data_1SX4 # _model_server_result.job_id JIK0FGbZP6NBicyZB-vYTw _model_server_result.datetime_utc '2024-12-26 03:44:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":601}' # _entry.id 1SX4 # _exptl.entry_id 1SX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SX4 _cell.length_a 255.26 _cell.length_b 265.25 _cell.length_c 184.4 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 V N N ? 3 X N N ? 3 Z N N ? 3 BA N N ? 3 DA N N ? 3 FA N N ? 3 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 86 A ASP 87 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 W O1B ADP . A ADP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc3 W O2A ADP . A ADP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? metalc ? metalc4 W O3B ADP . A ADP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc5 B OD1 ASP 86 B ASP 87 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 Y O1B ADP . B ADP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc7 Y O2A ADP . B ADP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc8 C OD1 ASP 86 C ASP 87 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc9 AA O2A ADP . C ADP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc10 AA O1B ADP . C ADP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc11 D OD1 ASP 86 D ASP 87 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc12 CA O2A ADP . D ADP 600 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.693 ? metalc ? metalc13 CA O1B ADP . D ADP 600 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc14 CA O3B ADP . D ADP 600 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc15 E OD1 ASP 86 E ASP 87 1_555 DA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc16 EA O2A ADP . E ADP 600 1_555 DA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc17 EA O1B ADP . E ADP 600 1_555 DA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc18 EA O3B ADP . E ADP 600 1_555 DA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc19 F OD1 ASP 86 F ASP 87 1_555 FA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc20 GA O2A ADP . F ADP 600 1_555 FA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.573 ? metalc ? metalc21 GA O1B ADP . F ADP 600 1_555 FA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc22 G OD1 ASP 86 G ASP 87 1_555 HA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc23 IA O1B ADP . G ADP 600 1_555 HA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc24 IA O2A ADP . G ADP 600 1_555 HA MG MG . G MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SX4 _atom_sites.fract_transf_matrix[1][1] 0.003918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 3 MG A 1 601 601 MG MG . W 4 ADP A 1 600 600 ADP ADP . X 3 MG B 1 601 601 MG MG . Y 4 ADP B 1 600 600 ADP ADP . Z 3 MG C 1 601 601 MG MG . AA 4 ADP C 1 600 600 ADP ADP . BA 3 MG D 1 601 601 MG MG . CA 4 ADP D 1 600 600 ADP ADP . DA 3 MG E 1 601 601 MG MG . EA 4 ADP E 1 600 600 ADP ADP . FA 3 MG F 1 601 601 MG MG . GA 4 ADP F 1 600 600 ADP ADP . HA 3 MG G 1 601 601 MG MG . IA 4 ADP G 1 600 600 ADP ADP . JA 5 HOH A 1 602 120 HOH HOH . JA 5 HOH A 2 603 128 HOH HOH . JA 5 HOH A 3 604 212 HOH HOH . JA 5 HOH A 4 605 297 HOH HOH . JA 5 HOH A 5 606 372 HOH HOH . JA 5 HOH A 6 607 426 HOH HOH . JA 5 HOH A 7 608 463 HOH HOH . JA 5 HOH A 8 609 526 HOH HOH . JA 5 HOH A 9 610 545 HOH HOH . JA 5 HOH A 10 611 712 HOH HOH . JA 5 HOH A 11 612 739 HOH HOH . JA 5 HOH A 12 613 767 HOH HOH . KA 5 HOH B 1 602 121 HOH HOH . KA 5 HOH B 2 603 153 HOH HOH . KA 5 HOH B 3 604 166 HOH HOH . KA 5 HOH B 4 605 198 HOH HOH . KA 5 HOH B 5 606 242 HOH HOH . KA 5 HOH B 6 607 323 HOH HOH . KA 5 HOH B 7 608 337 HOH HOH . KA 5 HOH B 8 609 451 HOH HOH . KA 5 HOH B 9 610 761 HOH HOH . KA 5 HOH B 10 611 766 HOH HOH . LA 5 HOH C 1 602 156 HOH HOH . LA 5 HOH C 2 603 158 HOH HOH . LA 5 HOH C 3 604 195 HOH HOH . LA 5 HOH C 4 605 260 HOH HOH . LA 5 HOH C 5 606 275 HOH HOH . LA 5 HOH C 6 607 470 HOH HOH . LA 5 HOH C 7 608 534 HOH HOH . LA 5 HOH C 8 609 535 HOH HOH . LA 5 HOH C 9 610 582 HOH HOH . LA 5 HOH C 10 611 660 HOH HOH . LA 5 HOH C 11 612 713 HOH HOH . MA 5 HOH D 1 602 113 HOH HOH . MA 5 HOH D 2 603 176 HOH HOH . MA 5 HOH D 3 604 187 HOH HOH . MA 5 HOH D 4 605 276 HOH HOH . MA 5 HOH D 5 606 286 HOH HOH . MA 5 HOH D 6 607 319 HOH HOH . MA 5 HOH D 7 608 377 HOH HOH . MA 5 HOH D 8 609 521 HOH HOH . MA 5 HOH D 9 610 587 HOH HOH . MA 5 HOH D 10 611 636 HOH HOH . MA 5 HOH D 11 612 720 HOH HOH . NA 5 HOH E 1 602 114 HOH HOH . NA 5 HOH E 2 603 180 HOH HOH . NA 5 HOH E 3 604 210 HOH HOH . NA 5 HOH E 4 605 285 HOH HOH . NA 5 HOH E 5 606 407 HOH HOH . NA 5 HOH E 6 607 477 HOH HOH . NA 5 HOH E 7 608 478 HOH HOH . NA 5 HOH E 8 609 566 HOH HOH . NA 5 HOH E 9 610 625 HOH HOH . NA 5 HOH E 10 611 726 HOH HOH . OA 5 HOH F 1 602 135 HOH HOH . OA 5 HOH F 2 603 138 HOH HOH . OA 5 HOH F 3 604 157 HOH HOH . OA 5 HOH F 4 605 165 HOH HOH . OA 5 HOH F 5 606 185 HOH HOH . OA 5 HOH F 6 607 233 HOH HOH . OA 5 HOH F 7 608 243 HOH HOH . OA 5 HOH F 8 609 360 HOH HOH . PA 5 HOH G 1 602 125 HOH HOH . PA 5 HOH G 2 603 131 HOH HOH . PA 5 HOH G 3 604 199 HOH HOH . PA 5 HOH G 4 605 203 HOH HOH . PA 5 HOH G 5 606 208 HOH HOH . PA 5 HOH G 6 607 235 HOH HOH . PA 5 HOH G 7 608 253 HOH HOH . PA 5 HOH G 8 609 262 HOH HOH . PA 5 HOH G 9 610 265 HOH HOH . PA 5 HOH G 10 611 541 HOH HOH . PA 5 HOH G 11 612 586 HOH HOH . PA 5 HOH G 12 613 589 HOH HOH . PA 5 HOH G 13 614 691 HOH HOH . QA 5 HOH H 1 526 105 HOH HOH . QA 5 HOH H 2 527 117 HOH HOH . QA 5 HOH H 3 528 119 HOH HOH . QA 5 HOH H 4 529 205 HOH HOH . QA 5 HOH H 5 530 211 HOH HOH . QA 5 HOH H 6 531 322 HOH HOH . QA 5 HOH H 7 532 400 HOH HOH . QA 5 HOH H 8 533 427 HOH HOH . QA 5 HOH H 9 534 448 HOH HOH . QA 5 HOH H 10 535 459 HOH HOH . QA 5 HOH H 11 536 593 HOH HOH . QA 5 HOH H 12 537 735 HOH HOH . RA 5 HOH I 1 526 100 HOH HOH . RA 5 HOH I 2 527 104 HOH HOH . RA 5 HOH I 3 528 140 HOH HOH . RA 5 HOH I 4 529 147 HOH HOH . RA 5 HOH I 5 530 202 HOH HOH . RA 5 HOH I 6 531 231 HOH HOH . RA 5 HOH I 7 532 236 HOH HOH . RA 5 HOH I 8 533 292 HOH HOH . RA 5 HOH I 9 534 343 HOH HOH . RA 5 HOH I 10 535 368 HOH HOH . RA 5 HOH I 11 536 397 HOH HOH . RA 5 HOH I 12 537 399 HOH HOH . RA 5 HOH I 13 538 523 HOH HOH . RA 5 HOH I 14 539 550 HOH HOH . RA 5 HOH I 15 540 579 HOH HOH . RA 5 HOH I 16 541 610 HOH HOH . RA 5 HOH I 17 542 641 HOH HOH . RA 5 HOH I 18 543 650 HOH HOH . RA 5 HOH I 19 544 680 HOH HOH . SA 5 HOH J 1 526 98 HOH HOH . SA 5 HOH J 2 527 106 HOH HOH . SA 5 HOH J 3 528 129 HOH HOH . SA 5 HOH J 4 529 154 HOH HOH . SA 5 HOH J 5 530 224 HOH HOH . SA 5 HOH J 6 531 264 HOH HOH . SA 5 HOH J 7 532 266 HOH HOH . SA 5 HOH J 8 533 365 HOH HOH . SA 5 HOH J 9 534 388 HOH HOH . SA 5 HOH J 10 535 392 HOH HOH . SA 5 HOH J 11 536 434 HOH HOH . SA 5 HOH J 12 537 460 HOH HOH . SA 5 HOH J 13 538 507 HOH HOH . SA 5 HOH J 14 539 647 HOH HOH . TA 5 HOH K 1 526 107 HOH HOH . TA 5 HOH K 2 527 111 HOH HOH . TA 5 HOH K 3 528 112 HOH HOH . TA 5 HOH K 4 529 126 HOH HOH . TA 5 HOH K 5 530 177 HOH HOH . TA 5 HOH K 6 531 241 HOH HOH . TA 5 HOH K 7 532 324 HOH HOH . TA 5 HOH K 8 533 378 HOH HOH . TA 5 HOH K 9 534 380 HOH HOH . TA 5 HOH K 10 535 415 HOH HOH . TA 5 HOH K 11 536 597 HOH HOH . TA 5 HOH K 12 537 600 HOH HOH . TA 5 HOH K 13 538 681 HOH HOH . TA 5 HOH K 14 539 715 HOH HOH . UA 5 HOH L 1 526 101 HOH HOH . UA 5 HOH L 2 527 124 HOH HOH . UA 5 HOH L 3 528 141 HOH HOH . UA 5 HOH L 4 529 152 HOH HOH . UA 5 HOH L 5 530 179 HOH HOH . UA 5 HOH L 6 531 193 HOH HOH . UA 5 HOH L 7 532 219 HOH HOH . UA 5 HOH L 8 533 234 HOH HOH . UA 5 HOH L 9 534 317 HOH HOH . UA 5 HOH L 10 535 393 HOH HOH . UA 5 HOH L 11 536 405 HOH HOH . UA 5 HOH L 12 537 410 HOH HOH . UA 5 HOH L 13 538 474 HOH HOH . UA 5 HOH L 14 539 513 HOH HOH . UA 5 HOH L 15 540 607 HOH HOH . UA 5 HOH L 16 541 639 HOH HOH . VA 5 HOH M 1 526 103 HOH HOH . VA 5 HOH M 2 527 108 HOH HOH . VA 5 HOH M 3 528 155 HOH HOH . VA 5 HOH M 4 529 204 HOH HOH . VA 5 HOH M 5 530 222 HOH HOH . VA 5 HOH M 6 531 252 HOH HOH . VA 5 HOH M 7 532 306 HOH HOH . VA 5 HOH M 8 533 461 HOH HOH . VA 5 HOH M 9 534 499 HOH HOH . VA 5 HOH M 10 535 705 HOH HOH . WA 5 HOH N 1 526 99 HOH HOH . WA 5 HOH N 2 527 102 HOH HOH . WA 5 HOH N 3 528 109 HOH HOH . WA 5 HOH N 4 529 115 HOH HOH . WA 5 HOH N 5 530 116 HOH HOH . WA 5 HOH N 6 531 118 HOH HOH . WA 5 HOH N 7 532 150 HOH HOH . WA 5 HOH N 8 533 167 HOH HOH . WA 5 HOH N 9 534 200 HOH HOH . WA 5 HOH N 10 535 248 HOH HOH . WA 5 HOH N 11 536 259 HOH HOH . WA 5 HOH N 12 537 274 HOH HOH . WA 5 HOH N 13 538 279 HOH HOH . WA 5 HOH N 14 539 307 HOH HOH . WA 5 HOH N 15 540 353 HOH HOH . WA 5 HOH N 16 541 493 HOH HOH . WA 5 HOH N 17 542 514 HOH HOH . WA 5 HOH N 18 543 554 HOH HOH . WA 5 HOH N 19 544 574 HOH HOH . WA 5 HOH N 20 545 624 HOH HOH . WA 5 HOH N 21 546 762 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 3 _atom_site.Cartn_x 126.564 _atom_site.Cartn_y -39.687 _atom_site.Cartn_z -20.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #