data_1SZM
#
_model_server_result.job_id            k0VOzu59r4NfvOfgypU8NQ 
_model_server_result.datetime_utc      '2024-10-12 14:29:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1szm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":351}' 
#
_entry.id    1SZM 
#
_exptl.entry_id    1SZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              438.521 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(1H-INDOL-3-YL)-4-{1-[2-(1-METHYLPYRROLIDIN-2-YL)ETHYL]-1H-INDOL-3-YL}-1H-PYRROLE-2,5-DIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SZM 
_cell.length_a            82.065 
_cell.length_b            89.005 
_cell.length_c            116.388 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C PHE 138 B PHE 138 1_555 B N SEP 139 B SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 B C SEP 139 B SEP 139 1_555 B N GLU 140 B GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C TRP 196 B TRP 196 1_555 B N TPO 197 B TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 B C TPO 197 B TPO 197 1_555 B N LEU 198 B LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C VAL 337 B VAL 337 1_555 B N SEP 338 B SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 B C SEP 338 B SEP 338 1_555 B N ILE 339 B ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C27 H26 N4 O2' 
_chem_comp.formula_weight    438.521 
_chem_comp.id                BI4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(1H-INDOL-3-YL)-4-{1-[2-(1-METHYLPYRROLIDIN-2-YL)ETHYL]-1H-INDOL-3-YL}-1H-PYRROLE-2,5-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O32 C18 BI4 doub 70 n n 
C18 C17 BI4 sing 71 n n 
C18 N19 BI4 sing 72 n n 
C17 C16 BI4 sing 73 n n 
C17 C21 BI4 doub 74 n n 
C16 C15 BI4 sing 75 n y 
C16 C8 BI4 doub 76 n y 
C15 C14 BI4 sing 77 n y 
C15 C10 BI4 doub 78 n y 
C14 C13 BI4 doub 79 n y 
C14 H14 BI4 sing 80 n n 
C13 C12 BI4 sing 81 n y 
C13 H13 BI4 sing 82 n n 
C12 C11 BI4 doub 83 n y 
C12 H12 BI4 sing 84 n n 
C10 C11 BI4 sing 85 n y 
C10 N9 BI4 sing 86 n y 
C11 H11 BI4 sing 87 n n 
N9 C8 BI4 sing 88 n y 
N9 HN9 BI4 sing 89 n n 
C8 H8 BI4 sing 90 n n 
N19 C20 BI4 sing 91 n n 
N19 H19 BI4 sing 92 n n 
C20 O33 BI4 doub 93 n n 
C20 C21 BI4 sing 94 n n 
C21 C22 BI4 sing 95 n n 
C22 C7 BI4 doub 96 n y 
C22 C23 BI4 sing 97 n y 
C7 N6 BI4 sing 98 n y 
C7 H7 BI4 sing 99 n n 
C23 C5 BI4 doub 100 n y 
C23 C1 BI4 sing 101 n y 
C5 C4 BI4 sing 102 n y 
C5 N6 BI4 sing 103 n y 
C4 C3 BI4 doub 104 n y 
C4 H4 BI4 sing 105 n n 
C3 C2 BI4 sing 106 n y 
C3 H3 BI4 sing 107 n n 
C2 C1 BI4 doub 108 n y 
C2 H2 BI4 sing 109 n n 
C1 H1 BI4 sing 110 n n 
N6 C24 BI4 sing 111 n n 
C24 C25 BI4 sing 112 n n 
C24 H241 BI4 sing 113 n n 
C24 H242 BI4 sing 114 n n 
C25 C26 BI4 sing 115 n n 
C25 H251 BI4 sing 116 n n 
C25 H252 BI4 sing 117 n n 
C26 C27 BI4 sing 118 n n 
C26 N30 BI4 sing 119 n n 
C26 H26 BI4 sing 120 n n 
C27 C28 BI4 sing 121 n n 
C27 H271 BI4 sing 122 n n 
C27 H272 BI4 sing 123 n n 
C28 C29 BI4 sing 124 n n 
C28 H281 BI4 sing 125 n n 
C28 H282 BI4 sing 126 n n 
C29 N30 BI4 sing 127 n n 
C29 H291 BI4 sing 128 n n 
C29 H292 BI4 sing 129 n n 
N30 C31 BI4 sing 130 n n 
C31 H311 BI4 sing 131 n n 
C31 H312 BI4 sing 132 n n 
C31 H313 BI4 sing 133 n n 
#
_atom_sites.entry_id                     1SZM 
_atom_sites.fract_transf_matrix[1][1]    0.012185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BI4 A 1 351 1 BI4 BI2 . 
D 2 BI4 B 1 351 2 BI4 BI2 . 
E 3 HOH A 1 352 3 HOH HOH . 
E 3 HOH A 2 353 4 HOH HOH . 
E 3 HOH A 3 354 10 HOH HOH . 
E 3 HOH A 4 355 12 HOH HOH . 
E 3 HOH A 5 356 14 HOH HOH . 
E 3 HOH A 6 357 16 HOH HOH . 
E 3 HOH A 7 358 18 HOH HOH . 
E 3 HOH A 8 359 21 HOH HOH . 
E 3 HOH A 9 360 25 HOH HOH . 
E 3 HOH A 10 361 36 HOH HOH . 
E 3 HOH A 11 362 39 HOH HOH . 
E 3 HOH A 12 363 40 HOH HOH . 
E 3 HOH A 13 364 41 HOH HOH . 
E 3 HOH A 14 365 44 HOH HOH . 
E 3 HOH A 15 366 46 HOH HOH . 
E 3 HOH A 16 367 48 HOH HOH . 
E 3 HOH A 17 368 50 HOH HOH . 
E 3 HOH A 18 369 54 HOH HOH . 
E 3 HOH A 19 370 55 HOH HOH . 
E 3 HOH A 20 371 56 HOH HOH . 
E 3 HOH A 21 372 59 HOH HOH . 
E 3 HOH A 22 373 66 HOH HOH . 
E 3 HOH A 23 374 78 HOH HOH . 
E 3 HOH A 24 375 93 HOH HOH . 
E 3 HOH A 25 376 102 HOH HOH . 
E 3 HOH A 26 377 117 HOH HOH . 
E 3 HOH A 27 378 127 HOH HOH . 
E 3 HOH A 28 379 136 HOH HOH . 
E 3 HOH A 29 380 145 HOH HOH . 
E 3 HOH A 30 381 154 HOH HOH . 
E 3 HOH A 31 382 156 HOH HOH . 
E 3 HOH A 32 383 167 HOH HOH . 
E 3 HOH A 33 384 243 HOH HOH . 
E 3 HOH A 34 385 245 HOH HOH . 
F 3 HOH B 1 352 7 HOH HOH . 
F 3 HOH B 2 353 8 HOH HOH . 
F 3 HOH B 3 354 11 HOH HOH . 
F 3 HOH B 4 355 13 HOH HOH . 
F 3 HOH B 5 356 17 HOH HOH . 
F 3 HOH B 6 357 19 HOH HOH . 
F 3 HOH B 7 358 20 HOH HOH . 
F 3 HOH B 8 359 23 HOH HOH . 
F 3 HOH B 9 360 27 HOH HOH . 
F 3 HOH B 10 361 28 HOH HOH . 
F 3 HOH B 11 362 29 HOH HOH . 
F 3 HOH B 12 363 31 HOH HOH . 
F 3 HOH B 13 364 32 HOH HOH . 
F 3 HOH B 14 365 33 HOH HOH . 
F 3 HOH B 15 366 34 HOH HOH . 
F 3 HOH B 16 367 35 HOH HOH . 
F 3 HOH B 17 368 37 HOH HOH . 
F 3 HOH B 18 369 38 HOH HOH . 
F 3 HOH B 19 370 42 HOH HOH . 
F 3 HOH B 20 371 43 HOH HOH . 
F 3 HOH B 21 372 45 HOH HOH . 
F 3 HOH B 22 373 47 HOH HOH . 
F 3 HOH B 23 374 49 HOH HOH . 
F 3 HOH B 24 375 53 HOH HOH . 
F 3 HOH B 25 376 57 HOH HOH . 
F 3 HOH B 26 377 61 HOH HOH . 
F 3 HOH B 27 378 62 HOH HOH . 
F 3 HOH B 28 379 63 HOH HOH . 
F 3 HOH B 29 380 65 HOH HOH . 
F 3 HOH B 30 381 67 HOH HOH . 
F 3 HOH B 31 382 69 HOH HOH . 
F 3 HOH B 32 383 71 HOH HOH . 
F 3 HOH B 33 384 72 HOH HOH . 
F 3 HOH B 34 385 90 HOH HOH . 
F 3 HOH B 35 386 97 HOH HOH . 
F 3 HOH B 36 387 98 HOH HOH . 
F 3 HOH B 37 388 104 HOH HOH . 
F 3 HOH B 38 389 107 HOH HOH . 
F 3 HOH B 39 390 111 HOH HOH . 
F 3 HOH B 40 391 122 HOH HOH . 
F 3 HOH B 41 392 137 HOH HOH . 
F 3 HOH B 42 393 153 HOH HOH . 
F 3 HOH B 43 394 164 HOH HOH . 
F 3 HOH B 44 395 241 HOH HOH . 
F 3 HOH B 45 396 242 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O32 BI4 . . . C 2 48.344 39.231 43.971 1 40.8 ? O32 BI4 351 A 1 
HETATM 2 C C18 BI4 . . . C 2 49.544 39.269 44.251 1 40.84 ? C18 BI4 351 A 1 
HETATM 3 C C17 BI4 . . . C 2 50.2 38.771 45.456 1 39.87 ? C17 BI4 351 A 1 
HETATM 4 C C16 BI4 . . . C 2 49.449 38.095 46.54 1 43.23 ? C16 BI4 351 A 1 
HETATM 5 C C15 BI4 . . . C 2 49.699 38.021 47.977 1 44.04 ? C15 BI4 351 A 1 
HETATM 6 C C14 BI4 . . . C 2 50.737 38.494 48.832 1 44.22 ? C14 BI4 351 A 1 
HETATM 7 C C13 BI4 . . . C 2 50.692 38.216 50.202 1 43.23 ? C13 BI4 351 A 1 
HETATM 8 C C12 BI4 . . . C 2 49.625 37.477 50.758 1 43.84 ? C12 BI4 351 A 1 
HETATM 9 C C10 BI4 . . . C 2 48.654 37.298 48.573 1 44.4 ? C10 BI4 351 A 1 
HETATM 10 C C11 BI4 . . . C 2 48.585 37.011 49.947 1 44.44 ? C11 BI4 351 A 1 
HETATM 11 N N9 BI4 . . . C 2 47.735 36.93 47.574 1 43.55 ? N9 BI4 351 A 1 
HETATM 12 C C8 BI4 . . . C 2 48.255 37.419 46.345 1 44.47 ? C8 BI4 351 A 1 
HETATM 13 N N19 BI4 . . . C 2 50.497 39.868 43.369 1 38.75 ? N19 BI4 351 A 1 
HETATM 14 C C20 BI4 . . . C 2 51.751 39.723 44.033 1 40.33 ? C20 BI4 351 A 1 
HETATM 15 O O33 BI4 . . . C 2 52.81 40.127 43.537 1 41.2 ? O33 BI4 351 A 1 
HETATM 16 C C21 BI4 . . . C 2 51.548 39.05 45.315 1 39.32 ? C21 BI4 351 A 1 
HETATM 17 C C22 BI4 . . . C 2 52.634 38.668 46.222 1 38.4 ? C22 BI4 351 A 1 
HETATM 18 C C7 BI4 . . . C 2 52.758 37.366 46.651 1 36.91 ? C7 BI4 351 A 1 
HETATM 19 C C23 BI4 . . . C 2 53.815 39.362 46.663 1 37.67 ? C23 BI4 351 A 1 
HETATM 20 C C5 BI4 . . . C 2 54.614 38.448 47.336 1 39.58 ? C5 BI4 351 A 1 
HETATM 21 C C4 BI4 . . . C 2 55.848 38.795 47.902 1 41.24 ? C4 BI4 351 A 1 
HETATM 22 C C3 BI4 . . . C 2 56.276 40.117 47.766 1 39.72 ? C3 BI4 351 A 1 
HETATM 23 C C2 BI4 . . . C 2 55.468 41.062 47.089 1 37.89 ? C2 BI4 351 A 1 
HETATM 24 C C1 BI4 . . . C 2 54.258 40.686 46.549 1 37.28 ? C1 BI4 351 A 1 
HETATM 25 N N6 BI4 . . . C 2 53.972 37.186 47.326 1 39.71 ? N6 BI4 351 A 1 
HETATM 26 C C24 BI4 . . . C 2 54.435 35.936 47.935 1 42.7 ? C24 BI4 351 A 1 
HETATM 27 C C25 BI4 . . . C 2 53.84 35.922 49.36 1 44.68 ? C25 BI4 351 A 1 
HETATM 28 C C26 BI4 . . . C 2 53.137 34.606 49.749 1 46.32 ? C26 BI4 351 A 1 
HETATM 29 C C27 BI4 . . . C 2 51.968 34.228 48.818 1 47.61 ? C27 BI4 351 A 1 
HETATM 30 C C28 BI4 . . . C 2 50.712 34.178 49.696 1 47.84 ? C28 BI4 351 A 1 
HETATM 31 C C29 BI4 . . . C 2 51.206 34.039 51.144 1 46.98 ? C29 BI4 351 A 1 
HETATM 32 N N30 BI4 . . . C 2 52.613 34.54 51.143 1 47.97 ? N30 BI4 351 A 1 
HETATM 33 C C31 BI4 . . . C 2 52.876 35.719 52.004 1 46.5 ? C31 BI4 351 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#