data_1SZE # _model_server_result.job_id Os0AOq2xjqoLzXsxI7uSyA _model_server_result.datetime_utc '2024-11-06 01:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5570}' # _entry.id 1SZE # _exptl.entry_id 1SZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SZE _cell.length_a 163.027 _cell.length_b 163.027 _cell.length_c 112.473 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SZE _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 100 n n N1 C10 FMN doub 101 n n C2 O2 FMN doub 102 n n C2 N3 FMN sing 103 n n N3 C4 FMN sing 104 n n N3 HN3 FMN sing 105 n n C4 O4 FMN doub 106 n n C4 C4A FMN sing 107 n n C4A N5 FMN doub 108 n n C4A C10 FMN sing 109 n n N5 C5A FMN sing 110 n n C5A C6 FMN doub 111 n y C5A C9A FMN sing 112 n y C6 C7 FMN sing 113 n y C6 H6 FMN sing 114 n n C7 C7M FMN sing 115 n n C7 C8 FMN doub 116 n y C7M HM71 FMN sing 117 n n C7M HM72 FMN sing 118 n n C7M HM73 FMN sing 119 n n C8 C8M FMN sing 120 n n C8 C9 FMN sing 121 n y C8M HM81 FMN sing 122 n n C8M HM82 FMN sing 123 n n C8M HM83 FMN sing 124 n n C9 C9A FMN doub 125 n y C9 H9 FMN sing 126 n n C9A N10 FMN sing 127 n n N10 C10 FMN sing 128 n n N10 C1' FMN sing 129 n n C1' C2' FMN sing 130 n n C1' "H1'1" FMN sing 131 n n C1' "H1'2" FMN sing 132 n n C2' O2' FMN sing 133 n n C2' C3' FMN sing 134 n n C2' H2' FMN sing 135 n n O2' HO2' FMN sing 136 n n C3' O3' FMN sing 137 n n C3' C4' FMN sing 138 n n C3' H3' FMN sing 139 n n O3' HO3' FMN sing 140 n n C4' O4' FMN sing 141 n n C4' C5' FMN sing 142 n n C4' H4' FMN sing 143 n n O4' HO4' FMN sing 144 n n C5' O5' FMN sing 145 n n C5' "H5'1" FMN sing 146 n n C5' "H5'2" FMN sing 147 n n O5' P FMN sing 148 n n P O1P FMN doub 149 n n P O2P FMN sing 150 n n P O3P FMN sing 151 n n O2P HOP2 FMN sing 152 n n O3P HOP3 FMN sing 153 n n # _atom_sites.entry_id 1SZE _atom_sites.fract_transf_matrix[1][1] 0.006134 _atom_sites.fract_transf_matrix[1][2] 0.003541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 5570 5570 FMN FMN . D 3 173 A 1 5580 5580 173 173 . E 2 FMN B 1 9570 9570 FMN FMN . F 3 173 B 1 9580 9580 173 173 . G 4 HOH A 1 5581 4 HOH HOH . G 4 HOH A 2 5582 7 HOH HOH . G 4 HOH A 3 5583 8 HOH HOH . G 4 HOH A 4 5584 9 HOH HOH . G 4 HOH A 5 5585 11 HOH HOH . G 4 HOH A 6 5586 12 HOH HOH . G 4 HOH A 7 5587 14 HOH HOH . G 4 HOH A 8 5588 15 HOH HOH . G 4 HOH A 9 5589 17 HOH HOH . G 4 HOH A 10 5590 21 HOH HOH . G 4 HOH A 11 5591 23 HOH HOH . G 4 HOH A 12 5592 27 HOH HOH . G 4 HOH A 13 5593 31 HOH HOH . G 4 HOH A 14 5594 33 HOH HOH . G 4 HOH A 15 5595 36 HOH HOH . G 4 HOH A 16 5596 38 HOH HOH . G 4 HOH A 17 5597 41 HOH HOH . G 4 HOH A 18 5598 50 HOH HOH . G 4 HOH A 19 5599 51 HOH HOH . G 4 HOH A 20 5600 53 HOH HOH . G 4 HOH A 21 5601 54 HOH HOH . G 4 HOH A 22 5602 55 HOH HOH . G 4 HOH A 23 5603 56 HOH HOH . G 4 HOH A 24 5604 61 HOH HOH . G 4 HOH A 25 5605 62 HOH HOH . G 4 HOH A 26 5606 77 HOH HOH . G 4 HOH A 27 5607 80 HOH HOH . G 4 HOH A 28 5608 83 HOH HOH . G 4 HOH A 29 5609 84 HOH HOH . G 4 HOH A 30 5610 92 HOH HOH . G 4 HOH A 31 5611 94 HOH HOH . G 4 HOH A 32 5612 95 HOH HOH . G 4 HOH A 33 5613 100 HOH HOH . G 4 HOH A 34 5614 101 HOH HOH . G 4 HOH A 35 5615 103 HOH HOH . G 4 HOH A 36 5616 105 HOH HOH . G 4 HOH A 37 5617 106 HOH HOH . G 4 HOH A 38 5618 107 HOH HOH . G 4 HOH A 39 5619 110 HOH HOH . G 4 HOH A 40 5620 118 HOH HOH . G 4 HOH A 41 5621 125 HOH HOH . G 4 HOH A 42 5622 132 HOH HOH . G 4 HOH A 43 5623 134 HOH HOH . G 4 HOH A 44 5624 140 HOH HOH . G 4 HOH A 45 5625 142 HOH HOH . G 4 HOH A 46 5626 146 HOH HOH . G 4 HOH A 47 5627 147 HOH HOH . G 4 HOH A 48 5628 151 HOH HOH . G 4 HOH A 49 5629 153 HOH HOH . G 4 HOH A 50 5630 154 HOH HOH . G 4 HOH A 51 5631 166 HOH HOH . G 4 HOH A 52 5632 177 HOH HOH . G 4 HOH A 53 5633 180 HOH HOH . G 4 HOH A 54 5634 192 HOH HOH . G 4 HOH A 55 5635 198 HOH HOH . G 4 HOH A 56 5636 199 HOH HOH . G 4 HOH A 57 5637 206 HOH HOH . G 4 HOH A 58 5638 224 HOH HOH . G 4 HOH A 59 5639 225 HOH HOH . G 4 HOH A 60 5640 227 HOH HOH . G 4 HOH A 61 5641 232 HOH HOH . G 4 HOH A 62 5642 238 HOH HOH . G 4 HOH A 63 5643 245 HOH HOH . G 4 HOH A 64 5644 251 HOH HOH . G 4 HOH A 65 5645 253 HOH HOH . G 4 HOH A 66 5646 257 HOH HOH . G 4 HOH A 67 5647 258 HOH HOH . G 4 HOH A 68 5648 261 HOH HOH . G 4 HOH A 69 5649 287 HOH HOH . H 4 HOH B 1 9581 5 HOH HOH . H 4 HOH B 2 9582 6 HOH HOH . H 4 HOH B 3 9583 10 HOH HOH . H 4 HOH B 4 9584 13 HOH HOH . H 4 HOH B 5 9585 16 HOH HOH . H 4 HOH B 6 9586 19 HOH HOH . H 4 HOH B 7 9587 22 HOH HOH . H 4 HOH B 8 9588 26 HOH HOH . H 4 HOH B 9 9589 29 HOH HOH . H 4 HOH B 10 9590 30 HOH HOH . H 4 HOH B 11 9591 37 HOH HOH . H 4 HOH B 12 9592 39 HOH HOH . H 4 HOH B 13 9593 44 HOH HOH . H 4 HOH B 14 9594 48 HOH HOH . H 4 HOH B 15 9595 49 HOH HOH . H 4 HOH B 16 9596 52 HOH HOH . H 4 HOH B 17 9597 57 HOH HOH . H 4 HOH B 18 9598 58 HOH HOH . H 4 HOH B 19 9599 65 HOH HOH . H 4 HOH B 20 9600 67 HOH HOH . H 4 HOH B 21 9601 68 HOH HOH . H 4 HOH B 22 9602 69 HOH HOH . H 4 HOH B 23 9603 70 HOH HOH . H 4 HOH B 24 9604 71 HOH HOH . H 4 HOH B 25 9605 72 HOH HOH . H 4 HOH B 26 9606 74 HOH HOH . H 4 HOH B 27 9607 78 HOH HOH . H 4 HOH B 28 9608 79 HOH HOH . H 4 HOH B 29 9609 82 HOH HOH . H 4 HOH B 30 9610 89 HOH HOH . H 4 HOH B 31 9611 91 HOH HOH . H 4 HOH B 32 9612 93 HOH HOH . H 4 HOH B 33 9613 98 HOH HOH . H 4 HOH B 34 9614 102 HOH HOH . H 4 HOH B 35 9615 104 HOH HOH . H 4 HOH B 36 9616 109 HOH HOH . H 4 HOH B 37 9617 113 HOH HOH . H 4 HOH B 38 9618 138 HOH HOH . H 4 HOH B 39 9619 159 HOH HOH . H 4 HOH B 40 9620 161 HOH HOH . H 4 HOH B 41 9621 187 HOH HOH . H 4 HOH B 42 9622 193 HOH HOH . H 4 HOH B 43 9623 204 HOH HOH . H 4 HOH B 44 9624 211 HOH HOH . H 4 HOH B 45 9625 218 HOH HOH . H 4 HOH B 46 9626 223 HOH HOH . H 4 HOH B 47 9627 230 HOH HOH . H 4 HOH B 48 9628 234 HOH HOH . H 4 HOH B 49 9629 241 HOH HOH . H 4 HOH B 50 9630 250 HOH HOH . H 4 HOH B 51 9631 259 HOH HOH . H 4 HOH B 52 9632 280 HOH HOH . H 4 HOH B 53 9633 290 HOH HOH . H 4 HOH B 54 9634 291 HOH HOH . H 4 HOH B 55 9635 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 67.043 52.88 -1.335 1 32.24 ? N1 FMN 5570 A 1 HETATM 2 C C2 FMN . . . C 2 67.87 51.869 -1.74 1 32.19 ? C2 FMN 5570 A 1 HETATM 3 O O2 FMN . . . C 2 67.615 50.684 -1.759 1 32.67 ? O2 FMN 5570 A 1 HETATM 4 N N3 FMN . . . C 2 69.147 52.26 -2.195 1 31.23 ? N3 FMN 5570 A 1 HETATM 5 C C4 FMN . . . C 2 69.627 53.525 -2.257 1 31.61 ? C4 FMN 5570 A 1 HETATM 6 O O4 FMN . . . C 2 70.751 53.764 -2.666 1 33.51 ? O4 FMN 5570 A 1 HETATM 7 C C4A FMN . . . C 2 68.697 54.564 -1.814 1 29.95 ? C4A FMN 5570 A 1 HETATM 8 N N5 FMN . . . C 2 69.08 55.808 -1.88 1 29.49 ? N5 FMN 5570 A 1 HETATM 9 C C5A FMN . . . C 2 68.247 56.813 -1.504 1 28.65 ? C5A FMN 5570 A 1 HETATM 10 C C6 FMN . . . C 2 68.656 58.144 -1.515 1 28.12 ? C6 FMN 5570 A 1 HETATM 11 C C7 FMN . . . C 2 67.869 59.197 -1.171 1 28.21 ? C7 FMN 5570 A 1 HETATM 12 C C7M FMN . . . C 2 68.437 60.593 -0.996 1 28.49 ? C7M FMN 5570 A 1 HETATM 13 C C8 FMN . . . C 2 66.6 58.862 -0.647 1 27.96 ? C8 FMN 5570 A 1 HETATM 14 C C8M FMN . . . C 2 65.587 59.889 -0.183 1 30.17 ? C8M FMN 5570 A 1 HETATM 15 C C9 FMN . . . C 2 66.148 57.571 -0.602 1 27.21 ? C9 FMN 5570 A 1 HETATM 16 C C9A FMN . . . C 2 66.933 56.495 -1.012 1 28.16 ? C9A FMN 5570 A 1 HETATM 17 N N10 FMN . . . C 2 66.56 55.159 -0.969 1 26.8 ? N10 FMN 5570 A 1 HETATM 18 C C10 FMN . . . C 2 67.403 54.135 -1.368 1 29.84 ? C10 FMN 5570 A 1 HETATM 19 C C1' FMN . . . C 2 65.222 54.784 -0.511 1 23.02 ? C1' FMN 5570 A 1 HETATM 20 C C2' FMN . . . C 2 65.104 54.549 0.941 1 21.62 ? C2' FMN 5570 A 1 HETATM 21 O O2' FMN . . . C 2 65.906 53.49 1.405 1 18.74 ? O2' FMN 5570 A 1 HETATM 22 C C3' FMN . . . C 2 63.722 54.706 1.569 1 22.55 ? C3' FMN 5570 A 1 HETATM 23 O O3' FMN . . . C 2 62.936 53.647 0.96 1 22.28 ? O3' FMN 5570 A 1 HETATM 24 C C4' FMN . . . C 2 63.075 56.072 1.605 1 22.28 ? C4' FMN 5570 A 1 HETATM 25 O O4' FMN . . . C 2 63.979 57.037 2.093 1 21.12 ? O4' FMN 5570 A 1 HETATM 26 C C5' FMN . . . C 2 61.812 55.9 2.419 1 24.19 ? C5' FMN 5570 A 1 HETATM 27 O O5' FMN . . . C 2 61.2 57.155 2.376 1 26.08 ? O5' FMN 5570 A 1 HETATM 28 P P FMN . . . C 2 61.248 58.453 3.287 1 28.68 ? P FMN 5570 A 1 HETATM 29 O O1P FMN . . . C 2 62.498 59.268 2.915 1 24.48 ? O1P FMN 5570 A 1 HETATM 30 O O2P FMN . . . C 2 61.359 57.881 4.698 1 27.26 ? O2P FMN 5570 A 1 HETATM 31 O O3P FMN . . . C 2 59.879 59.095 3.138 1 25.22 ? O3P FMN 5570 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #