data_1SZB # _model_server_result.job_id MiqqZyczW56kklIyFfZaDg _model_server_result.datetime_utc '2024-10-16 10:39:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1szb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1SZB # _exptl.entry_id 1SZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SZB _cell.length_a 67.754 _cell.length_b 67.754 _cell.length_c 187.923 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 67.754 67.754 93.9615 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 127 A CYS 127 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 137 A CYS 137 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 152 A CYS 152 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 127 B CYS 127 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 137 B CYS 137 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 152 B CYS 152 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A OE1 GLU 52 A GLU 52 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A OE2 GLU 52 A GLU 52 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.332 ? metalc ? metalc3 A OD1 ASP 60 A ASP 60 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc4 A OD2 ASP 60 A ASP 60 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc5 A OD1 ASP 105 A ASP 105 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A O SER 107 A SER 107 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc7 A OD1 ASN 108 A ASN 108 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc8 A OD1 ASP 123 A ASP 123 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 A OD2 ASP 123 A ASP 123 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc10 A O ILE 124 A ILE 124 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc11 A OE2 GLU 126 A GLU 126 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 A OD1 ASN 143 A ASN 143 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 A O HIS 144 A HIS 144 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc14 A O GLY 147 A GLY 147 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc15 C CA CA . A CA 1001 1_555 G O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc16 D CA CA . A CA 1003 1_555 G O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc17 B OE1 GLU 52 B GLU 52 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc18 B OD1 ASP 60 B ASP 60 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc19 B OD2 ASP 60 B ASP 60 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc20 B OD1 ASP 105 B ASP 105 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc21 B O SER 107 B SER 107 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc22 B OD1 ASN 108 B ASN 108 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.227 ? metalc ? metalc23 B ND2 ASN 108 B ASN 108 1_555 F CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc24 B OD2 ASP 123 B ASP 123 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc25 B OD1 ASP 123 B ASP 123 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc26 B O ILE 124 B ILE 124 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc27 B OE2 GLU 126 B GLU 126 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc28 B OD1 ASN 143 B ASN 143 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc29 B O HIS 144 B HIS 144 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc30 B N GLY 147 B GLY 147 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.336 ? metalc ? metalc31 B O GLY 147 B GLY 147 1_555 E CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc32 E CA CA . B CA 1002 1_555 H O HOH . B HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SZB _atom_sites.fract_transf_matrix[1][1] 0.014759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1001 1001 CA CA . D 2 CA A 1 1003 1003 CA CA . E 2 CA B 1 1002 1002 CA CA . F 2 CA B 1 1004 1004 CA CA . G 3 HOH A 1 1004 3 HOH HOH . G 3 HOH A 2 1005 5 HOH HOH . G 3 HOH A 3 1006 7 HOH HOH . G 3 HOH A 4 1007 8 HOH HOH . G 3 HOH A 5 1008 9 HOH HOH . G 3 HOH A 6 1009 12 HOH HOH . G 3 HOH A 7 1010 14 HOH HOH . G 3 HOH A 8 1011 15 HOH HOH . G 3 HOH A 9 1012 17 HOH HOH . G 3 HOH A 10 1013 19 HOH HOH . G 3 HOH A 11 1014 20 HOH HOH . G 3 HOH A 12 1015 21 HOH HOH . G 3 HOH A 13 1016 23 HOH HOH . G 3 HOH A 14 1017 24 HOH HOH . G 3 HOH A 15 1018 27 HOH HOH . G 3 HOH A 16 1019 29 HOH HOH . G 3 HOH A 17 1020 32 HOH HOH . G 3 HOH A 18 1021 33 HOH HOH . G 3 HOH A 19 1022 34 HOH HOH . G 3 HOH A 20 1023 35 HOH HOH . G 3 HOH A 21 1024 36 HOH HOH . G 3 HOH A 22 1025 38 HOH HOH . G 3 HOH A 23 1026 39 HOH HOH . G 3 HOH A 24 1027 41 HOH HOH . G 3 HOH A 25 1028 42 HOH HOH . G 3 HOH A 26 1029 43 HOH HOH . G 3 HOH A 27 1030 45 HOH HOH . G 3 HOH A 28 1031 47 HOH HOH . G 3 HOH A 29 1032 49 HOH HOH . G 3 HOH A 30 1033 51 HOH HOH . G 3 HOH A 31 1034 53 HOH HOH . G 3 HOH A 32 1035 55 HOH HOH . G 3 HOH A 33 1036 56 HOH HOH . G 3 HOH A 34 1037 57 HOH HOH . G 3 HOH A 35 1038 59 HOH HOH . G 3 HOH A 36 1039 61 HOH HOH . G 3 HOH A 37 1040 62 HOH HOH . G 3 HOH A 38 1041 65 HOH HOH . G 3 HOH A 39 1042 66 HOH HOH . G 3 HOH A 40 1043 67 HOH HOH . G 3 HOH A 41 1044 68 HOH HOH . G 3 HOH A 42 1045 69 HOH HOH . G 3 HOH A 43 1046 70 HOH HOH . G 3 HOH A 44 1047 73 HOH HOH . G 3 HOH A 45 1048 74 HOH HOH . G 3 HOH A 46 1049 76 HOH HOH . G 3 HOH A 47 1050 77 HOH HOH . G 3 HOH A 48 1051 78 HOH HOH . G 3 HOH A 49 1052 79 HOH HOH . G 3 HOH A 50 1053 80 HOH HOH . G 3 HOH A 51 1054 81 HOH HOH . G 3 HOH A 52 1055 84 HOH HOH . G 3 HOH A 53 1056 85 HOH HOH . G 3 HOH A 54 1057 86 HOH HOH . G 3 HOH A 55 1058 87 HOH HOH . G 3 HOH A 56 1059 90 HOH HOH . G 3 HOH A 57 1060 91 HOH HOH . G 3 HOH A 58 1061 92 HOH HOH . G 3 HOH A 59 1062 93 HOH HOH . G 3 HOH A 60 1063 94 HOH HOH . G 3 HOH A 61 1064 97 HOH HOH . G 3 HOH A 62 1065 99 HOH HOH . G 3 HOH A 63 1066 100 HOH HOH . G 3 HOH A 64 1067 102 HOH HOH . G 3 HOH A 65 1068 103 HOH HOH . G 3 HOH A 66 1069 104 HOH HOH . G 3 HOH A 67 1070 105 HOH HOH . G 3 HOH A 68 1071 106 HOH HOH . G 3 HOH A 69 1072 108 HOH HOH . G 3 HOH A 70 1073 109 HOH HOH . G 3 HOH A 71 1074 110 HOH HOH . G 3 HOH A 72 1075 111 HOH HOH . G 3 HOH A 73 1076 113 HOH HOH . G 3 HOH A 74 1077 114 HOH HOH . G 3 HOH A 75 1078 115 HOH HOH . G 3 HOH A 76 1079 117 HOH HOH . G 3 HOH A 77 1080 119 HOH HOH . G 3 HOH A 78 1081 122 HOH HOH . G 3 HOH A 79 1082 123 HOH HOH . G 3 HOH A 80 1083 124 HOH HOH . G 3 HOH A 81 1084 128 HOH HOH . G 3 HOH A 82 1085 130 HOH HOH . G 3 HOH A 83 1086 134 HOH HOH . G 3 HOH A 84 1087 142 HOH HOH . G 3 HOH A 85 1088 144 HOH HOH . G 3 HOH A 86 1089 145 HOH HOH . H 3 HOH B 1 1005 1 HOH HOH . H 3 HOH B 2 1006 2 HOH HOH . H 3 HOH B 3 1007 4 HOH HOH . H 3 HOH B 4 1008 6 HOH HOH . H 3 HOH B 5 1009 10 HOH HOH . H 3 HOH B 6 1010 11 HOH HOH . H 3 HOH B 7 1011 13 HOH HOH . H 3 HOH B 8 1012 16 HOH HOH . H 3 HOH B 9 1013 18 HOH HOH . H 3 HOH B 10 1014 22 HOH HOH . H 3 HOH B 11 1015 25 HOH HOH . H 3 HOH B 12 1016 26 HOH HOH . H 3 HOH B 13 1017 30 HOH HOH . H 3 HOH B 14 1018 31 HOH HOH . H 3 HOH B 15 1019 37 HOH HOH . H 3 HOH B 16 1020 40 HOH HOH . H 3 HOH B 17 1021 44 HOH HOH . H 3 HOH B 18 1022 46 HOH HOH . H 3 HOH B 19 1023 48 HOH HOH . H 3 HOH B 20 1024 50 HOH HOH . H 3 HOH B 21 1025 52 HOH HOH . H 3 HOH B 22 1026 54 HOH HOH . H 3 HOH B 23 1027 58 HOH HOH . H 3 HOH B 24 1028 60 HOH HOH . H 3 HOH B 25 1029 63 HOH HOH . H 3 HOH B 26 1030 64 HOH HOH . H 3 HOH B 27 1031 71 HOH HOH . H 3 HOH B 28 1032 72 HOH HOH . H 3 HOH B 29 1033 75 HOH HOH . H 3 HOH B 30 1034 82 HOH HOH . H 3 HOH B 31 1035 83 HOH HOH . H 3 HOH B 32 1036 88 HOH HOH . H 3 HOH B 33 1037 89 HOH HOH . H 3 HOH B 34 1038 95 HOH HOH . H 3 HOH B 35 1039 96 HOH HOH . H 3 HOH B 36 1040 98 HOH HOH . H 3 HOH B 37 1041 101 HOH HOH . H 3 HOH B 38 1042 107 HOH HOH . H 3 HOH B 39 1043 112 HOH HOH . H 3 HOH B 40 1044 116 HOH HOH . H 3 HOH B 41 1045 118 HOH HOH . H 3 HOH B 42 1046 120 HOH HOH . H 3 HOH B 43 1047 121 HOH HOH . H 3 HOH B 44 1048 125 HOH HOH . H 3 HOH B 45 1049 126 HOH HOH . H 3 HOH B 46 1050 127 HOH HOH . H 3 HOH B 47 1051 129 HOH HOH . H 3 HOH B 48 1052 131 HOH HOH . H 3 HOH B 49 1053 132 HOH HOH . H 3 HOH B 50 1054 133 HOH HOH . H 3 HOH B 51 1055 135 HOH HOH . H 3 HOH B 52 1056 136 HOH HOH . H 3 HOH B 53 1057 137 HOH HOH . H 3 HOH B 54 1058 138 HOH HOH . H 3 HOH B 55 1059 139 HOH HOH . H 3 HOH B 56 1060 140 HOH HOH . H 3 HOH B 57 1061 143 HOH HOH . H 3 HOH B 58 1062 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.565 _atom_site.Cartn_y 41.553 _atom_site.Cartn_z 3.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #