data_1SWW # _model_server_result.job_id tWDixGuPxHisodFmOBR8NA _model_server_result.datetime_utc '2024-11-30 23:13:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":700}' # _entry.id 1SWW # _exptl.entry_id 1SWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 124.032 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHONOACETALDEHYDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.03 _cell.angle_gamma 90 _cell.entry_id 1SWW _cell.length_a 63.815 _cell.length_b 62.52 _cell.length_c 72.618 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 14 A ALA 14 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc2 A OD1 ASP 186 A ASP 186 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc3 A OD2 ASP 190 A ASP 190 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc4 C MG MG . A MG 501 1_555 D O1P POA . A POA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 C MG MG . A MG 501 1_555 G O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc6 B OD1 ASP 186 B ASP 186 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc7 B OD2 ASP 190 B ASP 190 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc8 E MG MG . B MG 502 1_555 F O2P POA . B POA 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 E MG MG . B MG 502 1_555 F O1P POA . B POA 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 E MG MG . B MG 502 1_555 H O HOH . B HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'C2 H5 O4 P' _chem_comp.formula_weight 124.032 _chem_comp.id POA _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHONOACETALDEHYDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 POA sing 260 n n C1 P POA sing 261 n n C1 H11 POA sing 262 n n C1 H12 POA sing 263 n n C2 O2 POA doub 264 n n C2 H2 POA sing 265 n n O1P P POA doub 266 n n O2P P POA sing 267 n n O2P H2P POA sing 268 n n O3P P POA sing 269 n n O3P H3P POA sing 270 n n # _atom_sites.entry_id 1SWW _atom_sites.fract_transf_matrix[1][1] 0.01567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 3 POA A 1 600 600 POA POA . E 2 MG B 1 502 502 MG MG . F 3 POA B 1 700 700 POA POA . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 4 HOH HOH . G 4 HOH A 3 603 5 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 9 HOH HOH . G 4 HOH A 6 606 11 HOH HOH . G 4 HOH A 7 607 13 HOH HOH . G 4 HOH A 8 608 15 HOH HOH . G 4 HOH A 9 609 16 HOH HOH . G 4 HOH A 10 610 18 HOH HOH . G 4 HOH A 11 611 19 HOH HOH . G 4 HOH A 12 612 22 HOH HOH . G 4 HOH A 13 613 24 HOH HOH . G 4 HOH A 14 614 27 HOH HOH . G 4 HOH A 15 615 28 HOH HOH . G 4 HOH A 16 616 30 HOH HOH . G 4 HOH A 17 617 31 HOH HOH . G 4 HOH A 18 618 32 HOH HOH . G 4 HOH A 19 619 33 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 38 HOH HOH . G 4 HOH A 22 622 41 HOH HOH . G 4 HOH A 23 623 42 HOH HOH . G 4 HOH A 24 624 44 HOH HOH . G 4 HOH A 25 625 45 HOH HOH . G 4 HOH A 26 626 47 HOH HOH . G 4 HOH A 27 627 48 HOH HOH . G 4 HOH A 28 628 50 HOH HOH . G 4 HOH A 29 629 52 HOH HOH . G 4 HOH A 30 630 54 HOH HOH . G 4 HOH A 31 631 55 HOH HOH . G 4 HOH A 32 632 57 HOH HOH . G 4 HOH A 33 633 61 HOH HOH . G 4 HOH A 34 634 63 HOH HOH . G 4 HOH A 35 635 64 HOH HOH . G 4 HOH A 36 636 65 HOH HOH . G 4 HOH A 37 637 67 HOH HOH . G 4 HOH A 38 638 71 HOH HOH . G 4 HOH A 39 639 72 HOH HOH . G 4 HOH A 40 640 73 HOH HOH . G 4 HOH A 41 641 74 HOH HOH . G 4 HOH A 42 642 75 HOH HOH . G 4 HOH A 43 643 76 HOH HOH . G 4 HOH A 44 644 81 HOH HOH . G 4 HOH A 45 645 83 HOH HOH . G 4 HOH A 46 646 85 HOH HOH . G 4 HOH A 47 647 87 HOH HOH . G 4 HOH A 48 648 88 HOH HOH . G 4 HOH A 49 649 89 HOH HOH . G 4 HOH A 50 650 90 HOH HOH . G 4 HOH A 51 651 91 HOH HOH . G 4 HOH A 52 652 92 HOH HOH . G 4 HOH A 53 653 94 HOH HOH . G 4 HOH A 54 654 95 HOH HOH . G 4 HOH A 55 655 97 HOH HOH . G 4 HOH A 56 656 98 HOH HOH . G 4 HOH A 57 657 100 HOH HOH . G 4 HOH A 58 658 101 HOH HOH . G 4 HOH A 59 659 103 HOH HOH . G 4 HOH A 60 660 106 HOH HOH . G 4 HOH A 61 661 108 HOH HOH . G 4 HOH A 62 662 111 HOH HOH . G 4 HOH A 63 663 112 HOH HOH . G 4 HOH A 64 664 114 HOH HOH . G 4 HOH A 65 665 115 HOH HOH . G 4 HOH A 66 666 117 HOH HOH . G 4 HOH A 67 667 118 HOH HOH . G 4 HOH A 68 668 120 HOH HOH . G 4 HOH A 69 669 121 HOH HOH . G 4 HOH A 70 670 124 HOH HOH . G 4 HOH A 71 671 125 HOH HOH . G 4 HOH A 72 672 127 HOH HOH . G 4 HOH A 73 673 129 HOH HOH . G 4 HOH A 74 674 130 HOH HOH . G 4 HOH A 75 675 135 HOH HOH . G 4 HOH A 76 676 140 HOH HOH . G 4 HOH A 77 677 143 HOH HOH . G 4 HOH A 78 678 144 HOH HOH . G 4 HOH A 79 679 145 HOH HOH . G 4 HOH A 80 680 148 HOH HOH . G 4 HOH A 81 681 149 HOH HOH . G 4 HOH A 82 682 150 HOH HOH . G 4 HOH A 83 683 151 HOH HOH . G 4 HOH A 84 684 152 HOH HOH . G 4 HOH A 85 685 154 HOH HOH . G 4 HOH A 86 686 155 HOH HOH . G 4 HOH A 87 687 156 HOH HOH . G 4 HOH A 88 688 161 HOH HOH . G 4 HOH A 89 689 162 HOH HOH . G 4 HOH A 90 690 163 HOH HOH . G 4 HOH A 91 691 165 HOH HOH . G 4 HOH A 92 692 166 HOH HOH . G 4 HOH A 93 693 167 HOH HOH . G 4 HOH A 94 694 168 HOH HOH . G 4 HOH A 95 695 169 HOH HOH . G 4 HOH A 96 696 171 HOH HOH . G 4 HOH A 97 697 172 HOH HOH . G 4 HOH A 98 698 176 HOH HOH . G 4 HOH A 99 699 177 HOH HOH . G 4 HOH A 100 700 178 HOH HOH . G 4 HOH A 101 701 179 HOH HOH . G 4 HOH A 102 702 180 HOH HOH . G 4 HOH A 103 703 181 HOH HOH . G 4 HOH A 104 704 182 HOH HOH . G 4 HOH A 105 705 185 HOH HOH . G 4 HOH A 106 706 186 HOH HOH . G 4 HOH A 107 707 189 HOH HOH . G 4 HOH A 108 708 190 HOH HOH . G 4 HOH A 109 709 192 HOH HOH . G 4 HOH A 110 710 193 HOH HOH . G 4 HOH A 111 711 194 HOH HOH . G 4 HOH A 112 712 197 HOH HOH . G 4 HOH A 113 713 200 HOH HOH . G 4 HOH A 114 714 202 HOH HOH . G 4 HOH A 115 715 204 HOH HOH . G 4 HOH A 116 716 206 HOH HOH . G 4 HOH A 117 717 207 HOH HOH . G 4 HOH A 118 718 208 HOH HOH . G 4 HOH A 119 719 210 HOH HOH . G 4 HOH A 120 720 211 HOH HOH . G 4 HOH A 121 721 213 HOH HOH . G 4 HOH A 122 722 216 HOH HOH . G 4 HOH A 123 723 219 HOH HOH . G 4 HOH A 124 724 221 HOH HOH . G 4 HOH A 125 725 224 HOH HOH . G 4 HOH A 126 726 225 HOH HOH . G 4 HOH A 127 727 226 HOH HOH . G 4 HOH A 128 728 227 HOH HOH . G 4 HOH A 129 729 229 HOH HOH . G 4 HOH A 130 730 230 HOH HOH . G 4 HOH A 131 731 231 HOH HOH . G 4 HOH A 132 732 233 HOH HOH . G 4 HOH A 133 733 234 HOH HOH . G 4 HOH A 134 734 236 HOH HOH . G 4 HOH A 135 735 238 HOH HOH . G 4 HOH A 136 736 240 HOH HOH . G 4 HOH A 137 737 241 HOH HOH . G 4 HOH A 138 738 242 HOH HOH . G 4 HOH A 139 739 244 HOH HOH . G 4 HOH A 140 740 245 HOH HOH . H 4 HOH B 1 701 10 HOH HOH . H 4 HOH B 2 702 12 HOH HOH . H 4 HOH B 3 703 14 HOH HOH . H 4 HOH B 4 704 17 HOH HOH . H 4 HOH B 5 705 20 HOH HOH . H 4 HOH B 6 706 23 HOH HOH . H 4 HOH B 7 707 25 HOH HOH . H 4 HOH B 8 708 26 HOH HOH . H 4 HOH B 9 709 29 HOH HOH . H 4 HOH B 10 710 35 HOH HOH . H 4 HOH B 11 711 36 HOH HOH . H 4 HOH B 12 712 43 HOH HOH . H 4 HOH B 13 713 46 HOH HOH . H 4 HOH B 14 714 51 HOH HOH . H 4 HOH B 15 715 53 HOH HOH . H 4 HOH B 16 716 58 HOH HOH . H 4 HOH B 17 717 59 HOH HOH . H 4 HOH B 18 718 60 HOH HOH . H 4 HOH B 19 719 62 HOH HOH . H 4 HOH B 20 720 66 HOH HOH . H 4 HOH B 21 721 68 HOH HOH . H 4 HOH B 22 722 69 HOH HOH . H 4 HOH B 23 723 70 HOH HOH . H 4 HOH B 24 724 77 HOH HOH . H 4 HOH B 25 725 78 HOH HOH . H 4 HOH B 26 726 79 HOH HOH . H 4 HOH B 27 727 80 HOH HOH . H 4 HOH B 28 728 82 HOH HOH . H 4 HOH B 29 729 84 HOH HOH . H 4 HOH B 30 730 86 HOH HOH . H 4 HOH B 31 731 93 HOH HOH . H 4 HOH B 32 732 96 HOH HOH . H 4 HOH B 33 733 99 HOH HOH . H 4 HOH B 34 734 102 HOH HOH . H 4 HOH B 35 735 104 HOH HOH . H 4 HOH B 36 736 105 HOH HOH . H 4 HOH B 37 737 107 HOH HOH . H 4 HOH B 38 738 109 HOH HOH . H 4 HOH B 39 739 110 HOH HOH . H 4 HOH B 40 740 113 HOH HOH . H 4 HOH B 41 741 116 HOH HOH . H 4 HOH B 42 742 119 HOH HOH . H 4 HOH B 43 743 122 HOH HOH . H 4 HOH B 44 744 123 HOH HOH . H 4 HOH B 45 745 126 HOH HOH . H 4 HOH B 46 746 128 HOH HOH . H 4 HOH B 47 747 131 HOH HOH . H 4 HOH B 48 748 132 HOH HOH . H 4 HOH B 49 749 133 HOH HOH . H 4 HOH B 50 750 134 HOH HOH . H 4 HOH B 51 751 136 HOH HOH . H 4 HOH B 52 752 137 HOH HOH . H 4 HOH B 53 753 138 HOH HOH . H 4 HOH B 54 754 139 HOH HOH . H 4 HOH B 55 755 141 HOH HOH . H 4 HOH B 56 756 142 HOH HOH . H 4 HOH B 57 757 146 HOH HOH . H 4 HOH B 58 758 147 HOH HOH . H 4 HOH B 59 759 153 HOH HOH . H 4 HOH B 60 760 157 HOH HOH . H 4 HOH B 61 761 158 HOH HOH . H 4 HOH B 62 762 159 HOH HOH . H 4 HOH B 63 763 160 HOH HOH . H 4 HOH B 64 764 164 HOH HOH . H 4 HOH B 65 765 170 HOH HOH . H 4 HOH B 66 766 173 HOH HOH . H 4 HOH B 67 767 174 HOH HOH . H 4 HOH B 68 768 175 HOH HOH . H 4 HOH B 69 769 183 HOH HOH . H 4 HOH B 70 770 184 HOH HOH . H 4 HOH B 71 771 187 HOH HOH . H 4 HOH B 72 772 188 HOH HOH . H 4 HOH B 73 773 191 HOH HOH . H 4 HOH B 74 774 195 HOH HOH . H 4 HOH B 75 775 196 HOH HOH . H 4 HOH B 76 776 198 HOH HOH . H 4 HOH B 77 777 199 HOH HOH . H 4 HOH B 78 778 201 HOH HOH . H 4 HOH B 79 779 203 HOH HOH . H 4 HOH B 80 780 205 HOH HOH . H 4 HOH B 81 781 209 HOH HOH . H 4 HOH B 82 782 212 HOH HOH . H 4 HOH B 83 783 214 HOH HOH . H 4 HOH B 84 784 215 HOH HOH . H 4 HOH B 85 785 217 HOH HOH . H 4 HOH B 86 786 218 HOH HOH . H 4 HOH B 87 787 220 HOH HOH . H 4 HOH B 88 788 222 HOH HOH . H 4 HOH B 89 789 223 HOH HOH . H 4 HOH B 90 790 228 HOH HOH . H 4 HOH B 91 791 232 HOH HOH . H 4 HOH B 92 792 235 HOH HOH . H 4 HOH B 93 793 237 HOH HOH . H 4 HOH B 94 794 239 HOH HOH . H 4 HOH B 95 795 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 POA . . . F 3 32.951 -2.869 42.423 1 53.3 ? C1 POA 700 B 1 HETATM 2 C C2 POA . . . F 3 33.603 -4.24 42.598 1 49.47 ? C2 POA 700 B 1 HETATM 3 O O2 POA . . . F 3 34.119 -4.493 43.679 1 52.69 ? O2 POA 700 B 1 HETATM 4 O O1P POA . . . F 3 34.341 -0.471 42.622 1 56.64 ? O1P POA 700 B 1 HETATM 5 O O2P POA . . . F 3 35.573 -2.305 41.37 1 57.02 ? O2P POA 700 B 1 HETATM 6 O O3P POA . . . F 3 33.557 -0.962 40.337 1 55.78 ? O3P POA 700 B 1 HETATM 7 P P POA . . . F 3 34.129 -1.615 41.68 1 53.39 ? P POA 700 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #