data_1T0I # _model_server_result.job_id mmPqWknB2sJP9Pv52kYgjw _model_server_result.datetime_utc '2025-02-15 08:05:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 1T0I # _exptl.entry_id 1T0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T0I _cell.length_a 62.801 _cell.length_b 109.957 _cell.length_c 49.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 62.801 219.914 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 134 A ASP 134 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc2 A OD2 ASP 134 A ASP 134 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 A OD1 ASP 134 A ASP 134 2_675 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc4 A OD2 ASP 134 A ASP 134 2_675 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 A OD2 ASP 134 A ASP 134 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc6 A OE2 GLU 138 A GLU 138 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 A OE2 GLU 138 A GLU 138 2_675 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 A OE2 GLU 138 A GLU 138 2_675 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc9 A OE1 GLU 138 A GLU 138 2_675 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc10 C CA CA . A CA 201 1_555 G O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc11 C CA CA . A CA 201 1_555 G O HOH . A HOH 260 2_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 D CA CA . A CA 202 1_555 G O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc13 D CA CA . A CA 202 1_555 G O HOH . A HOH 219 2_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc14 D CA CA . A CA 202 1_555 G O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1T0I _atom_sites.fract_transf_matrix[1][1] 0.015923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 1 CA CA . D 2 CA A 1 202 2 CA CA . E 3 FMN A 1 200 200 FMN FMN . F 3 FMN B 1 200 200 FMN FMN . G 4 HOH A 1 203 1 HOH HOH . G 4 HOH A 2 204 2 HOH HOH . G 4 HOH A 3 205 4 HOH HOH . G 4 HOH A 4 206 5 HOH HOH . G 4 HOH A 5 207 8 HOH HOH . G 4 HOH A 6 208 12 HOH HOH . G 4 HOH A 7 209 13 HOH HOH . G 4 HOH A 8 210 14 HOH HOH . G 4 HOH A 9 211 15 HOH HOH . G 4 HOH A 10 212 18 HOH HOH . G 4 HOH A 11 213 19 HOH HOH . G 4 HOH A 12 214 21 HOH HOH . G 4 HOH A 13 215 22 HOH HOH . G 4 HOH A 14 216 23 HOH HOH . G 4 HOH A 15 217 27 HOH HOH . G 4 HOH A 16 218 28 HOH HOH . G 4 HOH A 17 219 29 HOH HOH . G 4 HOH A 18 220 31 HOH HOH . G 4 HOH A 19 221 33 HOH HOH . G 4 HOH A 20 222 34 HOH HOH . G 4 HOH A 21 223 35 HOH HOH . G 4 HOH A 22 224 36 HOH HOH . G 4 HOH A 23 225 38 HOH HOH . G 4 HOH A 24 226 39 HOH HOH . G 4 HOH A 25 227 40 HOH HOH . G 4 HOH A 26 228 43 HOH HOH . G 4 HOH A 27 229 44 HOH HOH . G 4 HOH A 28 230 45 HOH HOH . G 4 HOH A 29 231 47 HOH HOH . G 4 HOH A 30 232 48 HOH HOH . G 4 HOH A 31 233 49 HOH HOH . G 4 HOH A 32 234 50 HOH HOH . G 4 HOH A 33 235 51 HOH HOH . G 4 HOH A 34 236 53 HOH HOH . G 4 HOH A 35 237 54 HOH HOH . G 4 HOH A 36 238 55 HOH HOH . G 4 HOH A 37 239 56 HOH HOH . G 4 HOH A 38 240 57 HOH HOH . G 4 HOH A 39 241 60 HOH HOH . G 4 HOH A 40 242 61 HOH HOH . G 4 HOH A 41 243 62 HOH HOH . G 4 HOH A 42 244 64 HOH HOH . G 4 HOH A 43 245 69 HOH HOH . G 4 HOH A 44 246 70 HOH HOH . G 4 HOH A 45 247 71 HOH HOH . G 4 HOH A 46 248 72 HOH HOH . G 4 HOH A 47 249 73 HOH HOH . G 4 HOH A 48 250 74 HOH HOH . G 4 HOH A 49 251 75 HOH HOH . G 4 HOH A 50 252 77 HOH HOH . G 4 HOH A 51 253 78 HOH HOH . G 4 HOH A 52 254 82 HOH HOH . G 4 HOH A 53 255 87 HOH HOH . G 4 HOH A 54 256 88 HOH HOH . G 4 HOH A 55 257 89 HOH HOH . G 4 HOH A 56 258 91 HOH HOH . G 4 HOH A 57 259 93 HOH HOH . G 4 HOH A 58 260 95 HOH HOH . G 4 HOH A 59 261 99 HOH HOH . G 4 HOH A 60 262 103 HOH HOH . G 4 HOH A 61 263 104 HOH HOH . G 4 HOH A 62 264 106 HOH HOH . G 4 HOH A 63 265 107 HOH HOH . G 4 HOH A 64 266 108 HOH HOH . G 4 HOH A 65 267 109 HOH HOH . H 4 HOH B 1 201 3 HOH HOH . H 4 HOH B 2 202 6 HOH HOH . H 4 HOH B 3 203 7 HOH HOH . H 4 HOH B 4 204 9 HOH HOH . H 4 HOH B 5 205 10 HOH HOH . H 4 HOH B 6 206 11 HOH HOH . H 4 HOH B 7 207 16 HOH HOH . H 4 HOH B 8 208 17 HOH HOH . H 4 HOH B 9 209 20 HOH HOH . H 4 HOH B 10 210 24 HOH HOH . H 4 HOH B 11 211 25 HOH HOH . H 4 HOH B 12 212 26 HOH HOH . H 4 HOH B 13 213 30 HOH HOH . H 4 HOH B 14 214 32 HOH HOH . H 4 HOH B 15 215 37 HOH HOH . H 4 HOH B 16 216 41 HOH HOH . H 4 HOH B 17 217 42 HOH HOH . H 4 HOH B 18 218 46 HOH HOH . H 4 HOH B 19 219 52 HOH HOH . H 4 HOH B 20 220 58 HOH HOH . H 4 HOH B 21 221 59 HOH HOH . H 4 HOH B 22 222 63 HOH HOH . H 4 HOH B 23 223 65 HOH HOH . H 4 HOH B 24 224 66 HOH HOH . H 4 HOH B 25 225 67 HOH HOH . H 4 HOH B 26 226 68 HOH HOH . H 4 HOH B 27 227 76 HOH HOH . H 4 HOH B 28 228 79 HOH HOH . H 4 HOH B 29 229 80 HOH HOH . H 4 HOH B 30 230 81 HOH HOH . H 4 HOH B 31 231 83 HOH HOH . H 4 HOH B 32 232 84 HOH HOH . H 4 HOH B 33 233 85 HOH HOH . H 4 HOH B 34 234 90 HOH HOH . H 4 HOH B 35 235 92 HOH HOH . H 4 HOH B 36 236 94 HOH HOH . H 4 HOH B 37 237 96 HOH HOH . H 4 HOH B 38 238 97 HOH HOH . H 4 HOH B 39 239 98 HOH HOH . H 4 HOH B 40 240 100 HOH HOH . H 4 HOH B 41 241 101 HOH HOH . H 4 HOH B 42 242 102 HOH HOH . H 4 HOH B 43 243 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 3 16.415 100.824 19.014 1 28.94 ? N1 FMN 200 B 1 HETATM 2 C C2 FMN . . . F 3 16.833 102.138 19.054 1 35.74 ? C2 FMN 200 B 1 HETATM 3 O O2 FMN . . . F 3 16.024 103.045 18.868 1 37.48 ? O2 FMN 200 B 1 HETATM 4 N N3 FMN . . . F 3 18.156 102.443 19.295 1 31.4 ? N3 FMN 200 B 1 HETATM 5 C C4 FMN . . . F 3 19.072 101.429 19.502 1 28.61 ? C4 FMN 200 B 1 HETATM 6 O O4 FMN . . . F 3 20.258 101.669 19.283 1 26.51 ? O4 FMN 200 B 1 HETATM 7 C C4A FMN . . . F 3 18.65 100.103 19.47 1 25.31 ? C4A FMN 200 B 1 HETATM 8 N N5 FMN . . . F 3 19.55 99.078 19.677 1 23.83 ? N5 FMN 200 B 1 HETATM 9 C C5A FMN . . . F 3 19.135 97.762 19.634 1 22.59 ? C5A FMN 200 B 1 HETATM 10 C C6 FMN . . . F 3 20.052 96.74 19.862 1 23.14 ? C6 FMN 200 B 1 HETATM 11 C C7 FMN . . . F 3 19.65 95.408 19.8 1 22.7 ? C7 FMN 200 B 1 HETATM 12 C C7M FMN . . . F 3 20.709 94.423 19.382 1 24.04 ? C7M FMN 200 B 1 HETATM 13 C C8 FMN . . . F 3 18.307 95.11 19.562 1 25.66 ? C8 FMN 200 B 1 HETATM 14 C C8M FMN . . . F 3 17.875 93.713 19.213 1 25.44 ? C8M FMN 200 B 1 HETATM 15 C C9 FMN . . . F 3 17.395 96.139 19.356 1 26.81 ? C9 FMN 200 B 1 HETATM 16 C C9A FMN . . . F 3 17.802 97.468 19.389 1 25.33 ? C9A FMN 200 B 1 HETATM 17 N N10 FMN . . . F 3 16.891 98.492 19.195 1 29.02 ? N10 FMN 200 B 1 HETATM 18 C C10 FMN . . . F 3 17.32 99.803 19.22 1 26.53 ? C10 FMN 200 B 1 HETATM 19 C C1' FMN . . . F 3 15.462 98.255 19.58 1 29.35 ? C1' FMN 200 B 1 HETATM 20 C C2' FMN . . . F 3 14.693 98.014 18.291 1 30.47 ? C2' FMN 200 B 1 HETATM 21 O O2' FMN . . . F 3 14.177 99.244 17.831 1 30.84 ? O2' FMN 200 B 1 HETATM 22 C C3' FMN . . . F 3 13.551 97.018 18.455 1 32.61 ? C3' FMN 200 B 1 HETATM 23 O O3' FMN . . . F 3 13.952 95.919 19.242 1 32.41 ? O3' FMN 200 B 1 HETATM 24 C C4' FMN . . . F 3 13.097 96.52 17.088 1 33.17 ? C4' FMN 200 B 1 HETATM 25 O O4' FMN . . . F 3 11.923 95.753 17.229 1 33.67 ? O4' FMN 200 B 1 HETATM 26 C C5' FMN . . . F 3 14.178 95.675 16.422 1 32.06 ? C5' FMN 200 B 1 HETATM 27 O O5' FMN . . . F 3 13.835 95.444 15.078 1 27.82 ? O5' FMN 200 B 1 HETATM 28 P P FMN . . . F 3 13.445 93.956 14.619 1 31.96 ? P FMN 200 B 1 HETATM 29 O O1P FMN . . . F 3 12.886 94.013 13.252 1 31.14 ? O1P FMN 200 B 1 HETATM 30 O O2P FMN . . . F 3 14.701 93.067 14.635 1 25.88 ? O2P FMN 200 B 1 HETATM 31 O O3P FMN . . . F 3 12.398 93.401 15.598 1 31.13 ? O3P FMN 200 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #