data_1T43 # _model_server_result.job_id '_Rrq8nJUFUGqX_CPYKVL-A' _model_server_result.datetime_utc '2024-11-26 02:46:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1T43 # _exptl.entry_id 1T43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T43 _cell.length_a 138.933 _cell.length_b 138.933 _cell.length_c 40.583 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 1T43 _atom_sites.fract_transf_matrix[1][1] 0.007198 _atom_sites.fract_transf_matrix[1][2] 0.004155 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -14.978 100.351 -0.087 1 47.73 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 -14.684 101.71 0.344 1 46.33 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 -13.639 101.683 1.454 1 36.06 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 -12.238 101.386 0.949 1 29.95 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 -11.146 100.87 2.309 1 23.05 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 -14.181 102.61 -0.782 1 49.24 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 -13.95 102.115 -1.969 1 39.39 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 -13.599 103.72 -0.411 1 48.63 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 -12.01 99.268 2.753 1 56.29 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 -12.79 99.62 3.997 1 44.98 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 -13.567 98.49 4.484 1 45.52 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 -11.936 99.974 5.196 1 52.76 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 -11.446 101.302 5.083 1 67.97 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 -12.943 99.859 6.329 1 52.86 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 -13.727 101.026 6.42 1 47.95 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 -13.781 98.651 5.885 1 49.63 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 -13.333 97.449 6.59 1 44.6 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 -12.031 97.142 6.891 1 52.24 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 -11.888 96.019 7.545 1 51.21 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 -13.182 95.547 7.678 1 47.83 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 -13.692 94.392 8.273 1 52.45 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 -12.918 93.468 8.852 1 53.01 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 -15.033 94.212 8.253 1 47.86 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 -15.792 95.149 7.67 1 43.87 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 -15.423 96.28 7.069 1 45.91 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 -14.087 96.421 7.104 1 43.63 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #