data_1T1N # _model_server_result.job_id PRtpXEK7q5deYJoaKCeqFw _model_server_result.datetime_utc '2024-11-28 18:19:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":147}' # _entry.id 1T1N # _exptl.entry_id 1T1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.65 _cell.angle_gamma 90 _cell.entry_id 1T1N _cell.length_a 91.17 _cell.length_b 88.06 _cell.length_c 55.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T1N _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A O ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 C FE HEM . A HEM 143 1_555 D C CMO . A CMO 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc3 C FE HEM . A HEM 143 1_555 D O CMO . A CMO 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 136 n n CHA C4D HEM doub 137 n n CHA HHA HEM sing 138 n n CHB C4A HEM sing 139 n n CHB C1B HEM doub 140 n n CHB HHB HEM sing 141 n n CHC C4B HEM sing 142 n n CHC C1C HEM doub 143 n n CHC HHC HEM sing 144 n n CHD C4C HEM doub 145 n n CHD C1D HEM sing 146 n n CHD HHD HEM sing 147 n n C1A C2A HEM doub 148 n y C1A NA HEM sing 149 n y C2A C3A HEM sing 150 n y C2A CAA HEM sing 151 n n C3A C4A HEM doub 152 n y C3A CMA HEM sing 153 n n C4A NA HEM sing 154 n y CMA HMA HEM sing 155 n n CMA HMAA HEM sing 156 n n CMA HMAB HEM sing 157 n n CAA CBA HEM sing 158 n n CAA HAA HEM sing 159 n n CAA HAAA HEM sing 160 n n CBA CGA HEM sing 161 n n CBA HBA HEM sing 162 n n CBA HBAA HEM sing 163 n n CGA O1A HEM doub 164 n n CGA O2A HEM sing 165 n n C1B C2B HEM sing 166 n n C1B NB HEM sing 167 n n C2B C3B HEM doub 168 n n C2B CMB HEM sing 169 n n C3B C4B HEM sing 170 n n C3B CAB HEM sing 171 n n C4B NB HEM doub 172 n n CMB HMB HEM sing 173 n n CMB HMBA HEM sing 174 n n CMB HMBB HEM sing 175 n n CAB CBB HEM doub 176 n n CAB HAB HEM sing 177 n n CBB HBB HEM sing 178 n n CBB HBBA HEM sing 179 n n C1C C2C HEM sing 180 n y C1C NC HEM sing 181 n y C2C C3C HEM doub 182 n y C2C CMC HEM sing 183 n n C3C C4C HEM sing 184 n y C3C CAC HEM sing 185 n n C4C NC HEM sing 186 n y CMC HMC HEM sing 187 n n CMC HMCA HEM sing 188 n n CMC HMCB HEM sing 189 n n CAC CBC HEM doub 190 n n CAC HAC HEM sing 191 n n CBC HBC HEM sing 192 n n CBC HBCA HEM sing 193 n n C1D C2D HEM sing 194 n n C1D ND HEM doub 195 n n C2D C3D HEM doub 196 n n C2D CMD HEM sing 197 n n C3D C4D HEM sing 198 n n C3D CAD HEM sing 199 n n C4D ND HEM sing 200 n n CMD HMD HEM sing 201 n n CMD HMDA HEM sing 202 n n CMD HMDB HEM sing 203 n n CAD CBD HEM sing 204 n n CAD HAD HEM sing 205 n n CAD HADA HEM sing 206 n n CBD CGD HEM sing 207 n n CBD HBD HEM sing 208 n n CBD HBDA HEM sing 209 n n CGD O1D HEM doub 210 n n CGD O2D HEM sing 211 n n O2A H2A HEM sing 212 n n O2D H2D HEM sing 213 n n FE NA HEM sing 214 n n FE NB HEM sing 215 n n FE NC HEM sing 216 n n FE ND HEM sing 217 n n # _atom_sites.entry_id 1T1N _atom_sites.fract_transf_matrix[1][1] 0.010968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 143 143 HEM HEM . D 4 CMO A 1 144 144 CMO HEM . E 3 HEM B 1 147 147 HEM HEM . F 4 CMO B 1 148 148 CMO HEM . G 5 HOH A 1 201 201 HOH HOH . G 5 HOH A 2 202 202 HOH HOH . G 5 HOH A 3 203 203 HOH HOH . G 5 HOH A 4 204 204 HOH HOH . G 5 HOH A 5 206 206 HOH HOH . G 5 HOH A 6 209 209 HOH HOH . G 5 HOH A 7 210 210 HOH HOH . G 5 HOH A 8 211 211 HOH HOH . G 5 HOH A 9 212 212 HOH HOH . G 5 HOH A 10 213 213 HOH HOH . G 5 HOH A 11 215 215 HOH HOH . G 5 HOH A 12 219 219 HOH HOH . G 5 HOH A 13 220 220 HOH HOH . G 5 HOH A 14 227 227 HOH HOH . G 5 HOH A 15 229 229 HOH HOH . G 5 HOH A 16 230 230 HOH HOH . G 5 HOH A 17 231 231 HOH HOH . G 5 HOH A 18 232 232 HOH HOH . G 5 HOH A 19 233 233 HOH HOH . G 5 HOH A 20 234 234 HOH HOH . G 5 HOH A 21 235 235 HOH HOH . G 5 HOH A 22 238 238 HOH HOH . G 5 HOH A 23 239 239 HOH HOH . G 5 HOH A 24 240 240 HOH HOH . G 5 HOH A 25 241 241 HOH HOH . G 5 HOH A 26 242 242 HOH HOH . G 5 HOH A 27 243 243 HOH HOH . G 5 HOH A 28 245 245 HOH HOH . G 5 HOH A 29 249 249 HOH HOH . G 5 HOH A 30 251 251 HOH HOH . H 5 HOH B 1 205 205 HOH HOH . H 5 HOH B 2 207 207 HOH HOH . H 5 HOH B 3 208 208 HOH HOH . H 5 HOH B 4 214 214 HOH HOH . H 5 HOH B 5 216 216 HOH HOH . H 5 HOH B 6 217 217 HOH HOH . H 5 HOH B 7 218 218 HOH HOH . H 5 HOH B 8 221 221 HOH HOH . H 5 HOH B 9 222 222 HOH HOH . H 5 HOH B 10 223 223 HOH HOH . H 5 HOH B 11 224 224 HOH HOH . H 5 HOH B 12 225 225 HOH HOH . H 5 HOH B 13 226 226 HOH HOH . H 5 HOH B 14 228 228 HOH HOH . H 5 HOH B 15 236 236 HOH HOH . H 5 HOH B 16 237 237 HOH HOH . H 5 HOH B 17 244 244 HOH HOH . H 5 HOH B 18 246 246 HOH HOH . H 5 HOH B 19 247 247 HOH HOH . H 5 HOH B 20 248 248 HOH HOH . H 5 HOH B 21 250 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 8.531 9.428 -18.191 1 41.79 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . E 3 10.093 11.009 -13.915 1 41.02 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . E 3 8.321 7.032 -11.823 1 40.95 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . E 3 6.393 5.654 -16.037 1 41.52 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . E 3 9.207 10.183 -17.254 1 41.67 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . E 3 10.116 11.286 -17.48 1 41.85 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . E 3 10.528 11.702 -16.279 1 41.64 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . E 3 9.896 10.867 -15.272 1 41.51 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . E 3 11.501 12.839 -15.889 1 41.53 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . E 3 10.525 11.876 -18.847 1 42.27 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . E 3 9.456 12.207 -19.851 1 43.43 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . E 3 9.392 13.517 -20.556 1 43.99 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . E 3 8.27 13.841 -21.082 1 44.45 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . E 3 10.439 14.231 -20.598 1 44.39 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . E 3 9.77 10.047 -12.999 1 40.62 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . E 3 10.144 10.093 -11.598 1 40.7 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . E 3 9.65 8.987 -11.013 1 40.49 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . E 3 8.958 8.235 -12.034 1 40.58 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . E 3 10.96 11.26 -10.994 1 40.23 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . E 3 9.775 8.563 -9.54 1 40.42 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . E 3 9.014 7.702 -8.904 1 40.15 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . E 3 7.66 6.292 -12.778 1 41.24 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . E 3 7.023 5.009 -12.559 1 41.16 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . E 3 6.488 4.632 -13.721 1 41.33 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . E 3 6.772 5.664 -14.703 1 41.35 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . E 3 6.99 4.255 -11.214 1 41.08 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . E 3 5.699 3.343 -14.002 1 41.34 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . E 3 5.649 2.762 -15.18 1 41.49 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . E 3 6.759 6.586 -16.987 1 41.85 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . E 3 6.287 6.64 -18.351 1 42.1 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . E 3 6.878 7.678 -18.941 1 42.29 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . E 3 7.745 8.312 -17.977 1 41.9 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . E 3 5.272 5.631 -18.95 1 42.2 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . E 3 6.719 8.182 -20.384 1 42.85 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . E 3 7.829 7.844 -21.385 1 43.8 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . E 3 7.291 8.065 -22.799 1 53.76 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . E 3 6.942 9.263 -23.021 1 54.43 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . E 3 7.235 7.047 -23.529 1 54.22 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . E 3 9.083 9.937 -15.891 1 41.49 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . E 3 9.024 8.901 -13.25 1 40.88 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . E 3 7.501 6.676 -14.103 1 41.34 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . E 3 7.661 7.627 -16.781 1 41.68 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . E 3 8.277 8.308 -15.008 1 41.02 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 632 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #