data_1SWK # _model_server_result.job_id '_rkMhEONRyo0WyInEs2NuA' _model_server_result.datetime_utc '2024-11-23 23:03:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1swk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5300}' # _entry.id 1SWK # _exptl.entry_id 1SWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EPI-BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93 _cell.angle_gamma 90 _cell.entry_id 1SWK _cell.length_a 59.3 _cell.length_b 64.6 _cell.length_c 76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTQ _chem_comp.mon_nstd_flag . _chem_comp.name EPI-BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-[(3AS,4R,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTQ doub 103 n n C11 O12 BTQ sing 104 n n C11 C10 BTQ sing 105 n n O12 HO2 BTQ sing 106 n n C10 C9 BTQ sing 107 n n C10 H101 BTQ sing 108 n n C10 H102 BTQ sing 109 n n C9 C8 BTQ sing 110 n n C9 H91 BTQ sing 111 n n C9 H92 BTQ sing 112 n n C8 C7 BTQ sing 113 n n C8 H81 BTQ sing 114 n n C8 H82 BTQ sing 115 n n C7 C2 BTQ sing 116 n n C7 H71 BTQ sing 117 n n C7 H72 BTQ sing 118 n n C2 S1 BTQ sing 119 n n C2 C4 BTQ sing 120 n n C2 H2 BTQ sing 121 n n S1 C6 BTQ sing 122 n n C6 C5 BTQ sing 123 n n C6 H61 BTQ sing 124 n n C6 H62 BTQ sing 125 n n C5 N1 BTQ sing 126 n n C5 C4 BTQ sing 127 n n C5 H5 BTQ sing 128 n n N1 C3 BTQ sing 129 n n N1 HN1 BTQ sing 130 n n C3 O3 BTQ doub 131 n n C3 N2 BTQ sing 132 n n N2 C4 BTQ sing 133 n n N2 HN2 BTQ sing 134 n n C4 H4 BTQ sing 135 n n # _atom_sites.entry_id 1SWK _atom_sites.fract_transf_matrix[1][1] 0.016863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000884 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTN A 1 5100 5100 BTN BTN . F 2 BTN B 1 5200 5200 BTN BTN . G 3 BTQ C 1 5300 5300 BTQ BTN . H 2 BTN D 1 5400 5400 BTN BTN . I 4 HOH A 1 6010 6010 HOH HOH . I 4 HOH A 2 6011 6011 HOH HOH . I 4 HOH A 3 6016 6016 HOH HOH . I 4 HOH A 4 6022 6022 HOH HOH . I 4 HOH A 5 6027 6027 HOH HOH . I 4 HOH A 6 6031 6031 HOH HOH . I 4 HOH A 7 6039 6039 HOH HOH . I 4 HOH A 8 6046 6046 HOH HOH . I 4 HOH A 9 6054 6054 HOH HOH . I 4 HOH A 10 6055 6055 HOH HOH . I 4 HOH A 11 6056 6056 HOH HOH . I 4 HOH A 12 6061 6061 HOH HOH . I 4 HOH A 13 6070 6070 HOH HOH . I 4 HOH A 14 6076 6076 HOH HOH . I 4 HOH A 15 6079 6079 HOH HOH . I 4 HOH A 16 6084 6084 HOH HOH . I 4 HOH A 17 6089 6089 HOH HOH . I 4 HOH A 18 6092 6092 HOH HOH . I 4 HOH A 19 6097 6097 HOH HOH . I 4 HOH A 20 6103 6103 HOH HOH . I 4 HOH A 21 6109 6109 HOH HOH . I 4 HOH A 22 6115 6115 HOH HOH . I 4 HOH A 23 6119 6119 HOH HOH . I 4 HOH A 24 6121 6121 HOH HOH . I 4 HOH A 25 6127 6127 HOH HOH . I 4 HOH A 26 6129 6129 HOH HOH . I 4 HOH A 27 6131 6131 HOH HOH . I 4 HOH A 28 6137 6137 HOH HOH . I 4 HOH A 29 6139 6139 HOH HOH . I 4 HOH A 30 6143 6143 HOH HOH . I 4 HOH A 31 6144 6144 HOH HOH . I 4 HOH A 32 6147 6147 HOH HOH . I 4 HOH A 33 6150 6150 HOH HOH . I 4 HOH A 34 6151 6151 HOH HOH . I 4 HOH A 35 6153 6153 HOH HOH . I 4 HOH A 36 6155 6155 HOH HOH . I 4 HOH A 37 6157 6157 HOH HOH . I 4 HOH A 38 6158 6158 HOH HOH . I 4 HOH A 39 6166 6166 HOH HOH . I 4 HOH A 40 6167 6167 HOH HOH . I 4 HOH A 41 6171 6171 HOH HOH . I 4 HOH A 42 6174 6174 HOH HOH . I 4 HOH A 43 6177 6177 HOH HOH . I 4 HOH A 44 6183 6183 HOH HOH . I 4 HOH A 45 6190 6190 HOH HOH . I 4 HOH A 46 6195 6195 HOH HOH . I 4 HOH A 47 6196 6196 HOH HOH . I 4 HOH A 48 6197 6197 HOH HOH . I 4 HOH A 49 6200 6200 HOH HOH . I 4 HOH A 50 6201 6201 HOH HOH . I 4 HOH A 51 6202 6202 HOH HOH . J 4 HOH B 1 6024 6024 HOH HOH . J 4 HOH B 2 6025 6025 HOH HOH . J 4 HOH B 3 6036 6036 HOH HOH . J 4 HOH B 4 6042 6042 HOH HOH . J 4 HOH B 5 6047 6047 HOH HOH . J 4 HOH B 6 6050 6050 HOH HOH . J 4 HOH B 7 6052 6052 HOH HOH . J 4 HOH B 8 6053 6053 HOH HOH . J 4 HOH B 9 6057 6057 HOH HOH . J 4 HOH B 10 6059 6059 HOH HOH . J 4 HOH B 11 6066 6066 HOH HOH . J 4 HOH B 12 6073 6073 HOH HOH . J 4 HOH B 13 6075 6075 HOH HOH . J 4 HOH B 14 6081 6081 HOH HOH . J 4 HOH B 15 6095 6095 HOH HOH . J 4 HOH B 16 6102 6102 HOH HOH . J 4 HOH B 17 6120 6120 HOH HOH . J 4 HOH B 18 6122 6122 HOH HOH . J 4 HOH B 19 6123 6123 HOH HOH . J 4 HOH B 20 6124 6124 HOH HOH . J 4 HOH B 21 6128 6128 HOH HOH . J 4 HOH B 22 6134 6134 HOH HOH . J 4 HOH B 23 6135 6135 HOH HOH . J 4 HOH B 24 6136 6136 HOH HOH . J 4 HOH B 25 6149 6149 HOH HOH . J 4 HOH B 26 6156 6156 HOH HOH . J 4 HOH B 27 6160 6160 HOH HOH . J 4 HOH B 28 6164 6164 HOH HOH . J 4 HOH B 29 6182 6182 HOH HOH . J 4 HOH B 30 6186 6186 HOH HOH . J 4 HOH B 31 6188 6188 HOH HOH . J 4 HOH B 32 6204 6204 HOH HOH . J 4 HOH B 33 6205 6205 HOH HOH . J 4 HOH B 34 6207 6207 HOH HOH . J 4 HOH B 35 6209 6209 HOH HOH . K 4 HOH C 1 6002 6002 HOH HOH . K 4 HOH C 2 6003 6003 HOH HOH . K 4 HOH C 3 6004 6004 HOH HOH . K 4 HOH C 4 6005 6005 HOH HOH . K 4 HOH C 5 6006 6006 HOH HOH . K 4 HOH C 6 6013 6013 HOH HOH . K 4 HOH C 7 6015 6015 HOH HOH . K 4 HOH C 8 6017 6017 HOH HOH . K 4 HOH C 9 6018 6018 HOH HOH . K 4 HOH C 10 6020 6020 HOH HOH . K 4 HOH C 11 6021 6021 HOH HOH . K 4 HOH C 12 6023 6023 HOH HOH . K 4 HOH C 13 6026 6026 HOH HOH . K 4 HOH C 14 6028 6028 HOH HOH . K 4 HOH C 15 6029 6029 HOH HOH . K 4 HOH C 16 6030 6030 HOH HOH . K 4 HOH C 17 6033 6033 HOH HOH . K 4 HOH C 18 6035 6035 HOH HOH . K 4 HOH C 19 6038 6038 HOH HOH . K 4 HOH C 20 6043 6043 HOH HOH . K 4 HOH C 21 6048 6048 HOH HOH . K 4 HOH C 22 6049 6049 HOH HOH . K 4 HOH C 23 6051 6051 HOH HOH . K 4 HOH C 24 6058 6058 HOH HOH . K 4 HOH C 25 6063 6063 HOH HOH . K 4 HOH C 26 6068 6068 HOH HOH . K 4 HOH C 27 6071 6071 HOH HOH . K 4 HOH C 28 6072 6072 HOH HOH . K 4 HOH C 29 6080 6080 HOH HOH . K 4 HOH C 30 6085 6085 HOH HOH . K 4 HOH C 31 6088 6088 HOH HOH . K 4 HOH C 32 6094 6094 HOH HOH . K 4 HOH C 33 6098 6098 HOH HOH . K 4 HOH C 34 6099 6099 HOH HOH . K 4 HOH C 35 6106 6106 HOH HOH . K 4 HOH C 36 6110 6110 HOH HOH . K 4 HOH C 37 6113 6113 HOH HOH . K 4 HOH C 38 6116 6116 HOH HOH . K 4 HOH C 39 6118 6118 HOH HOH . K 4 HOH C 40 6125 6125 HOH HOH . K 4 HOH C 41 6132 6132 HOH HOH . K 4 HOH C 42 6133 6133 HOH HOH . K 4 HOH C 43 6141 6141 HOH HOH . K 4 HOH C 44 6142 6142 HOH HOH . K 4 HOH C 45 6146 6146 HOH HOH . K 4 HOH C 46 6152 6152 HOH HOH . K 4 HOH C 47 6154 6154 HOH HOH . K 4 HOH C 48 6161 6161 HOH HOH . K 4 HOH C 49 6162 6162 HOH HOH . K 4 HOH C 50 6163 6163 HOH HOH . K 4 HOH C 51 6165 6165 HOH HOH . K 4 HOH C 52 6168 6168 HOH HOH . K 4 HOH C 53 6172 6172 HOH HOH . K 4 HOH C 54 6173 6173 HOH HOH . K 4 HOH C 55 6176 6176 HOH HOH . K 4 HOH C 56 6178 6178 HOH HOH . K 4 HOH C 57 6180 6180 HOH HOH . K 4 HOH C 58 6181 6181 HOH HOH . K 4 HOH C 59 6185 6185 HOH HOH . K 4 HOH C 60 6187 6187 HOH HOH . K 4 HOH C 61 6189 6189 HOH HOH . K 4 HOH C 62 6199 6199 HOH HOH . K 4 HOH C 63 6203 6203 HOH HOH . K 4 HOH C 64 6206 6206 HOH HOH . K 4 HOH C 65 6208 6208 HOH HOH . K 4 HOH C 66 6210 6210 HOH HOH . K 4 HOH C 67 6211 6211 HOH HOH . L 4 HOH D 1 6001 6001 HOH HOH . L 4 HOH D 2 6007 6007 HOH HOH . L 4 HOH D 3 6008 6008 HOH HOH . L 4 HOH D 4 6009 6009 HOH HOH . L 4 HOH D 5 6012 6012 HOH HOH . L 4 HOH D 6 6014 6014 HOH HOH . L 4 HOH D 7 6019 6019 HOH HOH . L 4 HOH D 8 6032 6032 HOH HOH . L 4 HOH D 9 6034 6034 HOH HOH . L 4 HOH D 10 6037 6037 HOH HOH . L 4 HOH D 11 6040 6040 HOH HOH . L 4 HOH D 12 6041 6041 HOH HOH . L 4 HOH D 13 6044 6044 HOH HOH . L 4 HOH D 14 6045 6045 HOH HOH . L 4 HOH D 15 6060 6060 HOH HOH . L 4 HOH D 16 6062 6062 HOH HOH . L 4 HOH D 17 6064 6064 HOH HOH . L 4 HOH D 18 6065 6065 HOH HOH . L 4 HOH D 19 6067 6067 HOH HOH . L 4 HOH D 20 6069 6069 HOH HOH . L 4 HOH D 21 6074 6074 HOH HOH . L 4 HOH D 22 6077 6077 HOH HOH . L 4 HOH D 23 6078 6078 HOH HOH . L 4 HOH D 24 6082 6082 HOH HOH . L 4 HOH D 25 6083 6083 HOH HOH . L 4 HOH D 26 6086 6086 HOH HOH . L 4 HOH D 27 6087 6087 HOH HOH . L 4 HOH D 28 6090 6090 HOH HOH . L 4 HOH D 29 6091 6091 HOH HOH . L 4 HOH D 30 6093 6093 HOH HOH . L 4 HOH D 31 6096 6096 HOH HOH . L 4 HOH D 32 6100 6100 HOH HOH . L 4 HOH D 33 6101 6101 HOH HOH . L 4 HOH D 34 6104 6104 HOH HOH . L 4 HOH D 35 6105 6105 HOH HOH . L 4 HOH D 36 6107 6107 HOH HOH . L 4 HOH D 37 6108 6108 HOH HOH . L 4 HOH D 38 6111 6111 HOH HOH . L 4 HOH D 39 6112 6112 HOH HOH . L 4 HOH D 40 6114 6114 HOH HOH . L 4 HOH D 41 6117 6117 HOH HOH . L 4 HOH D 42 6126 6126 HOH HOH . L 4 HOH D 43 6130 6130 HOH HOH . L 4 HOH D 44 6138 6138 HOH HOH . L 4 HOH D 45 6140 6140 HOH HOH . L 4 HOH D 46 6145 6145 HOH HOH . L 4 HOH D 47 6148 6148 HOH HOH . L 4 HOH D 48 6159 6159 HOH HOH . L 4 HOH D 49 6169 6169 HOH HOH . L 4 HOH D 50 6170 6170 HOH HOH . L 4 HOH D 51 6175 6175 HOH HOH . L 4 HOH D 52 6179 6179 HOH HOH . L 4 HOH D 53 6184 6184 HOH HOH . L 4 HOH D 54 6191 6191 HOH HOH . L 4 HOH D 55 6192 6192 HOH HOH . L 4 HOH D 56 6193 6193 HOH HOH . L 4 HOH D 57 6194 6194 HOH HOH . L 4 HOH D 58 6198 6198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTQ . . . G 3 19.36 -3.113 5.383 1 28.34 ? C11 BTQ 5300 C 1 HETATM 2 O O11 BTQ . . . G 3 19.994 -3.994 6.025 1 24.66 ? O11 BTQ 5300 C 1 HETATM 3 O O12 BTQ . . . G 3 18.131 -2.941 5.592 1 23.3 ? O12 BTQ 5300 C 1 HETATM 4 C C10 BTQ . . . G 3 20.144 -2.389 4.36 1 31.1 ? C10 BTQ 5300 C 1 HETATM 5 C C9 BTQ . . . G 3 20.752 -1.082 4.814 1 36.07 ? C9 BTQ 5300 C 1 HETATM 6 C C8 BTQ . . . G 3 22.005 -1.186 5.65 1 33.65 ? C8 BTQ 5300 C 1 HETATM 7 C C7 BTQ . . . G 3 21.943 -0.487 7.014 1 27.85 ? C7 BTQ 5300 C 1 HETATM 8 C C2 BTQ . . . G 3 22.612 0.771 7.327 1 25.74 ? C2 BTQ 5300 C 1 HETATM 9 S S1 BTQ . . . G 3 21.829 2.397 7.182 1 18.19 ? S1 BTQ 5300 C 1 HETATM 10 C C6 BTQ . . . G 3 22.366 2.829 8.868 1 17.45 ? C6 BTQ 5300 C 1 HETATM 11 C C5 BTQ . . . G 3 23.742 2.213 9.078 1 14.5 ? C5 BTQ 5300 C 1 HETATM 12 N N1 BTQ . . . G 3 24.81 3.073 8.599 1 13.88 ? N1 BTQ 5300 C 1 HETATM 13 C C3 BTQ . . . G 3 25.495 2.521 7.591 1 15.97 ? C3 BTQ 5300 C 1 HETATM 14 O O3 BTQ . . . G 3 26.479 2.995 6.967 1 14.18 ? O3 BTQ 5300 C 1 HETATM 15 N N2 BTQ . . . G 3 24.98 1.311 7.308 1 11.72 ? N2 BTQ 5300 C 1 HETATM 16 C C4 BTQ . . . G 3 23.859 0.964 8.163 1 15.1 ? C4 BTQ 5300 C 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #