data_1T09 # _model_server_result.job_id '_l2NjB-OPH1LWNb-_ssYiA' _model_server_result.datetime_utc '2024-10-10 09:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 1T09 # _exptl.entry_id 1T09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T09 _cell.length_a 82.71 _cell.length_b 82.71 _cell.length_c 308.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1T09 _atom_sites.fract_transf_matrix[1][1] 0.01209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 415 2 NAP NDP . D 2 NAP B 1 1003 3 NAP NDP . E 3 HOH A 1 416 6 HOH TIP . E 3 HOH A 2 417 7 HOH TIP . E 3 HOH A 3 418 11 HOH TIP . E 3 HOH A 4 419 12 HOH TIP . E 3 HOH A 5 420 14 HOH TIP . E 3 HOH A 6 421 16 HOH TIP . E 3 HOH A 7 422 19 HOH TIP . E 3 HOH A 8 423 21 HOH TIP . E 3 HOH A 9 424 22 HOH TIP . E 3 HOH A 10 425 23 HOH TIP . E 3 HOH A 11 426 27 HOH TIP . E 3 HOH A 12 427 29 HOH TIP . E 3 HOH A 13 428 30 HOH TIP . E 3 HOH A 14 429 31 HOH TIP . E 3 HOH A 15 430 32 HOH TIP . E 3 HOH A 16 431 33 HOH TIP . E 3 HOH A 17 432 35 HOH TIP . E 3 HOH A 18 433 41 HOH TIP . E 3 HOH A 19 434 42 HOH TIP . E 3 HOH A 20 435 43 HOH TIP . E 3 HOH A 21 436 45 HOH TIP . E 3 HOH A 22 437 47 HOH TIP . E 3 HOH A 23 438 48 HOH TIP . E 3 HOH A 24 439 49 HOH TIP . E 3 HOH A 25 440 50 HOH TIP . E 3 HOH A 26 441 52 HOH TIP . E 3 HOH A 27 442 53 HOH TIP . E 3 HOH A 28 443 54 HOH TIP . E 3 HOH A 29 444 55 HOH TIP . E 3 HOH A 30 445 56 HOH TIP . E 3 HOH A 31 446 58 HOH TIP . E 3 HOH A 32 447 62 HOH TIP . E 3 HOH A 33 448 64 HOH TIP . E 3 HOH A 34 449 66 HOH TIP . E 3 HOH A 35 450 68 HOH TIP . E 3 HOH A 36 451 69 HOH TIP . E 3 HOH A 37 452 70 HOH TIP . E 3 HOH A 38 453 74 HOH TIP . E 3 HOH A 39 454 76 HOH TIP . E 3 HOH A 40 455 77 HOH TIP . E 3 HOH A 41 456 81 HOH TIP . E 3 HOH A 42 457 83 HOH TIP . E 3 HOH A 43 458 84 HOH TIP . E 3 HOH A 44 459 87 HOH TIP . E 3 HOH A 45 460 90 HOH TIP . E 3 HOH A 46 461 92 HOH TIP . E 3 HOH A 47 462 94 HOH TIP . E 3 HOH A 48 463 98 HOH TIP . E 3 HOH A 49 464 99 HOH TIP . E 3 HOH A 50 465 101 HOH TIP . E 3 HOH A 51 466 102 HOH TIP . E 3 HOH A 52 467 104 HOH TIP . E 3 HOH A 53 468 105 HOH TIP . E 3 HOH A 54 469 109 HOH TIP . E 3 HOH A 55 470 111 HOH TIP . E 3 HOH A 56 471 112 HOH TIP . E 3 HOH A 57 472 113 HOH TIP . E 3 HOH A 58 473 116 HOH TIP . E 3 HOH A 59 474 117 HOH TIP . E 3 HOH A 60 475 118 HOH TIP . E 3 HOH A 61 476 119 HOH TIP . E 3 HOH A 62 477 120 HOH TIP . E 3 HOH A 63 478 121 HOH TIP . E 3 HOH A 64 479 122 HOH TIP . E 3 HOH A 65 480 129 HOH TIP . E 3 HOH A 66 481 131 HOH TIP . E 3 HOH A 67 482 132 HOH TIP . E 3 HOH A 68 483 134 HOH TIP . E 3 HOH A 69 484 135 HOH TIP . E 3 HOH A 70 485 136 HOH TIP . E 3 HOH A 71 486 138 HOH TIP . E 3 HOH A 72 487 139 HOH TIP . E 3 HOH A 73 488 141 HOH TIP . E 3 HOH A 74 489 144 HOH TIP . E 3 HOH A 75 490 146 HOH TIP . E 3 HOH A 76 491 148 HOH TIP . E 3 HOH A 77 492 153 HOH TIP . E 3 HOH A 78 493 157 HOH TIP . E 3 HOH A 79 494 159 HOH TIP . E 3 HOH A 80 495 164 HOH TIP . E 3 HOH A 81 496 170 HOH TIP . E 3 HOH A 82 497 176 HOH TIP . E 3 HOH A 83 498 180 HOH TIP . E 3 HOH A 84 499 183 HOH TIP . E 3 HOH A 85 500 184 HOH TIP . E 3 HOH A 86 501 188 HOH TIP . E 3 HOH A 87 502 189 HOH TIP . E 3 HOH A 88 503 190 HOH TIP . F 3 HOH B 1 1004 3 HOH TIP . F 3 HOH B 2 1005 4 HOH TIP . F 3 HOH B 3 1006 8 HOH TIP . F 3 HOH B 4 1007 10 HOH TIP . F 3 HOH B 5 1008 13 HOH TIP . F 3 HOH B 6 1009 15 HOH TIP . F 3 HOH B 7 1010 17 HOH TIP . F 3 HOH B 8 1011 18 HOH TIP . F 3 HOH B 9 1012 20 HOH TIP . F 3 HOH B 10 1013 24 HOH TIP . F 3 HOH B 11 1014 25 HOH TIP . F 3 HOH B 12 1015 26 HOH TIP . F 3 HOH B 13 1016 28 HOH TIP . F 3 HOH B 14 1017 34 HOH TIP . F 3 HOH B 15 1018 36 HOH TIP . F 3 HOH B 16 1019 37 HOH TIP . F 3 HOH B 17 1020 38 HOH TIP . F 3 HOH B 18 1021 39 HOH TIP . F 3 HOH B 19 1022 40 HOH TIP . F 3 HOH B 20 1023 44 HOH TIP . F 3 HOH B 21 1024 51 HOH TIP . F 3 HOH B 22 1025 57 HOH TIP . F 3 HOH B 23 1026 59 HOH TIP . F 3 HOH B 24 1027 60 HOH TIP . F 3 HOH B 25 1028 63 HOH TIP . F 3 HOH B 26 1029 65 HOH TIP . F 3 HOH B 27 1030 67 HOH TIP . F 3 HOH B 28 1031 71 HOH TIP . F 3 HOH B 29 1032 72 HOH TIP . F 3 HOH B 30 1033 75 HOH TIP . F 3 HOH B 31 1034 78 HOH TIP . F 3 HOH B 32 1035 79 HOH TIP . F 3 HOH B 33 1036 80 HOH TIP . F 3 HOH B 34 1037 85 HOH TIP . F 3 HOH B 35 1038 86 HOH TIP . F 3 HOH B 36 1039 88 HOH TIP . F 3 HOH B 37 1040 89 HOH TIP . F 3 HOH B 38 1041 91 HOH TIP . F 3 HOH B 39 1042 96 HOH TIP . F 3 HOH B 40 1043 97 HOH TIP . F 3 HOH B 41 1044 100 HOH TIP . F 3 HOH B 42 1045 103 HOH TIP . F 3 HOH B 43 1046 106 HOH TIP . F 3 HOH B 44 1047 107 HOH TIP . F 3 HOH B 45 1048 108 HOH TIP . F 3 HOH B 46 1049 110 HOH TIP . F 3 HOH B 47 1050 114 HOH TIP . F 3 HOH B 48 1051 115 HOH TIP . F 3 HOH B 49 1052 125 HOH TIP . F 3 HOH B 50 1053 126 HOH TIP . F 3 HOH B 51 1054 127 HOH TIP . F 3 HOH B 52 1055 140 HOH TIP . F 3 HOH B 53 1056 145 HOH TIP . F 3 HOH B 54 1057 152 HOH TIP . F 3 HOH B 55 1058 155 HOH TIP . F 3 HOH B 56 1059 160 HOH TIP . F 3 HOH B 57 1060 163 HOH TIP . F 3 HOH B 58 1061 165 HOH TIP . F 3 HOH B 59 1062 166 HOH TIP . F 3 HOH B 60 1063 169 HOH TIP . F 3 HOH B 61 1064 171 HOH TIP . F 3 HOH B 62 1065 172 HOH TIP . F 3 HOH B 63 1066 173 HOH TIP . F 3 HOH B 64 1067 175 HOH TIP . F 3 HOH B 65 1068 185 HOH TIP . F 3 HOH B 66 1069 193 HOH TIP . F 3 HOH B 67 1070 194 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 60.364 -3.77 15.816 1 29.06 ? PA NAP 1003 B 1 HETATM 2 O O1A NAP . . . D 2 59.333 -2.837 15.3 1 28.66 ? O1A NAP 1003 B 1 HETATM 3 O O2A NAP . . . D 2 60.775 -3.568 17.19 1 29.38 ? O2A NAP 1003 B 1 HETATM 4 O O5B NAP . . . D 2 61.59 -3.652 14.759 1 30.95 ? O5B NAP 1003 B 1 HETATM 5 C C5B NAP . . . D 2 61.673 -4.609 13.664 1 29.81 ? C5B NAP 1003 B 1 HETATM 6 C C4B NAP . . . D 2 63.118 -4.343 13.145 1 29.2 ? C4B NAP 1003 B 1 HETATM 7 O O4B NAP . . . D 2 63.386 -2.929 13.203 1 29.5 ? O4B NAP 1003 B 1 HETATM 8 C C3B NAP . . . D 2 64.185 -4.993 14.05 1 29.37 ? C3B NAP 1003 B 1 HETATM 9 O O3B NAP . . . D 2 64.248 -6.386 13.679 1 28.69 ? O3B NAP 1003 B 1 HETATM 10 C C2B NAP . . . D 2 65.391 -4.045 13.632 1 28.05 ? C2B NAP 1003 B 1 HETATM 11 O O2B NAP . . . D 2 65.939 -4.323 12.318 1 27.55 ? O2B NAP 1003 B 1 HETATM 12 C C1B NAP . . . D 2 64.744 -2.69 13.528 1 26.75 ? C1B NAP 1003 B 1 HETATM 13 N N9A NAP . . . D 2 64.759 -1.926 14.774 1 24.32 ? N9A NAP 1003 B 1 HETATM 14 C C8A NAP . . . D 2 63.644 -1.525 15.485 1 24.08 ? C8A NAP 1003 B 1 HETATM 15 N N7A NAP . . . D 2 63.936 -0.842 16.582 1 23.53 ? N7A NAP 1003 B 1 HETATM 16 C C5A NAP . . . D 2 65.31 -0.821 16.536 1 22.93 ? C5A NAP 1003 B 1 HETATM 17 C C6A NAP . . . D 2 66.216 -0.223 17.456 1 23.22 ? C6A NAP 1003 B 1 HETATM 18 N N6A NAP . . . D 2 65.719 0.407 18.511 1 20.97 ? N6A NAP 1003 B 1 HETATM 19 N N1A NAP . . . D 2 67.54 -0.354 17.159 1 23.79 ? N1A NAP 1003 B 1 HETATM 20 C C2A NAP . . . D 2 67.945 -1.037 16.023 1 23.3 ? C2A NAP 1003 B 1 HETATM 21 N N3A NAP . . . D 2 67.177 -1.63 15.11 1 22.62 ? N3A NAP 1003 B 1 HETATM 22 C C4A NAP . . . D 2 65.842 -1.464 15.461 1 22.42 ? C4A NAP 1003 B 1 HETATM 23 O O3 NAP . . . D 2 59.927 -5.185 15.721 1 33.13 ? O3 NAP 1003 B 1 HETATM 24 P PN NAP . . . D 2 58.803 -6.171 15.317 1 34.33 ? PN NAP 1003 B 1 HETATM 25 O O1N NAP . . . D 2 57.605 -5.541 14.777 1 33.54 ? O1N NAP 1003 B 1 HETATM 26 O O2N NAP . . . D 2 59.265 -7.262 14.447 1 36.39 ? O2N NAP 1003 B 1 HETATM 27 O O5D NAP . . . D 2 58.544 -6.711 16.851 1 34.92 ? O5D NAP 1003 B 1 HETATM 28 C C5D NAP . . . D 2 57.503 -7.641 17.057 1 35.7 ? C5D NAP 1003 B 1 HETATM 29 C C4D NAP . . . D 2 56.966 -7.336 18.45 1 31.78 ? C4D NAP 1003 B 1 HETATM 30 O O4D NAP . . . D 2 57.043 -5.866 18.696 1 28.1 ? O4D NAP 1003 B 1 HETATM 31 C C3D NAP . . . D 2 55.525 -7.723 18.645 1 29.52 ? C3D NAP 1003 B 1 HETATM 32 O O3D NAP . . . D 2 55.351 -8.273 19.972 1 29.95 ? O3D NAP 1003 B 1 HETATM 33 C C2D NAP . . . D 2 54.824 -6.388 18.372 1 28.88 ? C2D NAP 1003 B 1 HETATM 34 O O2D NAP . . . D 2 53.498 -6.409 18.905 1 31.61 ? O2D NAP 1003 B 1 HETATM 35 C C1D NAP . . . D 2 55.748 -5.384 19.024 1 28.67 ? C1D NAP 1003 B 1 HETATM 36 N N1N NAP . . . D 2 55.572 -3.984 18.522 1 29.27 ? N1N NAP 1003 B 1 HETATM 37 C C2N NAP . . . D 2 55.259 -3.072 19.604 1 31.28 ? C2N NAP 1003 B 1 HETATM 38 C C3N NAP . . . D 2 55.074 -1.72 19.252 1 32.25 ? C3N NAP 1003 B 1 HETATM 39 C C7N NAP . . . D 2 54.741 -0.721 20.462 1 32.1 ? C7N NAP 1003 B 1 HETATM 40 O O7N NAP . . . D 2 54.585 0.459 20.191 1 33.9 ? O7N NAP 1003 B 1 HETATM 41 N N7N NAP . . . D 2 54.651 -1.227 21.726 1 29.77 ? N7N NAP 1003 B 1 HETATM 42 C C4N NAP . . . D 2 55.168 -1.183 17.909 1 30.3 ? C4N NAP 1003 B 1 HETATM 43 C C5N NAP . . . D 2 55.489 -2.211 16.903 1 29.49 ? C5N NAP 1003 B 1 HETATM 44 C C6N NAP . . . D 2 55.682 -3.539 17.191 1 30.31 ? C6N NAP 1003 B 1 HETATM 45 P P2B NAP . . . D 2 67.078 -5.553 12.147 1 28.34 ? P2B NAP 1003 B 1 HETATM 46 O O1X NAP . . . D 2 67.321 -5.418 10.662 1 27.35 ? O1X NAP 1003 B 1 HETATM 47 O O2X NAP . . . D 2 68.109 -5.105 13.077 1 28.58 ? O2X NAP 1003 B 1 HETATM 48 O O3X NAP . . . D 2 66.322 -6.746 12.54 1 29.52 ? O3X NAP 1003 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #