data_1T25
#
_model_server_result.job_id            8Gu8MrlEk4lFAKRImnNTEw 
_model_server_result.datetime_utc      '2024-11-08 13:02:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1t25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1T25 
#
_exptl.entry_id    1T25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1T25 
_cell.length_a            81.241 
_cell.length_b            87.185 
_cell.length_c            92.094 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1T25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 81.241 87.185 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.241 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 87.185 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 141 n n 
C1 C2 GOL sing 142 n n 
C1 H11 GOL sing 143 n n 
C1 H12 GOL sing 144 n n 
O1 HO1 GOL sing 145 n n 
C2 O2 GOL sing 146 n n 
C2 C3 GOL sing 147 n n 
C2 H2 GOL sing 148 n n 
O2 HO2 GOL sing 149 n n 
C3 O3 GOL sing 150 n n 
C3 H31 GOL sing 151 n n 
C3 H32 GOL sing 152 n n 
O3 HO3 GOL sing 153 n n 
#
_atom_sites.entry_id                     1T25 
_atom_sites.fract_transf_matrix[1][1]    0.012309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAI A 1 336 316 NAI NAD . 
C 3 GAG A 1 337 1 GAG GAG . 
D 4 GOL A 1 401 1 GOL GOL . 
E 5 HOH A 1 402 1 HOH HOH . 
E 5 HOH A 2 403 2 HOH HOH . 
E 5 HOH A 3 404 3 HOH HOH . 
E 5 HOH A 4 405 4 HOH HOH . 
E 5 HOH A 5 406 5 HOH HOH . 
E 5 HOH A 6 407 6 HOH HOH . 
E 5 HOH A 7 408 7 HOH HOH . 
E 5 HOH A 8 409 8 HOH HOH . 
E 5 HOH A 9 410 9 HOH HOH . 
E 5 HOH A 10 411 10 HOH HOH . 
E 5 HOH A 11 412 11 HOH HOH . 
E 5 HOH A 12 413 12 HOH HOH . 
E 5 HOH A 13 414 13 HOH HOH . 
E 5 HOH A 14 415 14 HOH HOH . 
E 5 HOH A 15 416 15 HOH HOH . 
E 5 HOH A 16 417 16 HOH HOH . 
E 5 HOH A 17 418 17 HOH HOH . 
E 5 HOH A 18 419 18 HOH HOH . 
E 5 HOH A 19 420 19 HOH HOH . 
E 5 HOH A 20 421 20 HOH HOH . 
E 5 HOH A 21 422 21 HOH HOH . 
E 5 HOH A 22 423 22 HOH HOH . 
E 5 HOH A 23 424 23 HOH HOH . 
E 5 HOH A 24 425 24 HOH HOH . 
E 5 HOH A 25 426 25 HOH HOH . 
E 5 HOH A 26 427 26 HOH HOH . 
E 5 HOH A 27 428 27 HOH HOH . 
E 5 HOH A 28 429 28 HOH HOH . 
E 5 HOH A 29 430 29 HOH HOH . 
E 5 HOH A 30 431 30 HOH HOH . 
E 5 HOH A 31 432 31 HOH HOH . 
E 5 HOH A 32 433 32 HOH HOH . 
E 5 HOH A 33 434 33 HOH HOH . 
E 5 HOH A 34 435 34 HOH HOH . 
E 5 HOH A 35 436 35 HOH HOH . 
E 5 HOH A 36 437 36 HOH HOH . 
E 5 HOH A 37 438 37 HOH HOH . 
E 5 HOH A 38 439 38 HOH HOH . 
E 5 HOH A 39 440 39 HOH HOH . 
E 5 HOH A 40 441 40 HOH HOH . 
E 5 HOH A 41 442 41 HOH HOH . 
E 5 HOH A 42 443 42 HOH HOH . 
E 5 HOH A 43 444 43 HOH HOH . 
E 5 HOH A 44 445 44 HOH HOH . 
E 5 HOH A 45 446 45 HOH HOH . 
E 5 HOH A 46 447 47 HOH HOH . 
E 5 HOH A 47 448 48 HOH HOH . 
E 5 HOH A 48 449 49 HOH HOH . 
E 5 HOH A 49 450 50 HOH HOH . 
E 5 HOH A 50 451 51 HOH HOH . 
E 5 HOH A 51 452 52 HOH HOH . 
E 5 HOH A 52 453 53 HOH HOH . 
E 5 HOH A 53 454 54 HOH HOH . 
E 5 HOH A 54 455 55 HOH HOH . 
E 5 HOH A 55 456 56 HOH HOH . 
E 5 HOH A 56 457 57 HOH HOH . 
E 5 HOH A 57 458 58 HOH HOH . 
E 5 HOH A 58 459 59 HOH HOH . 
E 5 HOH A 59 460 60 HOH HOH . 
E 5 HOH A 60 461 61 HOH HOH . 
E 5 HOH A 61 462 62 HOH HOH . 
E 5 HOH A 62 463 63 HOH HOH . 
E 5 HOH A 63 464 64 HOH HOH . 
E 5 HOH A 64 465 65 HOH HOH . 
E 5 HOH A 65 466 66 HOH HOH . 
E 5 HOH A 66 467 67 HOH HOH . 
E 5 HOH A 67 468 68 HOH HOH . 
E 5 HOH A 68 469 69 HOH HOH . 
E 5 HOH A 69 470 70 HOH HOH . 
E 5 HOH A 70 471 71 HOH HOH . 
E 5 HOH A 71 472 72 HOH HOH . 
E 5 HOH A 72 473 73 HOH HOH . 
E 5 HOH A 73 474 74 HOH HOH . 
E 5 HOH A 74 475 75 HOH HOH . 
E 5 HOH A 75 476 76 HOH HOH . 
E 5 HOH A 76 477 77 HOH HOH . 
E 5 HOH A 77 478 78 HOH HOH . 
E 5 HOH A 78 479 79 HOH HOH . 
E 5 HOH A 79 480 80 HOH HOH . 
E 5 HOH A 80 481 81 HOH HOH . 
E 5 HOH A 81 482 82 HOH HOH . 
E 5 HOH A 82 483 83 HOH HOH . 
E 5 HOH A 83 484 84 HOH HOH . 
E 5 HOH A 84 485 85 HOH HOH . 
E 5 HOH A 85 486 86 HOH HOH . 
E 5 HOH A 86 487 87 HOH HOH . 
E 5 HOH A 87 488 88 HOH HOH . 
E 5 HOH A 88 489 89 HOH HOH . 
E 5 HOH A 89 490 90 HOH HOH . 
E 5 HOH A 90 491 91 HOH HOH . 
E 5 HOH A 91 492 92 HOH HOH . 
E 5 HOH A 92 493 93 HOH HOH . 
E 5 HOH A 93 494 94 HOH HOH . 
E 5 HOH A 94 495 95 HOH HOH . 
E 5 HOH A 95 496 96 HOH HOH . 
E 5 HOH A 96 497 97 HOH HOH . 
E 5 HOH A 97 498 98 HOH HOH . 
E 5 HOH A 98 499 99 HOH HOH . 
E 5 HOH A 99 500 100 HOH HOH . 
E 5 HOH A 100 501 101 HOH HOH . 
E 5 HOH A 101 502 102 HOH HOH . 
E 5 HOH A 102 503 103 HOH HOH . 
E 5 HOH A 103 504 104 HOH HOH . 
E 5 HOH A 104 505 105 HOH HOH . 
E 5 HOH A 105 506 106 HOH HOH . 
E 5 HOH A 106 507 107 HOH HOH . 
E 5 HOH A 107 508 108 HOH HOH . 
E 5 HOH A 108 509 109 HOH HOH . 
E 5 HOH A 109 510 110 HOH HOH . 
E 5 HOH A 110 511 111 HOH HOH . 
E 5 HOH A 111 512 112 HOH HOH . 
E 5 HOH A 112 513 113 HOH HOH . 
E 5 HOH A 113 514 114 HOH HOH . 
E 5 HOH A 114 515 115 HOH HOH . 
E 5 HOH A 115 516 116 HOH HOH . 
E 5 HOH A 116 517 117 HOH HOH . 
E 5 HOH A 117 518 118 HOH HOH . 
E 5 HOH A 118 519 119 HOH HOH . 
E 5 HOH A 119 520 120 HOH HOH . 
E 5 HOH A 120 521 121 HOH HOH . 
E 5 HOH A 121 522 122 HOH HOH . 
E 5 HOH A 122 523 123 HOH HOH . 
E 5 HOH A 123 524 124 HOH HOH . 
E 5 HOH A 124 525 125 HOH HOH . 
E 5 HOH A 125 526 126 HOH HOH . 
E 5 HOH A 126 527 127 HOH HOH . 
E 5 HOH A 127 528 128 HOH HOH . 
E 5 HOH A 128 529 129 HOH HOH . 
E 5 HOH A 129 530 130 HOH HOH . 
E 5 HOH A 130 531 131 HOH HOH . 
E 5 HOH A 131 532 132 HOH HOH . 
E 5 HOH A 132 533 133 HOH HOH . 
E 5 HOH A 133 534 134 HOH HOH . 
E 5 HOH A 134 535 135 HOH HOH . 
E 5 HOH A 135 536 136 HOH HOH . 
E 5 HOH A 136 537 137 HOH HOH . 
E 5 HOH A 137 538 138 HOH HOH . 
E 5 HOH A 138 539 139 HOH HOH . 
E 5 HOH A 139 540 140 HOH HOH . 
E 5 HOH A 140 541 141 HOH HOH . 
E 5 HOH A 141 542 142 HOH HOH . 
E 5 HOH A 142 543 143 HOH HOH . 
E 5 HOH A 143 544 144 HOH HOH . 
E 5 HOH A 144 545 145 HOH HOH . 
E 5 HOH A 145 546 146 HOH HOH . 
E 5 HOH A 146 547 147 HOH HOH . 
E 5 HOH A 147 548 148 HOH HOH . 
E 5 HOH A 148 549 149 HOH HOH . 
E 5 HOH A 149 550 150 HOH HOH . 
E 5 HOH A 150 551 151 HOH HOH . 
E 5 HOH A 151 552 152 HOH HOH . 
E 5 HOH A 152 553 153 HOH HOH . 
E 5 HOH A 153 554 154 HOH HOH . 
E 5 HOH A 154 555 155 HOH HOH . 
E 5 HOH A 155 556 156 HOH HOH . 
E 5 HOH A 156 557 157 HOH HOH . 
E 5 HOH A 157 558 158 HOH HOH . 
E 5 HOH A 158 559 159 HOH HOH . 
E 5 HOH A 159 560 160 HOH HOH . 
E 5 HOH A 160 561 161 HOH HOH . 
E 5 HOH A 161 562 162 HOH HOH . 
E 5 HOH A 162 563 163 HOH HOH . 
E 5 HOH A 163 564 164 HOH HOH . 
E 5 HOH A 164 565 165 HOH HOH . 
E 5 HOH A 165 566 166 HOH HOH . 
E 5 HOH A 166 567 167 HOH HOH . 
E 5 HOH A 167 568 168 HOH HOH . 
E 5 HOH A 168 569 169 HOH HOH . 
E 5 HOH A 169 570 170 HOH HOH . 
E 5 HOH A 170 571 171 HOH HOH . 
E 5 HOH A 171 572 172 HOH HOH . 
E 5 HOH A 172 573 173 HOH HOH . 
E 5 HOH A 173 574 174 HOH HOH . 
E 5 HOH A 174 575 175 HOH HOH . 
E 5 HOH A 175 576 176 HOH HOH . 
E 5 HOH A 176 577 177 HOH HOH . 
E 5 HOH A 177 578 178 HOH HOH . 
E 5 HOH A 178 579 179 HOH HOH . 
E 5 HOH A 179 580 180 HOH HOH . 
E 5 HOH A 180 581 181 HOH HOH . 
E 5 HOH A 181 582 182 HOH HOH . 
E 5 HOH A 182 583 183 HOH HOH . 
E 5 HOH A 183 584 184 HOH HOH . 
E 5 HOH A 184 585 185 HOH HOH . 
E 5 HOH A 185 586 186 HOH HOH . 
E 5 HOH A 186 587 187 HOH HOH . 
E 5 HOH A 187 588 188 HOH HOH . 
E 5 HOH A 188 589 189 HOH HOH . 
E 5 HOH A 189 590 190 HOH HOH . 
E 5 HOH A 190 591 191 HOH HOH . 
E 5 HOH A 191 592 192 HOH HOH . 
E 5 HOH A 192 593 193 HOH HOH . 
E 5 HOH A 193 594 194 HOH HOH . 
E 5 HOH A 194 595 195 HOH HOH . 
E 5 HOH A 195 596 196 HOH HOH . 
E 5 HOH A 196 597 197 HOH HOH . 
E 5 HOH A 197 598 198 HOH HOH . 
E 5 HOH A 198 599 199 HOH HOH . 
E 5 HOH A 199 600 200 HOH HOH . 
E 5 HOH A 200 601 201 HOH HOH . 
E 5 HOH A 201 602 202 HOH HOH . 
E 5 HOH A 202 603 203 HOH HOH . 
E 5 HOH A 203 604 204 HOH HOH . 
E 5 HOH A 204 605 205 HOH HOH . 
E 5 HOH A 205 606 206 HOH HOH . 
E 5 HOH A 206 607 207 HOH HOH . 
E 5 HOH A 207 608 208 HOH HOH . 
E 5 HOH A 208 609 209 HOH HOH . 
E 5 HOH A 209 610 210 HOH HOH . 
E 5 HOH A 210 611 211 HOH HOH . 
E 5 HOH A 211 612 212 HOH HOH . 
E 5 HOH A 212 613 213 HOH HOH . 
E 5 HOH A 213 614 214 HOH HOH . 
E 5 HOH A 214 615 215 HOH HOH . 
E 5 HOH A 215 616 216 HOH HOH . 
E 5 HOH A 216 617 217 HOH HOH . 
E 5 HOH A 217 618 218 HOH HOH . 
E 5 HOH A 218 619 219 HOH HOH . 
E 5 HOH A 219 620 220 HOH HOH . 
E 5 HOH A 220 621 221 HOH HOH . 
E 5 HOH A 221 622 222 HOH HOH . 
E 5 HOH A 222 623 223 HOH HOH . 
E 5 HOH A 223 624 224 HOH HOH . 
E 5 HOH A 224 625 225 HOH HOH . 
E 5 HOH A 225 626 226 HOH HOH . 
E 5 HOH A 226 627 227 HOH HOH . 
E 5 HOH A 227 628 228 HOH HOH . 
E 5 HOH A 228 629 229 HOH HOH . 
E 5 HOH A 229 630 230 HOH HOH . 
E 5 HOH A 230 631 231 HOH HOH . 
E 5 HOH A 231 632 232 HOH HOH . 
E 5 HOH A 232 633 233 HOH HOH . 
E 5 HOH A 233 634 234 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 19.737 38.952 5.427 1 21.81 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . D 4 20.802 39.872 5.42 1 21.77 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . D 4 20.203 37.722 4.703 1 21.33 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . D 4 20.748 38.036 3.441 1 22.93 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . D 4 19.074 36.734 4.522 1 19.92 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . D 4 19.685 35.595 4.012 1 14.36 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#