data_1T1N # _model_server_result.job_id yiV4APd1tQqfAhTYd7oM_Q _model_server_result.datetime_utc '2024-11-25 01:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":143}' # _entry.id 1T1N # _exptl.entry_id 1T1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.65 _cell.angle_gamma 90 _cell.entry_id 1T1N _cell.length_a 91.17 _cell.length_b 88.06 _cell.length_c 55.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T1N _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A O ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 C FE HEM . A HEM 143 1_555 D C CMO . A CMO 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc3 C FE HEM . A HEM 143 1_555 D O CMO . A CMO 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 136 n n CHA C4D HEM doub 137 n n CHA HHA HEM sing 138 n n CHB C4A HEM sing 139 n n CHB C1B HEM doub 140 n n CHB HHB HEM sing 141 n n CHC C4B HEM sing 142 n n CHC C1C HEM doub 143 n n CHC HHC HEM sing 144 n n CHD C4C HEM doub 145 n n CHD C1D HEM sing 146 n n CHD HHD HEM sing 147 n n C1A C2A HEM doub 148 n y C1A NA HEM sing 149 n y C2A C3A HEM sing 150 n y C2A CAA HEM sing 151 n n C3A C4A HEM doub 152 n y C3A CMA HEM sing 153 n n C4A NA HEM sing 154 n y CMA HMA HEM sing 155 n n CMA HMAA HEM sing 156 n n CMA HMAB HEM sing 157 n n CAA CBA HEM sing 158 n n CAA HAA HEM sing 159 n n CAA HAAA HEM sing 160 n n CBA CGA HEM sing 161 n n CBA HBA HEM sing 162 n n CBA HBAA HEM sing 163 n n CGA O1A HEM doub 164 n n CGA O2A HEM sing 165 n n C1B C2B HEM sing 166 n n C1B NB HEM sing 167 n n C2B C3B HEM doub 168 n n C2B CMB HEM sing 169 n n C3B C4B HEM sing 170 n n C3B CAB HEM sing 171 n n C4B NB HEM doub 172 n n CMB HMB HEM sing 173 n n CMB HMBA HEM sing 174 n n CMB HMBB HEM sing 175 n n CAB CBB HEM doub 176 n n CAB HAB HEM sing 177 n n CBB HBB HEM sing 178 n n CBB HBBA HEM sing 179 n n C1C C2C HEM sing 180 n y C1C NC HEM sing 181 n y C2C C3C HEM doub 182 n y C2C CMC HEM sing 183 n n C3C C4C HEM sing 184 n y C3C CAC HEM sing 185 n n C4C NC HEM sing 186 n y CMC HMC HEM sing 187 n n CMC HMCA HEM sing 188 n n CMC HMCB HEM sing 189 n n CAC CBC HEM doub 190 n n CAC HAC HEM sing 191 n n CBC HBC HEM sing 192 n n CBC HBCA HEM sing 193 n n C1D C2D HEM sing 194 n n C1D ND HEM doub 195 n n C2D C3D HEM doub 196 n n C2D CMD HEM sing 197 n n C3D C4D HEM sing 198 n n C3D CAD HEM sing 199 n n C4D ND HEM sing 200 n n CMD HMD HEM sing 201 n n CMD HMDA HEM sing 202 n n CMD HMDB HEM sing 203 n n CAD CBD HEM sing 204 n n CAD HAD HEM sing 205 n n CAD HADA HEM sing 206 n n CBD CGD HEM sing 207 n n CBD HBD HEM sing 208 n n CBD HBDA HEM sing 209 n n CGD O1D HEM doub 210 n n CGD O2D HEM sing 211 n n O2A H2A HEM sing 212 n n O2D H2D HEM sing 213 n n FE NA HEM sing 214 n n FE NB HEM sing 215 n n FE NC HEM sing 216 n n FE ND HEM sing 217 n n # _atom_sites.entry_id 1T1N _atom_sites.fract_transf_matrix[1][1] 0.010968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 143 143 HEM HEM . D 4 CMO A 1 144 144 CMO HEM . E 3 HEM B 1 147 147 HEM HEM . F 4 CMO B 1 148 148 CMO HEM . G 5 HOH A 1 201 201 HOH HOH . G 5 HOH A 2 202 202 HOH HOH . G 5 HOH A 3 203 203 HOH HOH . G 5 HOH A 4 204 204 HOH HOH . G 5 HOH A 5 206 206 HOH HOH . G 5 HOH A 6 209 209 HOH HOH . G 5 HOH A 7 210 210 HOH HOH . G 5 HOH A 8 211 211 HOH HOH . G 5 HOH A 9 212 212 HOH HOH . G 5 HOH A 10 213 213 HOH HOH . G 5 HOH A 11 215 215 HOH HOH . G 5 HOH A 12 219 219 HOH HOH . G 5 HOH A 13 220 220 HOH HOH . G 5 HOH A 14 227 227 HOH HOH . G 5 HOH A 15 229 229 HOH HOH . G 5 HOH A 16 230 230 HOH HOH . G 5 HOH A 17 231 231 HOH HOH . G 5 HOH A 18 232 232 HOH HOH . G 5 HOH A 19 233 233 HOH HOH . G 5 HOH A 20 234 234 HOH HOH . G 5 HOH A 21 235 235 HOH HOH . G 5 HOH A 22 238 238 HOH HOH . G 5 HOH A 23 239 239 HOH HOH . G 5 HOH A 24 240 240 HOH HOH . G 5 HOH A 25 241 241 HOH HOH . G 5 HOH A 26 242 242 HOH HOH . G 5 HOH A 27 243 243 HOH HOH . G 5 HOH A 28 245 245 HOH HOH . G 5 HOH A 29 249 249 HOH HOH . G 5 HOH A 30 251 251 HOH HOH . H 5 HOH B 1 205 205 HOH HOH . H 5 HOH B 2 207 207 HOH HOH . H 5 HOH B 3 208 208 HOH HOH . H 5 HOH B 4 214 214 HOH HOH . H 5 HOH B 5 216 216 HOH HOH . H 5 HOH B 6 217 217 HOH HOH . H 5 HOH B 7 218 218 HOH HOH . H 5 HOH B 8 221 221 HOH HOH . H 5 HOH B 9 222 222 HOH HOH . H 5 HOH B 10 223 223 HOH HOH . H 5 HOH B 11 224 224 HOH HOH . H 5 HOH B 12 225 225 HOH HOH . H 5 HOH B 13 226 226 HOH HOH . H 5 HOH B 14 228 228 HOH HOH . H 5 HOH B 15 236 236 HOH HOH . H 5 HOH B 16 237 237 HOH HOH . H 5 HOH B 17 244 244 HOH HOH . H 5 HOH B 18 246 246 HOH HOH . H 5 HOH B 19 247 247 HOH HOH . H 5 HOH B 20 248 248 HOH HOH . H 5 HOH B 21 250 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 11.022 -10.72 18.408 1 30.09 ? CHA HEM 143 A 1 HETATM 2 C CHB HEM . . . C 3 12 -12.399 13.95 1 29.26 ? CHB HEM 143 A 1 HETATM 3 C CHC HEM . . . C 3 9.724 -8.574 12.003 1 29.08 ? CHC HEM 143 A 1 HETATM 4 C CHD HEM . . . C 3 9.063 -6.764 16.427 1 29.13 ? CHD HEM 143 A 1 HETATM 5 C C1A HEM . . . C 3 11.49 -11.497 17.36 1 30.24 ? C1A HEM 143 A 1 HETATM 6 C C2A HEM . . . C 3 12.245 -12.726 17.487 1 30.56 ? C2A HEM 143 A 1 HETATM 7 C C3A HEM . . . C 3 12.519 -13.196 16.279 1 30.18 ? C3A HEM 143 A 1 HETATM 8 C C4A HEM . . . C 3 11.941 -12.268 15.322 1 29.91 ? C4A HEM 143 A 1 HETATM 9 C CMA HEM . . . C 3 13.296 -14.471 15.887 1 29.98 ? CMA HEM 143 A 1 HETATM 10 C CAA HEM . . . C 3 12.611 -13.321 18.864 1 31.47 ? CAA HEM 143 A 1 HETATM 11 C CBA HEM . . . C 3 11.439 -14.133 19.449 1 33.16 ? CBA HEM 143 A 1 HETATM 12 C CGA HEM . . . C 3 11.658 -14.495 20.904 1 33.94 ? CGA HEM 143 A 1 HETATM 13 O O1A HEM . . . C 3 10.822 -15.307 21.384 1 34.38 ? O1A HEM 143 A 1 HETATM 14 O O2A HEM . . . C 3 12.662 -13.922 21.443 1 34.92 ? O2A HEM 143 A 1 HETATM 15 C C1B HEM . . . C 3 11.446 -11.502 13.061 1 29.94 ? C1B HEM 143 A 1 HETATM 16 C C2B HEM . . . C 3 11.531 -11.627 11.621 1 29 ? C2B HEM 143 A 1 HETATM 17 C C3B HEM . . . C 3 10.904 -10.58 11.082 1 29 ? C3B HEM 143 A 1 HETATM 18 C C4B HEM . . . C 3 10.414 -9.765 12.171 1 28.96 ? C4B HEM 143 A 1 HETATM 19 C CMB HEM . . . C 3 12.234 -12.808 10.936 1 29.98 ? CMB HEM 143 A 1 HETATM 20 C CAB HEM . . . C 3 10.673 -10.212 9.596 1 29.83 ? CAB HEM 143 A 1 HETATM 21 C CBB HEM . . . C 3 11.682 -10.339 8.728 1 29.92 ? CBB HEM 143 A 1 HETATM 22 C C1C HEM . . . C 3 9.422 -7.703 13.044 1 29.72 ? C1C HEM 143 A 1 HETATM 23 C C2C HEM . . . C 3 8.928 -6.348 12.882 1 29.55 ? C2C HEM 143 A 1 HETATM 24 C C3C HEM . . . C 3 8.747 -5.841 14.096 1 29.34 ? C3C HEM 143 A 1 HETATM 25 C C4C HEM . . . C 3 9.107 -6.875 15.052 1 29.73 ? C4C HEM 143 A 1 HETATM 26 C CMC HEM . . . C 3 8.701 -5.693 11.497 1 29.25 ? CMC HEM 143 A 1 HETATM 27 C CAC HEM . . . C 3 8.246 -4.458 14.535 1 29.25 ? CAC HEM 143 A 1 HETATM 28 C CBC HEM . . . C 3 8.462 -3.328 13.896 1 28.88 ? CBC HEM 143 A 1 HETATM 29 C C1D HEM . . . C 3 9.551 -7.645 17.357 1 29.81 ? C1D HEM 143 A 1 HETATM 30 C C2D HEM . . . C 3 9.602 -7.446 18.785 1 30.02 ? C2D HEM 143 A 1 HETATM 31 C C3D HEM . . . C 3 10.131 -8.538 19.323 1 30.29 ? C3D HEM 143 A 1 HETATM 32 C C4D HEM . . . C 3 10.446 -9.471 18.264 1 30.07 ? C4D HEM 143 A 1 HETATM 33 C CMD HEM . . . C 3 9.084 -6.143 19.461 1 30.04 ? CMD HEM 143 A 1 HETATM 34 C CAD HEM . . . C 3 10.419 -8.832 20.811 1 30.79 ? CAD HEM 143 A 1 HETATM 35 C CBD HEM . . . C 3 11.776 -8.341 21.307 1 32.01 ? CBD HEM 143 A 1 HETATM 36 C CGD HEM . . . C 3 11.812 -8.04 22.782 1 32.64 ? CGD HEM 143 A 1 HETATM 37 O O1D HEM . . . C 3 12.859 -7.505 23.226 1 33.51 ? O1D HEM 143 A 1 HETATM 38 O O2D HEM . . . C 3 10.8 -8.335 23.47 1 33.37 ? O2D HEM 143 A 1 HETATM 39 N NA HEM . . . C 3 11.317 -11.231 16.008 1 29.94 ? NA HEM 143 A 1 HETATM 40 N NB HEM . . . C 3 10.763 -10.344 13.368 1 29 ? NB HEM 143 A 1 HETATM 41 N NC HEM . . . C 3 9.518 -8.013 14.384 1 29.73 ? NC HEM 143 A 1 HETATM 42 N ND HEM . . . C 3 10.075 -8.903 17.052 1 29.9 ? ND HEM 143 A 1 HETATM 43 FE FE HEM . . . C 3 10.418 -9.597 15.21 1 28.97 ? FE HEM 143 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #