data_1T2D # _model_server_result.job_id gQPl4k9U0UKlLAWzMkgopQ _model_server_result.datetime_utc '2024-11-23 17:41:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":324}' # _entry.id 1T2D # _exptl.entry_id 1T2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T2D _cell.length_a 80.507 _cell.length_b 86.583 _cell.length_c 90.339 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.507 86.583 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 80.507 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 86.583 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1T2D _atom_sites.fract_transf_matrix[1][1] 0.012421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OXL A 1 322 317 OXL OXL . C 3 NAD A 1 323 316 NAD NAD . D 4 GOL A 1 324 1 GOL GOL . E 5 HOH A 1 325 1 HOH HOH . E 5 HOH A 2 326 2 HOH HOH . E 5 HOH A 3 327 3 HOH HOH . E 5 HOH A 4 328 4 HOH HOH . E 5 HOH A 5 329 5 HOH HOH . E 5 HOH A 6 330 6 HOH HOH . E 5 HOH A 7 331 8 HOH HOH . E 5 HOH A 8 332 9 HOH HOH . E 5 HOH A 9 333 10 HOH HOH . E 5 HOH A 10 334 11 HOH HOH . E 5 HOH A 11 335 12 HOH HOH . E 5 HOH A 12 336 13 HOH HOH . E 5 HOH A 13 337 14 HOH HOH . E 5 HOH A 14 338 15 HOH HOH . E 5 HOH A 15 339 16 HOH HOH . E 5 HOH A 16 340 18 HOH HOH . E 5 HOH A 17 341 19 HOH HOH . E 5 HOH A 18 342 20 HOH HOH . E 5 HOH A 19 343 21 HOH HOH . E 5 HOH A 20 344 22 HOH HOH . E 5 HOH A 21 345 23 HOH HOH . E 5 HOH A 22 346 24 HOH HOH . E 5 HOH A 23 347 25 HOH HOH . E 5 HOH A 24 348 26 HOH HOH . E 5 HOH A 25 349 27 HOH HOH . E 5 HOH A 26 350 28 HOH HOH . E 5 HOH A 27 351 29 HOH HOH . E 5 HOH A 28 352 30 HOH HOH . E 5 HOH A 29 353 31 HOH HOH . E 5 HOH A 30 354 32 HOH HOH . E 5 HOH A 31 355 33 HOH HOH . E 5 HOH A 32 356 34 HOH HOH . E 5 HOH A 33 357 35 HOH HOH . E 5 HOH A 34 358 36 HOH HOH . E 5 HOH A 35 359 37 HOH HOH . E 5 HOH A 36 360 38 HOH HOH . E 5 HOH A 37 361 39 HOH HOH . E 5 HOH A 38 362 40 HOH HOH . E 5 HOH A 39 363 41 HOH HOH . E 5 HOH A 40 364 42 HOH HOH . E 5 HOH A 41 365 43 HOH HOH . E 5 HOH A 42 366 44 HOH HOH . E 5 HOH A 43 367 45 HOH HOH . E 5 HOH A 44 368 46 HOH HOH . E 5 HOH A 45 369 47 HOH HOH . E 5 HOH A 46 370 48 HOH HOH . E 5 HOH A 47 371 49 HOH HOH . E 5 HOH A 48 372 50 HOH HOH . E 5 HOH A 49 373 51 HOH HOH . E 5 HOH A 50 374 52 HOH HOH . E 5 HOH A 51 375 53 HOH HOH . E 5 HOH A 52 376 54 HOH HOH . E 5 HOH A 53 377 55 HOH HOH . E 5 HOH A 54 378 56 HOH HOH . E 5 HOH A 55 379 57 HOH HOH . E 5 HOH A 56 380 58 HOH HOH . E 5 HOH A 57 381 59 HOH HOH . E 5 HOH A 58 382 60 HOH HOH . E 5 HOH A 59 383 61 HOH HOH . E 5 HOH A 60 384 62 HOH HOH . E 5 HOH A 61 385 63 HOH HOH . E 5 HOH A 62 386 64 HOH HOH . E 5 HOH A 63 387 65 HOH HOH . E 5 HOH A 64 388 66 HOH HOH . E 5 HOH A 65 389 67 HOH HOH . E 5 HOH A 66 390 68 HOH HOH . E 5 HOH A 67 391 69 HOH HOH . E 5 HOH A 68 392 70 HOH HOH . E 5 HOH A 69 393 71 HOH HOH . E 5 HOH A 70 394 72 HOH HOH . E 5 HOH A 71 395 73 HOH HOH . E 5 HOH A 72 396 74 HOH HOH . E 5 HOH A 73 397 75 HOH HOH . E 5 HOH A 74 398 76 HOH HOH . E 5 HOH A 75 399 77 HOH HOH . E 5 HOH A 76 400 78 HOH HOH . E 5 HOH A 77 401 79 HOH HOH . E 5 HOH A 78 402 80 HOH HOH . E 5 HOH A 79 403 81 HOH HOH . E 5 HOH A 80 404 82 HOH HOH . E 5 HOH A 81 405 83 HOH HOH . E 5 HOH A 82 406 84 HOH HOH . E 5 HOH A 83 407 85 HOH HOH . E 5 HOH A 84 408 86 HOH HOH . E 5 HOH A 85 409 87 HOH HOH . E 5 HOH A 86 410 88 HOH HOH . E 5 HOH A 87 411 89 HOH HOH . E 5 HOH A 88 412 90 HOH HOH . E 5 HOH A 89 413 91 HOH HOH . E 5 HOH A 90 414 92 HOH HOH . E 5 HOH A 91 415 93 HOH HOH . E 5 HOH A 92 416 94 HOH HOH . E 5 HOH A 93 417 95 HOH HOH . E 5 HOH A 94 418 96 HOH HOH . E 5 HOH A 95 419 97 HOH HOH . E 5 HOH A 96 420 98 HOH HOH . E 5 HOH A 97 421 99 HOH HOH . E 5 HOH A 98 422 100 HOH HOH . E 5 HOH A 99 423 101 HOH HOH . E 5 HOH A 100 424 102 HOH HOH . E 5 HOH A 101 425 103 HOH HOH . E 5 HOH A 102 426 104 HOH HOH . E 5 HOH A 103 427 105 HOH HOH . E 5 HOH A 104 428 106 HOH HOH . E 5 HOH A 105 429 107 HOH HOH . E 5 HOH A 106 430 108 HOH HOH . E 5 HOH A 107 431 109 HOH HOH . E 5 HOH A 108 432 110 HOH HOH . E 5 HOH A 109 433 111 HOH HOH . E 5 HOH A 110 434 112 HOH HOH . E 5 HOH A 111 435 114 HOH HOH . E 5 HOH A 112 436 115 HOH HOH . E 5 HOH A 113 437 116 HOH HOH . E 5 HOH A 114 438 117 HOH HOH . E 5 HOH A 115 439 118 HOH HOH . E 5 HOH A 116 440 119 HOH HOH . E 5 HOH A 117 441 120 HOH HOH . E 5 HOH A 118 442 121 HOH HOH . E 5 HOH A 119 443 122 HOH HOH . E 5 HOH A 120 444 123 HOH HOH . E 5 HOH A 121 445 124 HOH HOH . E 5 HOH A 122 446 125 HOH HOH . E 5 HOH A 123 447 126 HOH HOH . E 5 HOH A 124 448 127 HOH HOH . E 5 HOH A 125 449 128 HOH HOH . E 5 HOH A 126 450 129 HOH HOH . E 5 HOH A 127 451 130 HOH HOH . E 5 HOH A 128 452 131 HOH HOH . E 5 HOH A 129 453 132 HOH HOH . E 5 HOH A 130 454 133 HOH HOH . E 5 HOH A 131 455 134 HOH HOH . E 5 HOH A 132 456 135 HOH HOH . E 5 HOH A 133 457 136 HOH HOH . E 5 HOH A 134 458 137 HOH HOH . E 5 HOH A 135 459 138 HOH HOH . E 5 HOH A 136 460 139 HOH HOH . E 5 HOH A 137 461 140 HOH HOH . E 5 HOH A 138 462 141 HOH HOH . E 5 HOH A 139 463 142 HOH HOH . E 5 HOH A 140 464 143 HOH HOH . E 5 HOH A 141 465 144 HOH HOH . E 5 HOH A 142 466 145 HOH HOH . E 5 HOH A 143 467 146 HOH HOH . E 5 HOH A 144 468 147 HOH HOH . E 5 HOH A 145 469 148 HOH HOH . E 5 HOH A 146 470 149 HOH HOH . E 5 HOH A 147 471 150 HOH HOH . E 5 HOH A 148 472 151 HOH HOH . E 5 HOH A 149 473 152 HOH HOH . E 5 HOH A 150 474 153 HOH HOH . E 5 HOH A 151 475 154 HOH HOH . E 5 HOH A 152 476 155 HOH HOH . E 5 HOH A 153 477 156 HOH HOH . E 5 HOH A 154 478 157 HOH HOH . E 5 HOH A 155 479 158 HOH HOH . E 5 HOH A 156 480 159 HOH HOH . E 5 HOH A 157 481 160 HOH HOH . E 5 HOH A 158 482 161 HOH HOH . E 5 HOH A 159 483 162 HOH HOH . E 5 HOH A 160 484 163 HOH HOH . E 5 HOH A 161 485 164 HOH HOH . E 5 HOH A 162 486 165 HOH HOH . E 5 HOH A 163 487 166 HOH HOH . E 5 HOH A 164 488 167 HOH HOH . E 5 HOH A 165 489 168 HOH HOH . E 5 HOH A 166 490 169 HOH HOH . E 5 HOH A 167 491 170 HOH HOH . E 5 HOH A 168 492 171 HOH HOH . E 5 HOH A 169 493 172 HOH HOH . E 5 HOH A 170 494 173 HOH HOH . E 5 HOH A 171 495 174 HOH HOH . E 5 HOH A 172 496 175 HOH HOH . E 5 HOH A 173 497 176 HOH HOH . E 5 HOH A 174 498 177 HOH HOH . E 5 HOH A 175 499 178 HOH HOH . E 5 HOH A 176 500 179 HOH HOH . E 5 HOH A 177 501 180 HOH HOH . E 5 HOH A 178 502 181 HOH HOH . E 5 HOH A 179 503 182 HOH HOH . E 5 HOH A 180 504 183 HOH HOH . E 5 HOH A 181 505 184 HOH HOH . E 5 HOH A 182 506 185 HOH HOH . E 5 HOH A 183 507 186 HOH HOH . E 5 HOH A 184 508 187 HOH HOH . E 5 HOH A 185 509 188 HOH HOH . E 5 HOH A 186 510 189 HOH HOH . E 5 HOH A 187 511 190 HOH HOH . E 5 HOH A 188 512 192 HOH HOH . E 5 HOH A 189 513 193 HOH HOH . E 5 HOH A 190 514 194 HOH HOH . E 5 HOH A 191 515 195 HOH HOH . E 5 HOH A 192 516 196 HOH HOH . E 5 HOH A 193 517 197 HOH HOH . E 5 HOH A 194 518 198 HOH HOH . E 5 HOH A 195 519 199 HOH HOH . E 5 HOH A 196 520 200 HOH HOH . E 5 HOH A 197 521 201 HOH HOH . E 5 HOH A 198 522 202 HOH HOH . E 5 HOH A 199 523 203 HOH HOH . E 5 HOH A 200 524 204 HOH HOH . E 5 HOH A 201 525 205 HOH HOH . E 5 HOH A 202 526 206 HOH HOH . E 5 HOH A 203 527 207 HOH HOH . E 5 HOH A 204 528 208 HOH HOH . E 5 HOH A 205 529 209 HOH HOH . E 5 HOH A 206 530 210 HOH HOH . E 5 HOH A 207 531 211 HOH HOH . E 5 HOH A 208 532 212 HOH HOH . E 5 HOH A 209 533 213 HOH HOH . E 5 HOH A 210 534 214 HOH HOH . E 5 HOH A 211 535 215 HOH HOH . E 5 HOH A 212 536 216 HOH HOH . E 5 HOH A 213 537 217 HOH HOH . E 5 HOH A 214 538 218 HOH HOH . E 5 HOH A 215 539 219 HOH HOH . E 5 HOH A 216 540 220 HOH HOH . E 5 HOH A 217 541 221 HOH HOH . E 5 HOH A 218 542 222 HOH HOH . E 5 HOH A 219 543 223 HOH HOH . E 5 HOH A 220 544 224 HOH HOH . E 5 HOH A 221 545 225 HOH HOH . E 5 HOH A 222 546 226 HOH HOH . E 5 HOH A 223 547 227 HOH HOH . E 5 HOH A 224 548 228 HOH HOH . E 5 HOH A 225 549 229 HOH HOH . E 5 HOH A 226 550 230 HOH HOH . E 5 HOH A 227 551 231 HOH HOH . E 5 HOH A 228 552 232 HOH HOH . E 5 HOH A 229 553 233 HOH HOH . E 5 HOH A 230 554 234 HOH HOH . E 5 HOH A 231 555 235 HOH HOH . E 5 HOH A 232 556 237 HOH HOH . E 5 HOH A 233 557 238 HOH HOH . E 5 HOH A 234 558 239 HOH HOH . E 5 HOH A 235 559 240 HOH HOH . E 5 HOH A 236 560 241 HOH HOH . E 5 HOH A 237 561 242 HOH HOH . E 5 HOH A 238 562 243 HOH HOH . E 5 HOH A 239 563 244 HOH HOH . E 5 HOH A 240 564 245 HOH HOH . E 5 HOH A 241 565 246 HOH HOH . E 5 HOH A 242 566 247 HOH HOH . E 5 HOH A 243 567 248 HOH HOH . E 5 HOH A 244 568 249 HOH HOH . E 5 HOH A 245 569 250 HOH HOH . E 5 HOH A 246 570 251 HOH HOH . E 5 HOH A 247 571 252 HOH HOH . E 5 HOH A 248 572 253 HOH HOH . E 5 HOH A 249 573 254 HOH HOH . E 5 HOH A 250 574 255 HOH HOH . E 5 HOH A 251 575 256 HOH HOH . E 5 HOH A 252 576 257 HOH HOH . E 5 HOH A 253 577 258 HOH HOH . E 5 HOH A 254 578 259 HOH HOH . E 5 HOH A 255 579 260 HOH HOH . E 5 HOH A 256 580 261 HOH HOH . E 5 HOH A 257 581 262 HOH HOH . E 5 HOH A 258 582 263 HOH HOH . E 5 HOH A 259 583 264 HOH HOH . E 5 HOH A 260 584 265 HOH HOH . E 5 HOH A 261 585 266 HOH HOH . E 5 HOH A 262 586 267 HOH HOH . E 5 HOH A 263 587 268 HOH HOH . E 5 HOH A 264 588 269 HOH HOH . E 5 HOH A 265 589 270 HOH HOH . E 5 HOH A 266 590 271 HOH HOH . E 5 HOH A 267 591 272 HOH HOH . E 5 HOH A 268 592 273 HOH HOH . E 5 HOH A 269 593 274 HOH HOH . E 5 HOH A 270 594 275 HOH HOH . E 5 HOH A 271 595 276 HOH HOH . E 5 HOH A 272 596 277 HOH HOH . E 5 HOH A 273 597 278 HOH HOH . E 5 HOH A 274 598 279 HOH HOH . E 5 HOH A 275 599 280 HOH HOH . E 5 HOH A 276 600 281 HOH HOH . E 5 HOH A 277 601 282 HOH HOH . E 5 HOH A 278 602 283 HOH HOH . E 5 HOH A 279 603 284 HOH HOH . E 5 HOH A 280 604 285 HOH HOH . E 5 HOH A 281 605 286 HOH HOH . E 5 HOH A 282 606 287 HOH HOH . E 5 HOH A 283 607 288 HOH HOH . E 5 HOH A 284 608 289 HOH HOH . E 5 HOH A 285 609 290 HOH HOH . E 5 HOH A 286 610 291 HOH HOH . E 5 HOH A 287 611 292 HOH HOH . E 5 HOH A 288 612 293 HOH HOH . E 5 HOH A 289 613 294 HOH HOH . E 5 HOH A 290 614 295 HOH HOH . E 5 HOH A 291 615 296 HOH HOH . E 5 HOH A 292 616 297 HOH HOH . E 5 HOH A 293 617 298 HOH HOH . E 5 HOH A 294 618 299 HOH HOH . E 5 HOH A 295 619 300 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 19.717 38.808 5.28 1 9.54 ? C1 GOL 324 A 1 HETATM 2 O O1 GOL . . . D 4 20.775 39.707 5.481 1 9.76 ? O1 GOL 324 A 1 HETATM 3 C C2 GOL . . . D 4 20.22 37.512 4.674 1 8.44 ? C2 GOL 324 A 1 HETATM 4 O O2 GOL . . . D 4 20.77 37.749 3.399 1 7.97 ? O2 GOL 324 A 1 HETATM 5 C C3 GOL . . . D 4 19.064 36.541 4.538 1 8.25 ? C3 GOL 324 A 1 HETATM 6 O O3 GOL . . . D 4 19.56 35.38 3.924 1 7.49 ? O3 GOL 324 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 918 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #