data_1SWD # _model_server_result.job_id V8_uq7EJzEANVfoVGdfO4A _model_server_result.datetime_utc '2024-11-23 05:48:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1swd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1SWD # _exptl.entry_id 1SWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.13 _cell.angle_gamma 90 _cell.entry_id 1SWD _cell.length_a 57.794 _cell.length_b 85.191 _cell.length_c 46.599 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 1SWD _atom_sites.fract_transf_matrix[1][1] 0.017303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTN A 1 300 300 BTN BTN . F 2 BTN D 1 600 600 BTN BTN . G 3 HOH A 1 301 201 HOH HOH . G 3 HOH A 2 302 203 HOH HOH . G 3 HOH A 3 303 204 HOH HOH . G 3 HOH A 4 304 210 HOH HOH . G 3 HOH A 5 305 212 HOH HOH . G 3 HOH A 6 306 214 HOH HOH . G 3 HOH A 7 307 218 HOH HOH . G 3 HOH A 8 308 220 HOH HOH . G 3 HOH A 9 309 227 HOH HOH . G 3 HOH A 10 310 229 HOH HOH . G 3 HOH A 11 311 230 HOH HOH . G 3 HOH A 12 312 235 HOH HOH . G 3 HOH A 13 313 236 HOH HOH . G 3 HOH A 14 314 247 HOH HOH . G 3 HOH A 15 315 251 HOH HOH . G 3 HOH A 16 316 253 HOH HOH . G 3 HOH A 17 317 264 HOH HOH . G 3 HOH A 18 318 267 HOH HOH . G 3 HOH A 19 319 272 HOH HOH . G 3 HOH A 20 320 278 HOH HOH . G 3 HOH A 21 321 282 HOH HOH . G 3 HOH A 22 322 283 HOH HOH . G 3 HOH A 23 323 285 HOH HOH . G 3 HOH A 24 324 290 HOH HOH . G 3 HOH A 25 325 294 HOH HOH . G 3 HOH A 26 326 300 HOH HOH . G 3 HOH A 27 327 305 HOH HOH . G 3 HOH A 28 328 307 HOH HOH . G 3 HOH A 29 329 308 HOH HOH . G 3 HOH A 30 330 313 HOH HOH . G 3 HOH A 31 331 322 HOH HOH . G 3 HOH A 32 332 324 HOH HOH . G 3 HOH A 33 333 328 HOH HOH . G 3 HOH A 34 334 329 HOH HOH . G 3 HOH A 35 335 330 HOH HOH . G 3 HOH A 36 336 331 HOH HOH . G 3 HOH A 37 337 333 HOH HOH . G 3 HOH A 38 338 334 HOH HOH . G 3 HOH A 39 339 337 HOH HOH . G 3 HOH A 40 340 340 HOH HOH . G 3 HOH A 41 341 345 HOH HOH . G 3 HOH A 42 342 347 HOH HOH . G 3 HOH A 43 343 364 HOH HOH . G 3 HOH A 44 344 365 HOH HOH . G 3 HOH A 45 345 373 HOH HOH . G 3 HOH A 46 346 382 HOH HOH . G 3 HOH A 47 347 383 HOH HOH . G 3 HOH A 48 348 384 HOH HOH . G 3 HOH A 49 349 385 HOH HOH . G 3 HOH A 50 350 387 HOH HOH . G 3 HOH A 51 351 390 HOH HOH . G 3 HOH A 52 352 392 HOH HOH . G 3 HOH A 53 353 398 HOH HOH . G 3 HOH A 54 354 400 HOH HOH . G 3 HOH A 55 355 403 HOH HOH . G 3 HOH A 56 356 408 HOH HOH . G 3 HOH A 57 357 415 HOH HOH . G 3 HOH A 58 358 417 HOH HOH . G 3 HOH A 59 359 420 HOH HOH . G 3 HOH A 60 360 425 HOH HOH . G 3 HOH A 61 361 427 HOH HOH . G 3 HOH A 62 362 433 HOH HOH . H 3 HOH B 1 202 202 HOH HOH . H 3 HOH B 2 206 206 HOH HOH . H 3 HOH B 3 208 208 HOH HOH . H 3 HOH B 4 211 211 HOH HOH . H 3 HOH B 5 219 219 HOH HOH . H 3 HOH B 6 225 225 HOH HOH . H 3 HOH B 7 238 238 HOH HOH . H 3 HOH B 8 240 240 HOH HOH . H 3 HOH B 9 242 242 HOH HOH . H 3 HOH B 10 252 252 HOH HOH . H 3 HOH B 11 254 254 HOH HOH . H 3 HOH B 12 261 261 HOH HOH . H 3 HOH B 13 268 268 HOH HOH . H 3 HOH B 14 271 271 HOH HOH . H 3 HOH B 15 274 274 HOH HOH . H 3 HOH B 16 276 276 HOH HOH . H 3 HOH B 17 277 277 HOH HOH . H 3 HOH B 18 292 292 HOH HOH . H 3 HOH B 19 298 298 HOH HOH . H 3 HOH B 20 299 299 HOH HOH . H 3 HOH B 21 301 301 HOH HOH . H 3 HOH B 22 303 303 HOH HOH . H 3 HOH B 23 306 306 HOH HOH . H 3 HOH B 24 315 315 HOH HOH . H 3 HOH B 25 317 317 HOH HOH . H 3 HOH B 26 319 319 HOH HOH . H 3 HOH B 27 327 327 HOH HOH . H 3 HOH B 28 338 338 HOH HOH . H 3 HOH B 29 341 341 HOH HOH . H 3 HOH B 30 349 349 HOH HOH . H 3 HOH B 31 353 353 HOH HOH . H 3 HOH B 32 354 354 HOH HOH . H 3 HOH B 33 355 355 HOH HOH . H 3 HOH B 34 357 357 HOH HOH . H 3 HOH B 35 359 359 HOH HOH . H 3 HOH B 36 360 360 HOH HOH . H 3 HOH B 37 361 361 HOH HOH . H 3 HOH B 38 362 362 HOH HOH . H 3 HOH B 39 371 371 HOH HOH . H 3 HOH B 40 372 372 HOH HOH . H 3 HOH B 41 375 375 HOH HOH . H 3 HOH B 42 379 379 HOH HOH . H 3 HOH B 43 394 394 HOH HOH . H 3 HOH B 44 395 395 HOH HOH . H 3 HOH B 45 397 397 HOH HOH . H 3 HOH B 46 405 405 HOH HOH . H 3 HOH B 47 407 407 HOH HOH . H 3 HOH B 48 410 410 HOH HOH . H 3 HOH B 49 411 411 HOH HOH . H 3 HOH B 50 412 412 HOH HOH . H 3 HOH B 51 413 413 HOH HOH . H 3 HOH B 52 419 419 HOH HOH . H 3 HOH B 53 430 430 HOH HOH . H 3 HOH B 54 431 431 HOH HOH . I 3 HOH C 1 209 209 HOH HOH . I 3 HOH C 2 213 213 HOH HOH . I 3 HOH C 3 215 215 HOH HOH . I 3 HOH C 4 216 216 HOH HOH . I 3 HOH C 5 217 217 HOH HOH . I 3 HOH C 6 224 224 HOH HOH . I 3 HOH C 7 232 232 HOH HOH . I 3 HOH C 8 233 233 HOH HOH . I 3 HOH C 9 239 239 HOH HOH . I 3 HOH C 10 243 243 HOH HOH . I 3 HOH C 11 244 244 HOH HOH . I 3 HOH C 12 245 245 HOH HOH . I 3 HOH C 13 248 248 HOH HOH . I 3 HOH C 14 249 249 HOH HOH . I 3 HOH C 15 250 250 HOH HOH . I 3 HOH C 16 256 256 HOH HOH . I 3 HOH C 17 257 257 HOH HOH . I 3 HOH C 18 258 258 HOH HOH . I 3 HOH C 19 259 259 HOH HOH . I 3 HOH C 20 265 265 HOH HOH . I 3 HOH C 21 275 275 HOH HOH . I 3 HOH C 22 284 284 HOH HOH . I 3 HOH C 23 286 286 HOH HOH . I 3 HOH C 24 288 288 HOH HOH . I 3 HOH C 25 289 289 HOH HOH . I 3 HOH C 26 293 293 HOH HOH . I 3 HOH C 27 304 304 HOH HOH . I 3 HOH C 28 310 310 HOH HOH . I 3 HOH C 29 311 311 HOH HOH . I 3 HOH C 30 312 312 HOH HOH . I 3 HOH C 31 316 316 HOH HOH . I 3 HOH C 32 318 318 HOH HOH . I 3 HOH C 33 321 321 HOH HOH . I 3 HOH C 34 325 325 HOH HOH . I 3 HOH C 35 332 332 HOH HOH . I 3 HOH C 36 335 335 HOH HOH . I 3 HOH C 37 336 336 HOH HOH . I 3 HOH C 38 339 339 HOH HOH . I 3 HOH C 39 342 342 HOH HOH . I 3 HOH C 40 343 343 HOH HOH . I 3 HOH C 41 344 344 HOH HOH . I 3 HOH C 42 350 350 HOH HOH . I 3 HOH C 43 351 351 HOH HOH . I 3 HOH C 44 363 363 HOH HOH . I 3 HOH C 45 367 367 HOH HOH . I 3 HOH C 46 368 368 HOH HOH . I 3 HOH C 47 374 374 HOH HOH . I 3 HOH C 48 376 376 HOH HOH . I 3 HOH C 49 381 381 HOH HOH . I 3 HOH C 50 386 386 HOH HOH . I 3 HOH C 51 388 388 HOH HOH . I 3 HOH C 52 389 389 HOH HOH . I 3 HOH C 53 391 391 HOH HOH . I 3 HOH C 54 393 393 HOH HOH . I 3 HOH C 55 401 401 HOH HOH . I 3 HOH C 56 406 406 HOH HOH . I 3 HOH C 57 409 409 HOH HOH . I 3 HOH C 58 414 414 HOH HOH . I 3 HOH C 59 422 422 HOH HOH . I 3 HOH C 60 423 423 HOH HOH . I 3 HOH C 61 424 424 HOH HOH . I 3 HOH C 62 426 426 HOH HOH . I 3 HOH C 63 429 429 HOH HOH . I 3 HOH C 64 432 432 HOH HOH . J 3 HOH D 1 205 205 HOH HOH . J 3 HOH D 2 207 207 HOH HOH . J 3 HOH D 3 221 221 HOH HOH . J 3 HOH D 4 222 222 HOH HOH . J 3 HOH D 5 223 223 HOH HOH . J 3 HOH D 6 226 226 HOH HOH . J 3 HOH D 7 228 228 HOH HOH . J 3 HOH D 8 231 231 HOH HOH . J 3 HOH D 9 234 234 HOH HOH . J 3 HOH D 10 237 237 HOH HOH . J 3 HOH D 11 241 241 HOH HOH . J 3 HOH D 12 246 246 HOH HOH . J 3 HOH D 13 255 255 HOH HOH . J 3 HOH D 14 260 260 HOH HOH . J 3 HOH D 15 262 262 HOH HOH . J 3 HOH D 16 263 263 HOH HOH . J 3 HOH D 17 266 266 HOH HOH . J 3 HOH D 18 269 269 HOH HOH . J 3 HOH D 19 270 270 HOH HOH . J 3 HOH D 20 273 273 HOH HOH . J 3 HOH D 21 279 279 HOH HOH . J 3 HOH D 22 280 280 HOH HOH . J 3 HOH D 23 281 281 HOH HOH . J 3 HOH D 24 287 287 HOH HOH . J 3 HOH D 25 291 291 HOH HOH . J 3 HOH D 26 295 295 HOH HOH . J 3 HOH D 27 296 296 HOH HOH . J 3 HOH D 28 297 297 HOH HOH . J 3 HOH D 29 302 302 HOH HOH . J 3 HOH D 30 309 309 HOH HOH . J 3 HOH D 31 314 314 HOH HOH . J 3 HOH D 32 320 320 HOH HOH . J 3 HOH D 33 323 323 HOH HOH . J 3 HOH D 34 326 326 HOH HOH . J 3 HOH D 35 346 346 HOH HOH . J 3 HOH D 36 348 348 HOH HOH . J 3 HOH D 37 352 352 HOH HOH . J 3 HOH D 38 356 356 HOH HOH . J 3 HOH D 39 358 358 HOH HOH . J 3 HOH D 40 366 366 HOH HOH . J 3 HOH D 41 369 369 HOH HOH . J 3 HOH D 42 370 370 HOH HOH . J 3 HOH D 43 377 377 HOH HOH . J 3 HOH D 44 378 378 HOH HOH . J 3 HOH D 45 380 380 HOH HOH . J 3 HOH D 46 396 396 HOH HOH . J 3 HOH D 47 399 399 HOH HOH . J 3 HOH D 48 402 402 HOH HOH . J 3 HOH D 49 404 404 HOH HOH . J 3 HOH D 50 416 416 HOH HOH . J 3 HOH D 51 418 418 HOH HOH . J 3 HOH D 52 421 421 HOH HOH . J 3 HOH D 53 428 428 HOH HOH . J 3 HOH D 54 434 434 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . F 2 6.986 -13.345 22.981 0.7 26.87 ? C11 BTN 600 D 1 HETATM 2 O O11 BTN . . . F 2 7.852 -13.494 23.874 0.7 29.93 ? O11 BTN 600 D 1 HETATM 3 O O12 BTN . . . F 2 6.155 -12.403 23.004 0.7 25.83 ? O12 BTN 600 D 1 HETATM 4 C C10 BTN . . . F 2 7.048 -14.308 21.837 0.7 21.82 ? C10 BTN 600 D 1 HETATM 5 C C9 BTN . . . F 2 7.723 -13.598 20.642 0.7 21.44 ? C9 BTN 600 D 1 HETATM 6 C C8 BTN . . . F 2 8.274 -14.609 19.664 0.7 20.9 ? C8 BTN 600 D 1 HETATM 7 C C7 BTN . . . F 2 9.753 -14.474 19.327 0.7 22.09 ? C7 BTN 600 D 1 HETATM 8 C C2 BTN . . . F 2 10.221 -13.558 18.233 0.7 23.99 ? C2 BTN 600 D 1 HETATM 9 S S1 BTN . . . F 2 9.066 -13.203 16.855 0.7 19.41 ? S1 BTN 600 D 1 HETATM 10 C C6 BTN . . . F 2 10.428 -12.365 15.975 0.7 25.83 ? C6 BTN 600 D 1 HETATM 11 C C5 BTN . . . F 2 11.668 -13.208 16.183 0.7 18.39 ? C5 BTN 600 D 1 HETATM 12 N N1 BTN . . . F 2 11.814 -14.315 15.249 0.7 25.35 ? N1 BTN 600 D 1 HETATM 13 C C3 BTN . . . F 2 11.771 -15.507 15.851 0.7 21.54 ? C3 BTN 600 D 1 HETATM 14 O O3 BTN . . . F 2 11.861 -16.644 15.317 0.7 19.42 ? O3 BTN 600 D 1 HETATM 15 N N2 BTN . . . F 2 11.606 -15.324 17.18 0.7 15.87 ? N2 BTN 600 D 1 HETATM 16 C C4 BTN . . . F 2 11.535 -13.923 17.545 0.7 15.87 ? C4 BTN 600 D 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #