data_1T1S
#
_model_server_result.job_id            Aalc0TtIM_ICcz41TIfEDA 
_model_server_result.datetime_utc      '2024-12-21 18:30:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1t1s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":3001}' 
#
_entry.id    1T1S 
#
_exptl.entry_id    1T1S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.546 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(5-CHLORO-PYRIDIN-2-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1T1S 
_cell.length_a            182.917 
_cell.length_b            59.246 
_cell.length_c            86.988 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1T1S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 150 A ASP 149 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc2 A OE2 GLU 152 A GLU 151 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc3 A OE2 GLU 231 A GLU 230 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc4 D MG MG . A MG 1002 1_555 E O2 CBQ . A CBQ 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C6 H9 Cl N2 O6 P2' 
_chem_comp.formula_weight    302.546 
_chem_comp.id                CBQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(5-CHLORO-PYRIDIN-2-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '[{(5-CHLORO-2-PYRIDINYL)AMINO} METHYLENE]-1,1-BISPHOSPHONATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 CBQ sing 70 n n 
O1 HO1 CBQ sing 71 n n 
P1 O2 CBQ doub 72 n n 
P1 O3 CBQ sing 73 n n 
P1 C1 CBQ sing 74 n n 
O3 HO3 CBQ sing 75 n n 
C1 N1 CBQ sing 76 n n 
C1 P2 CBQ sing 77 n n 
C1 H1 CBQ sing 78 n n 
N1 C2 CBQ sing 79 n n 
N1 HN1 CBQ sing 80 n n 
C2 N2 CBQ doub 81 n y 
C2 C6 CBQ sing 82 n y 
N2 C3 CBQ sing 83 n y 
C3 C4 CBQ doub 84 n y 
C3 H3 CBQ sing 85 n n 
C4 CL1 CBQ sing 86 n n 
C4 C5 CBQ sing 87 n y 
C5 C6 CBQ doub 88 n y 
C5 H5 CBQ sing 89 n n 
C6 H6 CBQ sing 90 n n 
P2 O4 CBQ doub 91 n n 
P2 O5 CBQ sing 92 n n 
P2 O6 CBQ sing 93 n n 
O5 HO5 CBQ sing 94 n n 
O6 HO6 CBQ sing 95 n n 
#
_atom_sites.entry_id                     1T1S 
_atom_sites.fract_transf_matrix[1][1]    0.005467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1001 1001 SO4 SO4 . 
D 3 MG A 1 1002 161 MG MG . 
E 4 CBQ A 1 2001 2001 CBQ CBQ . 
F 2 SO4 B 1 1002 1002 SO4 SO4 . 
G 4 CBQ B 1 3001 3001 CBQ CBQ . 
H 5 HOH A 1 2002 1 HOH HOH . 
H 5 HOH A 2 2003 3 HOH HOH . 
H 5 HOH A 3 2004 4 HOH HOH . 
H 5 HOH A 4 2005 7 HOH HOH . 
H 5 HOH A 5 2006 10 HOH HOH . 
H 5 HOH A 6 2007 12 HOH HOH . 
H 5 HOH A 7 2008 13 HOH HOH . 
H 5 HOH A 8 2009 16 HOH HOH . 
H 5 HOH A 9 2010 17 HOH HOH . 
H 5 HOH A 10 2011 18 HOH HOH . 
H 5 HOH A 11 2012 19 HOH HOH . 
H 5 HOH A 12 2013 21 HOH HOH . 
H 5 HOH A 13 2014 24 HOH HOH . 
H 5 HOH A 14 2015 29 HOH HOH . 
H 5 HOH A 15 2016 30 HOH HOH . 
H 5 HOH A 16 2017 34 HOH HOH . 
H 5 HOH A 17 2018 35 HOH HOH . 
H 5 HOH A 18 2019 37 HOH HOH . 
H 5 HOH A 19 2020 39 HOH HOH . 
H 5 HOH A 20 2021 41 HOH HOH . 
H 5 HOH A 21 2022 42 HOH HOH . 
H 5 HOH A 22 2023 43 HOH HOH . 
H 5 HOH A 23 2024 44 HOH HOH . 
H 5 HOH A 24 2025 46 HOH HOH . 
H 5 HOH A 25 2026 49 HOH HOH . 
H 5 HOH A 26 2027 50 HOH HOH . 
H 5 HOH A 27 2028 51 HOH HOH . 
H 5 HOH A 28 2029 52 HOH HOH . 
H 5 HOH A 29 2030 55 HOH HOH . 
H 5 HOH A 30 2031 56 HOH HOH . 
H 5 HOH A 31 2032 58 HOH HOH . 
H 5 HOH A 32 2033 59 HOH HOH . 
H 5 HOH A 33 2034 66 HOH HOH . 
H 5 HOH A 34 2035 67 HOH HOH . 
H 5 HOH A 35 2036 68 HOH HOH . 
H 5 HOH A 36 2037 69 HOH HOH . 
H 5 HOH A 37 2038 70 HOH HOH . 
H 5 HOH A 38 2039 74 HOH HOH . 
H 5 HOH A 39 2040 75 HOH HOH . 
H 5 HOH A 40 2041 76 HOH HOH . 
H 5 HOH A 41 2042 77 HOH HOH . 
H 5 HOH A 42 2043 78 HOH HOH . 
H 5 HOH A 43 2044 79 HOH HOH . 
H 5 HOH A 44 2045 81 HOH HOH . 
H 5 HOH A 45 2046 82 HOH HOH . 
H 5 HOH A 46 2047 83 HOH HOH . 
H 5 HOH A 47 2048 85 HOH HOH . 
H 5 HOH A 48 2049 86 HOH HOH . 
H 5 HOH A 49 2050 87 HOH HOH . 
H 5 HOH A 50 2051 88 HOH HOH . 
H 5 HOH A 51 2052 91 HOH HOH . 
H 5 HOH A 52 2053 92 HOH HOH . 
H 5 HOH A 53 2054 93 HOH HOH . 
H 5 HOH A 54 2055 94 HOH HOH . 
H 5 HOH A 55 2056 95 HOH HOH . 
H 5 HOH A 56 2057 96 HOH HOH . 
H 5 HOH A 57 2058 97 HOH HOH . 
H 5 HOH A 58 2059 98 HOH HOH . 
H 5 HOH A 59 2060 99 HOH HOH . 
H 5 HOH A 60 2061 100 HOH HOH . 
H 5 HOH A 61 2062 101 HOH HOH . 
H 5 HOH A 62 2063 104 HOH HOH . 
H 5 HOH A 63 2064 105 HOH HOH . 
H 5 HOH A 64 2065 106 HOH HOH . 
H 5 HOH A 65 2066 107 HOH HOH . 
H 5 HOH A 66 2067 109 HOH HOH . 
H 5 HOH A 67 2068 111 HOH HOH . 
H 5 HOH A 68 2069 113 HOH HOH . 
H 5 HOH A 69 2070 114 HOH HOH . 
H 5 HOH A 70 2071 116 HOH HOH . 
H 5 HOH A 71 2072 117 HOH HOH . 
H 5 HOH A 72 2073 119 HOH HOH . 
H 5 HOH A 73 2074 123 HOH HOH . 
H 5 HOH A 74 2075 125 HOH HOH . 
H 5 HOH A 75 2076 128 HOH HOH . 
H 5 HOH A 76 2077 129 HOH HOH . 
H 5 HOH A 77 2078 133 HOH HOH . 
H 5 HOH A 78 2079 134 HOH HOH . 
H 5 HOH A 79 2080 135 HOH HOH . 
H 5 HOH A 80 2081 137 HOH HOH . 
H 5 HOH A 81 2082 139 HOH HOH . 
H 5 HOH A 82 2083 143 HOH HOH . 
H 5 HOH A 83 2084 144 HOH HOH . 
H 5 HOH A 84 2085 146 HOH HOH . 
H 5 HOH A 85 2086 151 HOH HOH . 
H 5 HOH A 86 2087 157 HOH HOH . 
H 5 HOH A 87 2088 158 HOH HOH . 
H 5 HOH A 88 2089 159 HOH HOH . 
H 5 HOH A 89 2090 160 HOH HOH . 
I 5 HOH B 1 3002 2 HOH HOH . 
I 5 HOH B 2 3003 5 HOH HOH . 
I 5 HOH B 3 3004 6 HOH HOH . 
I 5 HOH B 4 3005 8 HOH HOH . 
I 5 HOH B 5 3006 9 HOH HOH . 
I 5 HOH B 6 3007 11 HOH HOH . 
I 5 HOH B 7 3008 14 HOH HOH . 
I 5 HOH B 8 3009 15 HOH HOH . 
I 5 HOH B 9 3010 20 HOH HOH . 
I 5 HOH B 10 3011 22 HOH HOH . 
I 5 HOH B 11 3012 23 HOH HOH . 
I 5 HOH B 12 3013 25 HOH HOH . 
I 5 HOH B 13 3014 26 HOH HOH . 
I 5 HOH B 14 3015 27 HOH HOH . 
I 5 HOH B 15 3016 28 HOH HOH . 
I 5 HOH B 16 3017 31 HOH HOH . 
I 5 HOH B 17 3018 32 HOH HOH . 
I 5 HOH B 18 3019 33 HOH HOH . 
I 5 HOH B 19 3020 36 HOH HOH . 
I 5 HOH B 20 3021 38 HOH HOH . 
I 5 HOH B 21 3022 40 HOH HOH . 
I 5 HOH B 22 3023 45 HOH HOH . 
I 5 HOH B 23 3024 47 HOH HOH . 
I 5 HOH B 24 3025 48 HOH HOH . 
I 5 HOH B 25 3026 53 HOH HOH . 
I 5 HOH B 26 3027 54 HOH HOH . 
I 5 HOH B 27 3028 57 HOH HOH . 
I 5 HOH B 28 3029 60 HOH HOH . 
I 5 HOH B 29 3030 61 HOH HOH . 
I 5 HOH B 30 3031 62 HOH HOH . 
I 5 HOH B 31 3032 63 HOH HOH . 
I 5 HOH B 32 3033 64 HOH HOH . 
I 5 HOH B 33 3034 65 HOH HOH . 
I 5 HOH B 34 3035 71 HOH HOH . 
I 5 HOH B 35 3036 72 HOH HOH . 
I 5 HOH B 36 3037 73 HOH HOH . 
I 5 HOH B 37 3038 80 HOH HOH . 
I 5 HOH B 38 3039 84 HOH HOH . 
I 5 HOH B 39 3040 89 HOH HOH . 
I 5 HOH B 40 3041 90 HOH HOH . 
I 5 HOH B 41 3042 102 HOH HOH . 
I 5 HOH B 42 3043 103 HOH HOH . 
I 5 HOH B 43 3044 108 HOH HOH . 
I 5 HOH B 44 3045 110 HOH HOH . 
I 5 HOH B 45 3046 112 HOH HOH . 
I 5 HOH B 46 3047 115 HOH HOH . 
I 5 HOH B 47 3048 118 HOH HOH . 
I 5 HOH B 48 3049 120 HOH HOH . 
I 5 HOH B 49 3050 121 HOH HOH . 
I 5 HOH B 50 3051 122 HOH HOH . 
I 5 HOH B 51 3052 124 HOH HOH . 
I 5 HOH B 52 3053 126 HOH HOH . 
I 5 HOH B 53 3054 127 HOH HOH . 
I 5 HOH B 54 3055 130 HOH HOH . 
I 5 HOH B 55 3056 131 HOH HOH . 
I 5 HOH B 56 3057 132 HOH HOH . 
I 5 HOH B 57 3058 136 HOH HOH . 
I 5 HOH B 58 3059 138 HOH HOH . 
I 5 HOH B 59 3060 140 HOH HOH . 
I 5 HOH B 60 3061 141 HOH HOH . 
I 5 HOH B 61 3062 142 HOH HOH . 
I 5 HOH B 62 3063 145 HOH HOH . 
I 5 HOH B 63 3064 147 HOH HOH . 
I 5 HOH B 64 3065 148 HOH HOH . 
I 5 HOH B 65 3066 149 HOH HOH . 
I 5 HOH B 66 3067 150 HOH HOH . 
I 5 HOH B 67 3068 152 HOH HOH . 
I 5 HOH B 68 3069 153 HOH HOH . 
I 5 HOH B 69 3070 154 HOH HOH . 
I 5 HOH B 70 3071 155 HOH HOH . 
I 5 HOH B 71 3072 156 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 CBQ . . . G 4 22.888 16.877 23.515 0.5 38.92 ? O1 CBQ 3001 B 1 
HETATM 2 P P1 CBQ . . . G 4 22.215 16.641 24.888 0.5 38.43 ? P1 CBQ 3001 B 1 
HETATM 3 O O2 CBQ . . . G 4 21.738 15.271 25.004 0.5 38.94 ? O2 CBQ 3001 B 1 
HETATM 4 O O3 CBQ . . . G 4 23.265 16.764 26.023 0.5 36.96 ? O3 CBQ 3001 B 1 
HETATM 5 C C1 CBQ . . . G 4 20.862 17.825 25.121 0.5 39.44 ? C1 CBQ 3001 B 1 
HETATM 6 N N1 CBQ . . . G 4 20.219 17.607 26.405 0.5 39.79 ? N1 CBQ 3001 B 1 
HETATM 7 C C2 CBQ . . . G 4 20.445 18.39 27.509 0.5 39 ? C2 CBQ 3001 B 1 
HETATM 8 N N2 CBQ . . . G 4 19.762 18.084 28.688 0.5 39.53 ? N2 CBQ 3001 B 1 
HETATM 9 C C3 CBQ . . . G 4 19.94 18.842 29.837 0.5 39.53 ? C3 CBQ 3001 B 1 
HETATM 10 C C4 CBQ . . . G 4 20.81 19.912 29.788 0.5 39.35 ? C4 CBQ 3001 B 1 
HETATM 11 CL CL1 CBQ . . . G 4 20.961 20.919 31.176 0.5 36.82 ? CL1 CBQ 3001 B 1 
HETATM 12 C C5 CBQ . . . G 4 21.511 20.238 28.636 0.5 37.79 ? C5 CBQ 3001 B 1 
HETATM 13 C C6 CBQ . . . G 4 21.333 19.479 27.487 0.5 37.69 ? C6 CBQ 3001 B 1 
HETATM 14 P P2 CBQ . . . G 4 19.622 17.67 23.797 0.5 42.69 ? P2 CBQ 3001 B 1 
HETATM 15 O O4 CBQ . . . G 4 20.284 17.885 22.41 0.5 42.66 ? O4 CBQ 3001 B 1 
HETATM 16 O O5 CBQ . . . G 4 18.531 18.617 23.989 0.5 41.18 ? O5 CBQ 3001 B 1 
HETATM 17 O O6 CBQ . . . G 4 18.912 16.3 23.874 0.5 40.99 ? O6 CBQ 3001 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#