HOH HOH . E 3 HOH A 71 1421 201 HOH HOH . E 3 HOH A 72 1422 204 HOH HOH . E 3 HOH A 73 1423 210 HOH HOH . E 3 HOH A 74 1424 212 HOH HOH . E 3 HOH A 75 1425 214 HOH HOH . E 3 HOH A 76 1426 215 HOH HOH . E 3 HOH A 77 1427 217 HOH HOH . E 3 HOH A 78 1428 218 HOH HOH . E 3 HOH A 79 1429 219 HOH HOH . E 3 HOH A 80 1430 220 HOH HOH . E 3 HOH A 81 1431 221 HOH HOH . E 3 HOH A 82 1432 224 HOH HOH . E 3 HOH A 83 1433 225 HOH HOH . E 3 HOH A 84 1434 226 HOH HOH . E 3 HOH A 85 1435 229 HOH HOH . E 3 HOH A 86 1436 231 HOH HOH . E 3 HOH A 87 1437 232 HOH HOH . E 3 HOH A 88 1438 233 HOH HOH . E 3 HOH A 89 1439 234 HOH HOH . E 3 HOH A 90 1440 236 HOH HOH . E 3 HOH A 91 1441 237 HOH HOH . E 3 HOH A 92 1442 245 HOH HOH . E 3 HOH A 93 1443 247 HOH HOH . E 3 HOH A 94 1444 248 HOH HOH . E 3 HOH A 95 1445 252 HOH HOH . E 3 HOH A 96 1446 254 HOH HOH . E 3 HOH A 97 1447 258 HOH HOH . E 3 HOH A 98 1448 259 HOH HOH . E 3 HOH A 99 1449 260 HOH HOH . E 3 HOH A 100 1450 264 HOH HOH . E 3 HOH A 101 1451 270 HOH HOH . E 3 HOH A 102 1452 275 HOH HOH . E 3 HOH A 103 1453 276 HOH HOH . E 3 HOH A 104 1454 277 HOH HOH . E 3 HOH A 105 1455 283 HOH HOH . E 3 HOH A 106 1456 284 HOH HOH . E 3 HOH A 107 1457 286 HOH HOH . E 3 HOH A 108 1458 291 HOH HOH . E 3 HOH A 109 1459 292 HOH HOH . E 3 HOH A 110 1460 296 HOH HOH . E 3 HOH A 111 1461 297 HOH HOH . E 3 HOH A 112 1462 299 HOH HOH . E 3 HOH A 113 1463 301 HOH HOH . E 3 HOH A 114 1464 305 HOH HOH . E 3 HOH A 115 1465 306 HOH HOH . E 3 HOH A 116 1466 309 HOH HOH . E 3 HOH A 117 1467 311 HOH HOH . E 3 HOH A 118 1468 312 HOH HOH . E 3 HOH A 119 1469 314 HOH HOH . E 3 HOH A 120 1470 315 HOH HOH . E 3 HOH A 121 1471 316 HOH HOH . E 3 HOH A 122 1472 318 HOH HOH . E 3 HOH A 123 1473 319 HOH HOH . E 3 HOH A 124 1474 323 HOH HOH . E 3 HOH A 125 1475 324 HOH HOH . E 3 HOH A 126 1476 326 HOH HOH . E 3 HOH A 127 1477 329 HOH HOH . E 3 HOH A 128 1478 331 HOH HOH . E 3 HOH A 129 1479 332 HOH HOH . E 3 HOH A 130 1480 333 HOH HOH . E 3 HOH A 131 1481 338 HOH HOH . E 3 HOH A 132 1482 339 HOH HOH . E 3 HOH A 133 1483 340 HOH HOH . E 3 HOH A 134 1484 343 HOH HOH . E 3 HOH A 135 1485 344 HOH HOH . E 3 HOH A 136 1486 346 HOH HOH . E 3 HOH A 137 1487 347 HOH HOH . E 3 HOH A 138 1488 348 HOH HOH . E 3 HOH A 139 1489 351 HOH HOH . E 3 HOH A 140 1490 352 HOH HOH . E 3 HOH A 141 1491 353 HOH HOH . E 3 HOH A 142 1492 356 HOH HOH . E 3 HOH A 143 1493 362 HOH HOH . E 3 HOH A 144 1494 363 HOH HOH . E 3 HOH A 145 1495 365 HOH HOH . E 3 HOH A 146 1496 366 HOH HOH . E 3 HOH A 147 1497 367 HOH HOH . E 3 HOH A 148 1498 369 HOH HOH . F 3 HOH B 1 2351 7 HOH HOH . F 3 HOH B 2 2352 11 HOH HOH . F 3 HOH B 3 2353 13 HOH HOH . F 3 HOH B 4 2354 22 HOH HOH . F 3 HOH B 5 2355 24 HOH HOH . F 3 HOH B 6 2356 25 HOH HOH . F 3 HOH B 7 2357 26 HOH HOH . F 3 HOH B 8 2358 28 HOH HOH . F 3 HOH B 9 2359 29 HOH HOH . F 3 HOH B 10 2360 30 HOH HOH . F 3 HOH B 11 2361 39 HOH HOH . F 3 HOH B 12 2362 40 HOH HOH . F 3 HOH B 13 2363 48 HOH HOH . F 3 HOH B 14 2364 49 HOH HOH . F 3 HOH B 15 2365 53 HOH HOH . F 3 HOH B 16 2366 55 HOH HOH . F 3 HOH B 17 2367 56 HOH HOH . F 3 HOH B 18 2368 61 HOH HOH . F 3 HOH B 19 2369 66 HOH HOH . F 3 HOH B 20 2370 68 HOH HOH . F 3 HOH B 21 2371 72 HOH HOH . F 3 HOH B 22 2372 74 HOH HOH . F 3 HOH B 23 2373 77 HOH HOH . F 3 HOH B 24 2374 79 HOH HOH . F 3 HOH B 25 2375 81 HOH HOH . F 3 HOH B 26 2376 82 HOH HOH . F 3 HOH B 27 2377 85 HOH HOH . F 3 HOH B 28 2378 86 HOH HOH . F 3 HOH B 29 2379 87 HOH HOH . F 3 HOH B 30 2380 91 HOH HOH . F 3 HOH B 31 2381 93 HOH HOH . F 3 HOH B 32 2382 96 HOH HOH . F 3 HOH B 33 2383 103 HOH HOH . F 3 HOH B 34 2384 105 HOH HOH . F 3 HOH B 35 2385 107 HOH HOH . F 3 HOH B 36 2386 108 HOH HOH . F 3 HOH B 37 2387 110 HOH HOH . F 3 HOH B 38 2388 111 HOH HOH . F 3 HOH B 39 2389 114 HOH HOH . F 3 HOH B 40 2390 117 HOH HOH . F 3 HOH B 41 2391 120 HOH HOH . F 3 HOH B 42 2392 122 HOH HOH . F 3 HOH B 43 2393 123 HOH HOH . F 3 HOH B 44 2394 126 HOH HOH . F 3 HOH B 45 2395 128 HOH HOH . F 3 HOH B 46 2396 129 HOH HOH . F 3 HOH B 47 2397 131 HOH HOH . F 3 HOH B 48 2398 132 HOH HOH . F 3 HOH B 49 2399 134 HOH HOH . F 3 HOH B 50 2400 135 HOH HOH . F 3 HOH B 51 2401 136 HOH HOH . F 3 HOH B 52 2402 137 HOH HOH . F 3 HOH B 53 2403 138 HOH HOH . F 3 HOH B 54 2404 140 HOH HOH . F 3 HOH B 55 2405 149 HOH HOH . F 3 HOH B 56 2406 151 HOH HOH . F 3 HOH B 57 2407 152 HOH HOH . F 3 HOH B 58 2408 154 HOH HOH . F 3 HOH B 59 2409 156 HOH HOH . F 3 HOH B 60 2410 160 HOH HOH . F 3 HOH B 61 2411 189 HOH HOH . F 3 HOH B 62 2412 190 HOH HOH . F 3 HOH B 63 2413 196 HOH HOH . F 3 HOH B 64 2414 197 HOH HOH . F 3 HOH B 65 2415 202 HOH HOH . F 3 HOH B 66 2416 203 HOH HOH . F 3 HOH B 67 2417 205 HOH HOH . F 3 HOH B 68 2418 206 HOH HOH . F 3 HOH B 69 2419 207 HOH HOH . F 3 HOH B 70 2420 209 HOH HOH . F 3 HOH B 71 2421 211 HOH HOH . F 3 HOH B 72 2422 216 HOH HOH . F 3 HOH B 73 2423 223 HOH HOH . F 3 HOH B 74 2424 228 HOH HOH . F 3 HOH B 75 2425 230 HOH HOH . F 3 HOH B 76 2426 235 HOH HOH . F 3 HOH B 77 2427 238 HOH HOH . F 3 HOH B 78 2428 241 HOH HOH . F 3 HOH B 79 2429 242 HOH HOH . F 3 HOH B 80 2430 243 HOH HOH . F 3 HOH B 81 2431 244 HOH HOH . F 3 HOH B 82 2432 246 HOH HOH . F 3 HOH B 83 2433 249 HOH HOH . F 3 HOH B 84 2434 250 HOH HOH . F 3 HOH B 85 2435 251 HOH HOH . F 3 HOH B 86 2436 253 HOH HOH . F 3 HOH B 87 2437 255 HOH HOH . F 3 HOH B 88 2438 256 HOH HOH . F 3 HOH B 89 2439 257 HOH HOH . F 3 HOH B 90 2440 261 HOH HOH . F 3 HOH B 91 2441 265 HOH HOH . F 3 HOH B 92 2442 273 HOH HOH . F 3 HOH B 93 2443 274 HOH HOH . F 3 HOH B 94 2444 278 HOH HOH . F 3 HOH B 95 2445 279 HOH HOH . F 3 HOH B 96 2446 281 HOH HOH . F 3 HOH B 97 2447 282 HOH HOH . F 3 HOH B 98 2448 285 HOH HOH . F 3 HOH B 99 2449 287 HOH HOH . F 3 HOH B 100 2450 289 HOH HOH . F 3 HOH B 101 2451 290 HOH HOH . F 3 HOH B 102 2452 293 HOH HOH . F 3 HOH B 103 2453 294 HOH HOH . F 3 HOH B 104 2454 295 HOH HOH . F 3 HOH B 105 2455 298 HOH HOH . F 3 HOH B 106 2456 302 HOH HOH . F 3 HOH B 107 2457 304 HOH HOH . F 3 HOH B 108 2458 307 HOH HOH . F 3 HOH B 109 2459 308 HOH HOH . F 3 HOH B 110 2460 310 HOH HOH . F 3 HOH B 111 2461 313 HOH HOH . F 3 HOH B 112 2462 320 HOH HOH . F 3 HOH B 113 2463 321 HOH HOH . F 3 HOH B 114 2464 322 HOH HOH . F 3 HOH B 115 2465 325 HOH HOH . F 3 HOH B 116 2466 327 HOH HOH . F 3 HOH B 117 2467 334 HOH HOH . F 3 HOH B 118 2468 335 HOH HOH . F 3 HOH B 119 2469 336 HOH HOH . F 3 HOH B 120 2470 337 HOH HOH . F 3 HOH B 121 2471 341 HOH HOH . F 3 HOH B 122 2472 342 HOH HOH . F 3 HOH B 123 2473 345 HOH HOH . F 3 HOH B 124 2474 349 HOH HOH . F 3 HOH B 125 2475 350 HOH HOH . F 3 HOH B 126 2476 354 HOH HOH . F 3 HOH B 127 2477 355 HOH HOH . F 3 HOH B 128 2478 357 HOH HOH . F 3 HOH B 129 2479 358 HOH HOH . F 3 HOH B 130 2480 359 HOH HOH . F 3 HOH B 131 2481 360 HOH HOH . F 3 HOH B 132 2482 361 HOH HOH . F 3 HOH B 133 2483 364 HOH HOH . F 3 HOH B 134 2484 368 HOH HOH . F 3 HOH B 135 2485 370 HOH HOH . F 3 HOH B 136 2486 371 HOH HOH . F 3 HOH B 137 2487 372 HOH HOH . F 3 HOH B 138 2488 373 HOH HOH . F 3 HOH B 139 2489 374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . C 2 6.054 28.45 40.876 1 19.05 ? P PGA 1350 A 1 HETATM 2 O O1P PGA . . . C 2 5.575 28.492 39.349 1 17.78 ? O1P PGA 1350 A 1 HETATM 3 O O2P PGA . . . C 2 7.138 27.436 40.987 1 17.81 ? O2P PGA 1350 A 1 HETATM 4 O O3P PGA . . . C 2 4.832 28.082 41.719 1 16.06 ? O3P PGA 1350 A 1 HETATM 5 O O4P PGA . . . C 2 6.595 29.823 41.298 1 17.95 ? O4P PGA 1350 A 1 HETATM 6 C C2 PGA . . . C 2 5.349 27.297 38.638 1 19.25 ? C2 PGA 1350 A 1 HETATM 7 C C1 PGA . . . C 2 4.941 27.66 37.234 1 20.7 ? C1 PGA 1350 A 1 HETATM 8 O O1 PGA . . . C 2 4.32 28.879 36.986 1 23.56 ? O1 PGA 1350 A 1 HETATM 9 O O2 PGA . . . C 2 5.142 26.875 36.216 1 22.32 ? O2 PGA 1350 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 9 #