data_1SWV # _model_server_result.job_id l_M8mmq7UCQXR0Ob8aT7iw _model_server_result.datetime_utc '2024-11-14 20:41:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1swv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1SWV # _exptl.entry_id 1SWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.76 _cell.angle_gamma 90 _cell.entry_id 1SWV _cell.length_a 64.503 _cell.length_b 62.553 _cell.length_c 73.759 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 14 A ALA 14 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc2 A OD1 ASP 186 A ASP 186 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc3 A OD2 ASP 190 A ASP 190 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc4 C MG MG . A MG 501 1_555 E O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 B O ALA 14 B ALA 14 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc6 B OD1 ASP 186 B ASP 186 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc7 B OD2 ASP 190 B ASP 190 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc8 D MG MG . B MG 502 1_555 F O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc9 D MG MG . B MG 502 1_555 F O HOH . B HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc10 D MG MG . B MG 502 1_555 F O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SWV _atom_sites.fract_transf_matrix[1][1] 0.015503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 2 MG B 1 502 502 MG MG . E 3 HOH A 1 502 1 HOH HOH . E 3 HOH A 2 503 7 HOH HOH . E 3 HOH A 3 504 8 HOH HOH . E 3 HOH A 4 505 9 HOH HOH . E 3 HOH A 5 506 10 HOH HOH . E 3 HOH A 6 507 11 HOH HOH . E 3 HOH A 7 508 14 HOH HOH . E 3 HOH A 8 509 15 HOH HOH . E 3 HOH A 9 510 16 HOH HOH . E 3 HOH A 10 511 18 HOH HOH . E 3 HOH A 11 512 19 HOH HOH . E 3 HOH A 12 513 20 HOH HOH . E 3 HOH A 13 514 21 HOH HOH . E 3 HOH A 14 515 22 HOH HOH . E 3 HOH A 15 516 23 HOH HOH . E 3 HOH A 16 517 24 HOH HOH . E 3 HOH A 17 518 25 HOH HOH . E 3 HOH A 18 519 29 HOH HOH . E 3 HOH A 19 520 31 HOH HOH . E 3 HOH A 20 521 32 HOH HOH . E 3 HOH A 21 522 33 HOH HOH . E 3 HOH A 22 523 34 HOH HOH . E 3 HOH A 23 524 35 HOH HOH . E 3 HOH A 24 525 38 HOH HOH . E 3 HOH A 25 526 39 HOH HOH . E 3 HOH A 26 527 40 HOH HOH . E 3 HOH A 27 528 41 HOH HOH . E 3 HOH A 28 529 43 HOH HOH . E 3 HOH A 29 530 46 HOH HOH . E 3 HOH A 30 531 47 HOH HOH . E 3 HOH A 31 532 50 HOH HOH . E 3 HOH A 32 533 51 HOH HOH . E 3 HOH A 33 534 53 HOH HOH . E 3 HOH A 34 535 54 HOH HOH . E 3 HOH A 35 536 56 HOH HOH . E 3 HOH A 36 537 57 HOH HOH . E 3 HOH A 37 538 58 HOH HOH . E 3 HOH A 38 539 59 HOH HOH . E 3 HOH A 39 540 60 HOH HOH . E 3 HOH A 40 541 61 HOH HOH . E 3 HOH A 41 542 62 HOH HOH . E 3 HOH A 42 543 65 HOH HOH . E 3 HOH A 43 544 66 HOH HOH . E 3 HOH A 44 545 69 HOH HOH . E 3 HOH A 45 546 70 HOH HOH . E 3 HOH A 46 547 73 HOH HOH . E 3 HOH A 47 548 74 HOH HOH . E 3 HOH A 48 549 77 HOH HOH . E 3 HOH A 49 550 78 HOH HOH . E 3 HOH A 50 551 80 HOH HOH . E 3 HOH A 51 552 82 HOH HOH . E 3 HOH A 52 553 84 HOH HOH . E 3 HOH A 53 554 85 HOH HOH . E 3 HOH A 54 555 86 HOH HOH . E 3 HOH A 55 556 87 HOH HOH . E 3 HOH A 56 557 89 HOH HOH . E 3 HOH A 57 558 90 HOH HOH . E 3 HOH A 58 559 93 HOH HOH . E 3 HOH A 59 560 94 HOH HOH . E 3 HOH A 60 561 95 HOH HOH . E 3 HOH A 61 562 96 HOH HOH . E 3 HOH A 62 563 98 HOH HOH . E 3 HOH A 63 564 99 HOH HOH . E 3 HOH A 64 565 100 HOH HOH . E 3 HOH A 65 566 101 HOH HOH . E 3 HOH A 66 567 106 HOH HOH . E 3 HOH A 67 568 107 HOH HOH . E 3 HOH A 68 569 110 HOH HOH . E 3 HOH A 69 570 111 HOH HOH . E 3 HOH A 70 571 113 HOH HOH . E 3 HOH A 71 572 114 HOH HOH . E 3 HOH A 72 573 116 HOH HOH . E 3 HOH A 73 574 118 HOH HOH . E 3 HOH A 74 575 122 HOH HOH . E 3 HOH A 75 576 125 HOH HOH . E 3 HOH A 76 577 130 HOH HOH . E 3 HOH A 77 578 131 HOH HOH . E 3 HOH A 78 579 135 HOH HOH . E 3 HOH A 79 580 138 HOH HOH . E 3 HOH A 80 581 139 HOH HOH . E 3 HOH A 81 582 142 HOH HOH . E 3 HOH A 82 583 143 HOH HOH . E 3 HOH A 83 584 144 HOH HOH . E 3 HOH A 84 585 151 HOH HOH . E 3 HOH A 85 586 153 HOH HOH . E 3 HOH A 86 587 154 HOH HOH . E 3 HOH A 87 588 155 HOH HOH . E 3 HOH A 88 589 156 HOH HOH . E 3 HOH A 89 590 160 HOH HOH . E 3 HOH A 90 591 161 HOH HOH . E 3 HOH A 91 592 163 HOH HOH . E 3 HOH A 92 593 164 HOH HOH . E 3 HOH A 93 594 165 HOH HOH . E 3 HOH A 94 595 166 HOH HOH . E 3 HOH A 95 596 167 HOH HOH . E 3 HOH A 96 597 169 HOH HOH . E 3 HOH A 97 598 174 HOH HOH . E 3 HOH A 98 599 177 HOH HOH . E 3 HOH A 99 600 179 HOH HOH . E 3 HOH A 100 601 181 HOH HOH . E 3 HOH A 101 602 182 HOH HOH . E 3 HOH A 102 603 183 HOH HOH . E 3 HOH A 103 604 184 HOH HOH . E 3 HOH A 104 605 185 HOH HOH . E 3 HOH A 105 606 186 HOH HOH . E 3 HOH A 106 607 188 HOH HOH . E 3 HOH A 107 608 189 HOH HOH . E 3 HOH A 108 609 190 HOH HOH . E 3 HOH A 109 610 192 HOH HOH . E 3 HOH A 110 611 193 HOH HOH . E 3 HOH A 111 612 195 HOH HOH . E 3 HOH A 112 613 197 HOH HOH . E 3 HOH A 113 614 201 HOH HOH . E 3 HOH A 114 615 205 HOH HOH . E 3 HOH A 115 616 208 HOH HOH . E 3 HOH A 116 617 210 HOH HOH . E 3 HOH A 117 618 211 HOH HOH . E 3 HOH A 118 619 212 HOH HOH . E 3 HOH A 119 620 213 HOH HOH . E 3 HOH A 120 621 214 HOH HOH . E 3 HOH A 121 622 215 HOH HOH . E 3 HOH A 122 623 217 HOH HOH . E 3 HOH A 123 624 218 HOH HOH . E 3 HOH A 124 625 220 HOH HOH . E 3 HOH A 125 626 224 HOH HOH . E 3 HOH A 126 627 225 HOH HOH . E 3 HOH A 127 628 226 HOH HOH . E 3 HOH A 128 629 227 HOH HOH . E 3 HOH A 129 630 229 HOH HOH . E 3 HOH A 130 631 230 HOH HOH . E 3 HOH A 131 632 233 HOH HOH . E 3 HOH A 132 633 234 HOH HOH . F 3 HOH B 1 503 2 HOH HOH . F 3 HOH B 2 504 3 HOH HOH . F 3 HOH B 3 505 5 HOH HOH . F 3 HOH B 4 506 12 HOH HOH . F 3 HOH B 5 507 13 HOH HOH . F 3 HOH B 6 508 17 HOH HOH . F 3 HOH B 7 509 26 HOH HOH . F 3 HOH B 8 510 27 HOH HOH . F 3 HOH B 9 511 28 HOH HOH . F 3 HOH B 10 512 30 HOH HOH . F 3 HOH B 11 513 36 HOH HOH . F 3 HOH B 12 514 37 HOH HOH . F 3 HOH B 13 515 42 HOH HOH . F 3 HOH B 14 516 44 HOH HOH . F 3 HOH B 15 517 45 HOH HOH . F 3 HOH B 16 518 48 HOH HOH . F 3 HOH B 17 519 49 HOH HOH . F 3 HOH B 18 520 52 HOH HOH . F 3 HOH B 19 521 55 HOH HOH . F 3 HOH B 20 522 64 HOH HOH . F 3 HOH B 21 523 67 HOH HOH . F 3 HOH B 22 524 68 HOH HOH . F 3 HOH B 23 525 71 HOH HOH . F 3 HOH B 24 526 72 HOH HOH . F 3 HOH B 25 527 75 HOH HOH . F 3 HOH B 26 528 76 HOH HOH . F 3 HOH B 27 529 79 HOH HOH . F 3 HOH B 28 530 81 HOH HOH . F 3 HOH B 29 531 83 HOH HOH . F 3 HOH B 30 532 88 HOH HOH . F 3 HOH B 31 533 91 HOH HOH . F 3 HOH B 32 534 92 HOH HOH . F 3 HOH B 33 535 97 HOH HOH . F 3 HOH B 34 536 102 HOH HOH . F 3 HOH B 35 537 103 HOH HOH . F 3 HOH B 36 538 104 HOH HOH . F 3 HOH B 37 539 105 HOH HOH . F 3 HOH B 38 540 108 HOH HOH . F 3 HOH B 39 541 109 HOH HOH . F 3 HOH B 40 542 112 HOH HOH . F 3 HOH B 41 543 115 HOH HOH . F 3 HOH B 42 544 117 HOH HOH . F 3 HOH B 43 545 119 HOH HOH . F 3 HOH B 44 546 120 HOH HOH . F 3 HOH B 45 547 121 HOH HOH . F 3 HOH B 46 548 123 HOH HOH . F 3 HOH B 47 549 124 HOH HOH . F 3 HOH B 48 550 126 HOH HOH . F 3 HOH B 49 551 127 HOH HOH . F 3 HOH B 50 552 128 HOH HOH . F 3 HOH B 51 553 129 HOH HOH . F 3 HOH B 52 554 132 HOH HOH . F 3 HOH B 53 555 133 HOH HOH . F 3 HOH B 54 556 134 HOH HOH . F 3 HOH B 55 557 136 HOH HOH . F 3 HOH B 56 558 137 HOH HOH . F 3 HOH B 57 559 140 HOH HOH . F 3 HOH B 58 560 141 HOH HOH . F 3 HOH B 59 561 145 HOH HOH . F 3 HOH B 60 562 146 HOH HOH . F 3 HOH B 61 563 147 HOH HOH . F 3 HOH B 62 564 148 HOH HOH . F 3 HOH B 63 565 149 HOH HOH . F 3 HOH B 64 566 150 HOH HOH . F 3 HOH B 65 567 152 HOH HOH . F 3 HOH B 66 568 157 HOH HOH . F 3 HOH B 67 569 158 HOH HOH . F 3 HOH B 68 570 159 HOH HOH . F 3 HOH B 69 571 162 HOH HOH . F 3 HOH B 70 572 168 HOH HOH . F 3 HOH B 71 573 170 HOH HOH . F 3 HOH B 72 574 171 HOH HOH . F 3 HOH B 73 575 172 HOH HOH . F 3 HOH B 74 576 173 HOH HOH . F 3 HOH B 75 577 175 HOH HOH . F 3 HOH B 76 578 176 HOH HOH . F 3 HOH B 77 579 178 HOH HOH . F 3 HOH B 78 580 180 HOH HOH . F 3 HOH B 79 581 187 HOH HOH . F 3 HOH B 80 582 191 HOH HOH . F 3 HOH B 81 583 194 HOH HOH . F 3 HOH B 82 584 196 HOH HOH . F 3 HOH B 83 585 198 HOH HOH . F 3 HOH B 84 586 199 HOH HOH . F 3 HOH B 85 587 200 HOH HOH . F 3 HOH B 86 588 202 HOH HOH . F 3 HOH B 87 589 203 HOH HOH . F 3 HOH B 88 590 204 HOH HOH . F 3 HOH B 89 591 206 HOH HOH . F 3 HOH B 90 592 207 HOH HOH . F 3 HOH B 91 593 209 HOH HOH . F 3 HOH B 92 594 216 HOH HOH . F 3 HOH B 93 595 219 HOH HOH . F 3 HOH B 94 596 221 HOH HOH . F 3 HOH B 95 597 222 HOH HOH . F 3 HOH B 96 598 223 HOH HOH . F 3 HOH B 97 599 228 HOH HOH . F 3 HOH B 98 600 231 HOH HOH . F 3 HOH B 99 601 232 HOH HOH . F 3 HOH B 100 602 235 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 35.989 _atom_site.Cartn_y -0.019 _atom_site.Cartn_z 42.555 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #