data_1T0P # _model_server_result.job_id 5e-JZK9n4cWBUJZgSvcZZQ _model_server_result.datetime_utc '2025-02-05 10:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 1T0P # _exptl.entry_id 1T0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T0P _cell.length_a 42.463 _cell.length_b 66.471 _cell.length_c 110.816 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T0P _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 287 1_555 A SG CYS 168 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 67 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 28 B CYS 28 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 23 B ASN 23 1_555 D C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B ND2 ASN 81 B ASN 81 1_555 E C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A OG SER 13 A SER 139 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A OG SER 15 A SER 141 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 A OG1 THR 80 A THR 206 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 C MG MG . A MG 901 1_555 F O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 C MG MG . A MG 901 1_555 F O HOH . A HOH 943 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 C MG MG . A MG 901 1_555 B OE2 GLU 37 B GLU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1T0P _atom_sites.fract_transf_matrix[1][1] 0.02355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 901 901 MG MG . D 4 NAG B 1 301 301 NAG NAG . E 4 NAG B 1 302 302 NAG NAG . F 5 HOH A 1 902 1 HOH HOH . F 5 HOH A 2 903 2 HOH HOH . F 5 HOH A 3 904 3 HOH HOH . F 5 HOH A 4 905 4 HOH HOH . F 5 HOH A 5 906 5 HOH HOH . F 5 HOH A 6 907 6 HOH HOH . F 5 HOH A 7 908 7 HOH HOH . F 5 HOH A 8 909 8 HOH HOH . F 5 HOH A 9 910 9 HOH HOH . F 5 HOH A 10 911 10 HOH HOH . F 5 HOH A 11 912 11 HOH HOH . F 5 HOH A 12 913 12 HOH HOH . F 5 HOH A 13 914 13 HOH HOH . F 5 HOH A 14 915 14 HOH HOH . F 5 HOH A 15 916 15 HOH HOH . F 5 HOH A 16 917 16 HOH HOH . F 5 HOH A 17 918 17 HOH HOH . F 5 HOH A 18 919 18 HOH HOH . F 5 HOH A 19 920 19 HOH HOH . F 5 HOH A 20 921 21 HOH HOH . F 5 HOH A 21 922 22 HOH HOH . F 5 HOH A 22 923 23 HOH HOH . F 5 HOH A 23 924 25 HOH HOH . F 5 HOH A 24 925 27 HOH HOH . F 5 HOH A 25 926 31 HOH HOH . F 5 HOH A 26 927 32 HOH HOH . F 5 HOH A 27 928 33 HOH HOH . F 5 HOH A 28 929 34 HOH HOH . F 5 HOH A 29 930 35 HOH HOH . F 5 HOH A 30 931 36 HOH HOH . F 5 HOH A 31 932 37 HOH HOH . F 5 HOH A 32 933 38 HOH HOH . F 5 HOH A 33 934 39 HOH HOH . F 5 HOH A 34 935 40 HOH HOH . F 5 HOH A 35 936 41 HOH HOH . F 5 HOH A 36 937 44 HOH HOH . F 5 HOH A 37 938 46 HOH HOH . F 5 HOH A 38 939 48 HOH HOH . F 5 HOH A 39 940 50 HOH HOH . F 5 HOH A 40 941 51 HOH HOH . F 5 HOH A 41 942 52 HOH HOH . F 5 HOH A 42 943 53 HOH HOH . F 5 HOH A 43 944 54 HOH HOH . F 5 HOH A 44 945 55 HOH HOH . F 5 HOH A 45 946 56 HOH HOH . F 5 HOH A 46 947 57 HOH HOH . F 5 HOH A 47 948 58 HOH HOH . F 5 HOH A 48 949 59 HOH HOH . F 5 HOH A 49 950 60 HOH HOH . F 5 HOH A 50 951 62 HOH HOH . F 5 HOH A 51 952 63 HOH HOH . F 5 HOH A 52 953 64 HOH HOH . F 5 HOH A 53 954 65 HOH HOH . F 5 HOH A 54 955 66 HOH HOH . F 5 HOH A 55 956 68 HOH HOH . F 5 HOH A 56 957 69 HOH HOH . F 5 HOH A 57 958 70 HOH HOH . F 5 HOH A 58 959 71 HOH HOH . F 5 HOH A 59 960 72 HOH HOH . F 5 HOH A 60 961 74 HOH HOH . F 5 HOH A 61 962 75 HOH HOH . F 5 HOH A 62 963 76 HOH HOH . F 5 HOH A 63 964 77 HOH HOH . F 5 HOH A 64 965 78 HOH HOH . F 5 HOH A 65 966 80 HOH HOH . F 5 HOH A 66 967 81 HOH HOH . F 5 HOH A 67 968 82 HOH HOH . F 5 HOH A 68 969 84 HOH HOH . F 5 HOH A 69 970 85 HOH HOH . F 5 HOH A 70 971 86 HOH HOH . F 5 HOH A 71 972 87 HOH HOH . F 5 HOH A 72 973 88 HOH HOH . F 5 HOH A 73 974 89 HOH HOH . F 5 HOH A 74 975 91 HOH HOH . F 5 HOH A 75 976 94 HOH HOH . F 5 HOH A 76 977 95 HOH HOH . F 5 HOH A 77 978 96 HOH HOH . F 5 HOH A 78 979 97 HOH HOH . F 5 HOH A 79 980 98 HOH HOH . F 5 HOH A 80 981 99 HOH HOH . F 5 HOH A 81 982 100 HOH HOH . F 5 HOH A 82 983 101 HOH HOH . F 5 HOH A 83 984 102 HOH HOH . F 5 HOH A 84 985 104 HOH HOH . F 5 HOH A 85 986 105 HOH HOH . F 5 HOH A 86 987 111 HOH HOH . F 5 HOH A 87 988 112 HOH HOH . F 5 HOH A 88 989 113 HOH HOH . F 5 HOH A 89 990 114 HOH HOH . F 5 HOH A 90 991 117 HOH HOH . F 5 HOH A 91 992 118 HOH HOH . F 5 HOH A 92 993 119 HOH HOH . F 5 HOH A 93 994 121 HOH HOH . F 5 HOH A 94 995 122 HOH HOH . F 5 HOH A 95 996 125 HOH HOH . F 5 HOH A 96 997 127 HOH HOH . F 5 HOH A 97 998 128 HOH HOH . F 5 HOH A 98 999 129 HOH HOH . F 5 HOH A 99 1000 130 HOH HOH . F 5 HOH A 100 1001 131 HOH HOH . F 5 HOH A 101 1002 133 HOH HOH . F 5 HOH A 102 1003 134 HOH HOH . F 5 HOH A 103 1004 135 HOH HOH . F 5 HOH A 104 1005 136 HOH HOH . F 5 HOH A 105 1006 138 HOH HOH . F 5 HOH A 106 1007 139 HOH HOH . F 5 HOH A 107 1008 140 HOH HOH . F 5 HOH A 108 1009 141 HOH HOH . F 5 HOH A 109 1010 145 HOH HOH . F 5 HOH A 110 1011 146 HOH HOH . F 5 HOH A 111 1012 147 HOH HOH . F 5 HOH A 112 1013 148 HOH HOH . F 5 HOH A 113 1014 149 HOH HOH . F 5 HOH A 114 1015 150 HOH HOH . F 5 HOH A 115 1016 151 HOH HOH . F 5 HOH A 116 1017 152 HOH HOH . F 5 HOH A 117 1018 153 HOH HOH . F 5 HOH A 118 1019 154 HOH HOH . F 5 HOH A 119 1020 155 HOH HOH . F 5 HOH A 120 1021 156 HOH HOH . F 5 HOH A 121 1022 157 HOH HOH . F 5 HOH A 122 1023 159 HOH HOH . F 5 HOH A 123 1024 161 HOH HOH . F 5 HOH A 124 1025 164 HOH HOH . F 5 HOH A 125 1026 165 HOH HOH . F 5 HOH A 126 1027 168 HOH HOH . F 5 HOH A 127 1028 169 HOH HOH . F 5 HOH A 128 1029 170 HOH HOH . F 5 HOH A 129 1030 171 HOH HOH . F 5 HOH A 130 1031 173 HOH HOH . F 5 HOH A 131 1032 174 HOH HOH . F 5 HOH A 132 1033 175 HOH HOH . F 5 HOH A 133 1034 176 HOH HOH . F 5 HOH A 134 1035 177 HOH HOH . F 5 HOH A 135 1036 179 HOH HOH . G 5 HOH B 1 303 28 HOH HOH . G 5 HOH B 2 304 29 HOH HOH . G 5 HOH B 3 305 30 HOH HOH . G 5 HOH B 4 306 43 HOH HOH . G 5 HOH B 5 307 49 HOH HOH . G 5 HOH B 6 308 61 HOH HOH . G 5 HOH B 7 309 67 HOH HOH . G 5 HOH B 8 310 73 HOH HOH . G 5 HOH B 9 311 83 HOH HOH . G 5 HOH B 10 312 90 HOH HOH . G 5 HOH B 11 313 92 HOH HOH . G 5 HOH B 12 314 93 HOH HOH . G 5 HOH B 13 315 103 HOH HOH . G 5 HOH B 14 316 106 HOH HOH . G 5 HOH B 15 317 107 HOH HOH . G 5 HOH B 16 318 108 HOH HOH . G 5 HOH B 17 319 109 HOH HOH . G 5 HOH B 18 320 115 HOH HOH . G 5 HOH B 19 321 116 HOH HOH . G 5 HOH B 20 322 124 HOH HOH . G 5 HOH B 21 323 126 HOH HOH . G 5 HOH B 22 324 132 HOH HOH . G 5 HOH B 23 325 137 HOH HOH . G 5 HOH B 24 326 142 HOH HOH . G 5 HOH B 25 327 143 HOH HOH . G 5 HOH B 26 328 144 HOH HOH . G 5 HOH B 27 329 158 HOH HOH . G 5 HOH B 28 330 160 HOH HOH . G 5 HOH B 29 331 162 HOH HOH . G 5 HOH B 30 332 163 HOH HOH . G 5 HOH B 31 333 166 HOH HOH . G 5 HOH B 32 334 167 HOH HOH . G 5 HOH B 33 335 172 HOH HOH . G 5 HOH B 34 336 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 28.068 14.917 30.713 1 41.97 ? C1 NAG 302 B 1 HETATM 2 C C2 NAG . . . E 4 28.36 15.281 29.258 1 42.47 ? C2 NAG 302 B 1 HETATM 3 C C3 NAG . . . E 4 29.514 16.278 29.181 1 42.55 ? C3 NAG 302 B 1 HETATM 4 C C4 NAG . . . E 4 29.241 17.474 30.087 1 41.88 ? C4 NAG 302 B 1 HETATM 5 C C5 NAG . . . E 4 28.933 16.989 31.501 1 41.56 ? C5 NAG 302 B 1 HETATM 6 C C6 NAG . . . E 4 28.594 18.116 32.452 1 40.44 ? C6 NAG 302 B 1 HETATM 7 C C7 NAG . . . E 4 28.16 13.855 27.328 1 42.28 ? C7 NAG 302 B 1 HETATM 8 C C8 NAG . . . E 4 26.795 13.184 27.302 1 41.84 ? C8 NAG 302 B 1 HETATM 9 N N2 NAG . . . E 4 28.701 14.08 28.521 1 43.08 ? N2 NAG 302 B 1 HETATM 10 O O3 NAG . . . E 4 29.674 16.723 27.841 1 43.17 ? O3 NAG 302 B 1 HETATM 11 O O4 NAG . . . E 4 30.379 18.325 30.109 1 43.3 ? O4 NAG 302 B 1 HETATM 12 O O5 NAG . . . E 4 27.804 16.096 31.479 1 43.89 ? O5 NAG 302 B 1 HETATM 13 O O6 NAG . . . E 4 29.241 17.941 33.703 1 40.73 ? O6 NAG 302 B 1 HETATM 14 O O7 NAG . . . E 4 28.713 14.169 26.273 1 42.3 ? O7 NAG 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #