data_1T4C # _model_server_result.job_id agBKM7BBGi79R2bpcxcQMw _model_server_result.datetime_utc '2024-10-11 21:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1T4C # _exptl.entry_id 1T4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T4C _cell.length_a 100.163 _cell.length_b 100.163 _cell.length_c 196.872 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OD2 ASP 168 B ASP 169 1_555 E C1 OXD . B OXD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 sing covale ? covale2 D S1P COA . B COA 1001 1_555 E O3 OXD . B OXD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1T4C _atom_sites.fract_transf_matrix[1][1] 0.009984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 501 1 COA COA . D 2 COA B 1 1001 1 COA COA . E 3 OXD B 1 1002 169 OXD OXX . F 4 HOH A 1 601 225 HOH HOH . F 4 HOH A 2 602 109 HOH HOH . F 4 HOH A 3 603 347 HOH HOH . F 4 HOH A 4 604 36 HOH HOH . F 4 HOH A 5 605 315 HOH HOH . F 4 HOH A 6 606 53 HOH HOH . F 4 HOH A 7 607 10 HOH HOH . F 4 HOH A 8 608 28 HOH HOH . F 4 HOH A 9 609 349 HOH HOH . F 4 HOH A 10 610 49 HOH HOH . F 4 HOH A 11 611 108 HOH HOH . F 4 HOH A 12 612 106 HOH HOH . F 4 HOH A 13 613 355 HOH HOH . F 4 HOH A 14 614 333 HOH HOH . F 4 HOH A 15 615 156 HOH HOH . F 4 HOH A 16 616 11 HOH HOH . F 4 HOH A 17 617 144 HOH HOH . F 4 HOH A 18 618 346 HOH HOH . F 4 HOH A 19 619 121 HOH HOH . F 4 HOH A 20 620 340 HOH HOH . F 4 HOH A 21 621 170 HOH HOH . F 4 HOH A 22 622 47 HOH HOH . F 4 HOH A 23 623 339 HOH HOH . F 4 HOH A 24 624 317 HOH HOH . F 4 HOH A 25 625 23 HOH HOH . F 4 HOH A 26 626 217 HOH HOH . F 4 HOH A 27 627 139 HOH HOH . F 4 HOH A 28 628 327 HOH HOH . F 4 HOH A 29 629 322 HOH HOH . F 4 HOH A 30 630 365 HOH HOH . F 4 HOH A 31 631 54 HOH HOH . F 4 HOH A 32 632 104 HOH HOH . F 4 HOH A 33 633 83 HOH HOH . F 4 HOH A 34 634 115 HOH HOH . F 4 HOH A 35 635 18 HOH HOH . F 4 HOH A 36 636 378 HOH HOH . F 4 HOH A 37 637 155 HOH HOH . F 4 HOH A 38 638 94 HOH HOH . F 4 HOH A 39 639 146 HOH HOH . F 4 HOH A 40 640 87 HOH HOH . F 4 HOH A 41 641 348 HOH HOH . F 4 HOH A 42 642 102 HOH HOH . F 4 HOH A 43 643 78 HOH HOH . F 4 HOH A 44 644 29 HOH HOH . F 4 HOH A 45 645 64 HOH HOH . F 4 HOH A 46 646 58 HOH HOH . F 4 HOH A 47 647 383 HOH HOH . F 4 HOH A 48 648 379 HOH HOH . F 4 HOH A 49 649 341 HOH HOH . F 4 HOH A 50 650 6 HOH HOH . F 4 HOH A 51 651 380 HOH HOH . F 4 HOH A 52 652 304 HOH HOH . F 4 HOH A 53 653 308 HOH HOH . F 4 HOH A 54 654 183 HOH HOH . F 4 HOH A 55 655 192 HOH HOH . F 4 HOH A 56 656 34 HOH HOH . F 4 HOH A 57 657 219 HOH HOH . F 4 HOH A 58 658 326 HOH HOH . F 4 HOH A 59 659 136 HOH HOH . F 4 HOH A 60 660 88 HOH HOH . F 4 HOH A 61 661 152 HOH HOH . F 4 HOH A 62 662 153 HOH HOH . G 4 HOH B 1 1101 135 HOH HOH . G 4 HOH B 2 1102 91 HOH HOH . G 4 HOH B 3 1103 119 HOH HOH . G 4 HOH B 4 1104 197 HOH HOH . G 4 HOH B 5 1105 351 HOH HOH . G 4 HOH B 6 1106 62 HOH HOH . G 4 HOH B 7 1107 385 HOH HOH . G 4 HOH B 8 1108 310 HOH HOH . G 4 HOH B 9 1109 320 HOH HOH . G 4 HOH B 10 1110 13 HOH HOH . G 4 HOH B 11 1111 307 HOH HOH . G 4 HOH B 12 1112 105 HOH HOH . G 4 HOH B 13 1113 97 HOH HOH . G 4 HOH B 14 1114 96 HOH HOH . G 4 HOH B 15 1115 150 HOH HOH . G 4 HOH B 16 1116 113 HOH HOH . G 4 HOH B 17 1117 89 HOH HOH . G 4 HOH B 18 1118 367 HOH HOH . G 4 HOH B 19 1119 74 HOH HOH . G 4 HOH B 20 1120 25 HOH HOH . G 4 HOH B 21 1121 302 HOH HOH . G 4 HOH B 22 1122 312 HOH HOH . G 4 HOH B 23 1123 158 HOH HOH . G 4 HOH B 24 1124 305 HOH HOH . G 4 HOH B 25 1125 366 HOH HOH . G 4 HOH B 26 1126 21 HOH HOH . G 4 HOH B 27 1127 323 HOH HOH . G 4 HOH B 28 1128 16 HOH HOH . G 4 HOH B 29 1129 8 HOH HOH . G 4 HOH B 30 1130 166 HOH HOH . G 4 HOH B 31 1131 324 HOH HOH . G 4 HOH B 32 1132 31 HOH HOH . G 4 HOH B 33 1133 133 HOH HOH . G 4 HOH B 34 1134 20 HOH HOH . G 4 HOH B 35 1135 178 HOH HOH . G 4 HOH B 36 1136 33 HOH HOH . G 4 HOH B 37 1137 12 HOH HOH . G 4 HOH B 38 1138 382 HOH HOH . G 4 HOH B 39 1139 384 HOH HOH . G 4 HOH B 40 1140 101 HOH HOH . G 4 HOH B 41 1141 165 HOH HOH . G 4 HOH B 42 1142 148 HOH HOH . G 4 HOH B 43 1143 138 HOH HOH . G 4 HOH B 44 1144 19 HOH HOH . G 4 HOH B 45 1145 309 HOH HOH . G 4 HOH B 46 1146 164 HOH HOH . G 4 HOH B 47 1147 381 HOH HOH . G 4 HOH B 48 1148 30 HOH HOH . G 4 HOH B 49 1149 50 HOH HOH . G 4 HOH B 50 1150 194 HOH HOH . G 4 HOH B 51 1151 4 HOH HOH . G 4 HOH B 52 1152 160 HOH HOH . G 4 HOH B 53 1153 331 HOH HOH . G 4 HOH B 54 1154 316 HOH HOH . G 4 HOH B 55 1155 110 HOH HOH . G 4 HOH B 56 1156 329 HOH HOH . G 4 HOH B 57 1157 318 HOH HOH . G 4 HOH B 58 1158 221 HOH HOH . G 4 HOH B 59 1159 63 HOH HOH . G 4 HOH B 60 1160 127 HOH HOH . G 4 HOH B 61 1161 334 HOH HOH . G 4 HOH B 62 1162 38 HOH HOH . G 4 HOH B 63 1163 24 HOH HOH . G 4 HOH B 64 1164 190 HOH HOH . G 4 HOH B 65 1165 362 HOH HOH . G 4 HOH B 66 1166 100 HOH HOH . G 4 HOH B 67 1167 211 HOH HOH . G 4 HOH B 68 1168 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 2 44.966 10.168 17.502 1 64.73 ? N1A COA 1001 B 1 HETATM 2 C C2A COA . . . D 2 44.592 11.236 18.302 1 67.82 ? C2A COA 1001 B 1 HETATM 3 N N3A COA . . . D 2 45.375 12.37 18.441 1 67.62 ? N3A COA 1001 B 1 HETATM 4 C C4A COA . . . D 2 46.549 12.458 17.781 1 68.08 ? C4A COA 1001 B 1 HETATM 5 C C5A COA . . . D 2 46.95 11.394 16.978 1 66.85 ? C5A COA 1001 B 1 HETATM 6 C C6A COA . . . D 2 46.157 10.242 16.836 1 64.51 ? C6A COA 1001 B 1 HETATM 7 N N6A COA . . . D 2 46.644 9.124 16.309 1 62.41 ? N6A COA 1001 B 1 HETATM 8 N N7A COA . . . D 2 48.137 11.752 16.444 1 67.57 ? N7A COA 1001 B 1 HETATM 9 C C8A COA . . . D 2 48.483 12.981 16.878 1 68.7 ? C8A COA 1001 B 1 HETATM 10 N N9A COA . . . D 2 47.509 13.446 17.709 1 70.16 ? N9A COA 1001 B 1 HETATM 11 C C1B COA . . . D 2 47.533 14.739 18.448 1 73.21 ? C1B COA 1001 B 1 HETATM 12 C C2B COA . . . D 2 48.846 15.031 19.179 1 73.59 ? C2B COA 1001 B 1 HETATM 13 O O2B COA . . . D 2 48.949 14.437 20.452 1 73.62 ? O2B COA 1001 B 1 HETATM 14 C C3B COA . . . D 2 48.785 16.517 19.328 1 73.27 ? C3B COA 1001 B 1 HETATM 15 O O3B COA . . . D 2 47.947 16.731 20.418 1 71.43 ? O3B COA 1001 B 1 HETATM 16 P P3B COA . . . D 2 48.033 18.003 21.38 1 70.02 ? P3B COA 1001 B 1 HETATM 17 O O7A COA . . . D 2 49.31 18.707 21.169 1 71.98 ? O7A COA 1001 B 1 HETATM 18 O O8A COA . . . D 2 47.948 17.388 22.796 1 67.82 ? O8A COA 1001 B 1 HETATM 19 O O9A COA . . . D 2 46.963 19.024 20.945 1 68.29 ? O9A COA 1001 B 1 HETATM 20 C C4B COA . . . D 2 48.109 16.985 18.061 1 76.33 ? C4B COA 1001 B 1 HETATM 21 O O4B COA . . . D 2 47.371 15.854 17.591 1 75.77 ? O4B COA 1001 B 1 HETATM 22 C C5B COA . . . D 2 49.111 17.49 17.016 1 78.72 ? C5B COA 1001 B 1 HETATM 23 O O5B COA . . . D 2 50.253 16.63 16.929 1 81.07 ? O5B COA 1001 B 1 HETATM 24 P P1A COA . . . D 2 51.764 17.171 16.667 1 80.44 ? P1A COA 1001 B 1 HETATM 25 O O1A COA . . . D 2 52.681 16.07 16.971 1 82.17 ? O1A COA 1001 B 1 HETATM 26 O O2A COA . . . D 2 52.195 18.415 17.455 1 76.99 ? O2A COA 1001 B 1 HETATM 27 O O3A COA . . . D 2 51.8 17.384 15.068 1 84.24 ? O3A COA 1001 B 1 HETATM 28 P P2A COA . . . D 2 52.117 18.815 14.373 1 89.69 ? P2A COA 1001 B 1 HETATM 29 O O4A COA . . . D 2 51.457 19.944 15.115 1 88.76 ? O4A COA 1001 B 1 HETATM 30 O O5A COA . . . D 2 51.708 18.715 12.88 1 88.26 ? O5A COA 1001 B 1 HETATM 31 O O6A COA . . . D 2 53.714 19.068 14.5 1 88.35 ? O6A COA 1001 B 1 HETATM 32 C CBP COA . . . D 2 56.021 18.447 14.649 1 85.26 ? CBP COA 1001 B 1 HETATM 33 C CCP COA . . . D 2 54.667 18.168 13.987 1 86.3 ? CCP COA 1001 B 1 HETATM 34 C CDP COA . . . D 2 57.033 17.718 13.758 1 85.79 ? CDP COA 1001 B 1 HETATM 35 C CEP COA . . . D 2 56.262 19.968 14.629 1 85.45 ? CEP COA 1001 B 1 HETATM 36 C CAP COA . . . D 2 56.066 17.951 16.131 1 82.21 ? CAP COA 1001 B 1 HETATM 37 O OAP COA . . . D 2 55.681 16.589 16.231 1 81.67 ? OAP COA 1001 B 1 HETATM 38 C C9P COA . . . D 2 57.403 18.199 16.828 1 78.87 ? C9P COA 1001 B 1 HETATM 39 O O9P COA . . . D 2 57.724 19.471 17.326 1 77.9 ? O9P COA 1001 B 1 HETATM 40 N N8P COA . . . D 2 58.283 17.198 16.969 1 76.14 ? N8P COA 1001 B 1 HETATM 41 C C7P COA . . . D 2 59.544 17.319 17.694 1 72.72 ? C7P COA 1001 B 1 HETATM 42 C C6P COA . . . D 2 60.758 17.394 16.792 1 70.55 ? C6P COA 1001 B 1 HETATM 43 C C5P COA . . . D 2 60.455 16.685 15.487 1 71.72 ? C5P COA 1001 B 1 HETATM 44 O O5P COA . . . D 2 60.301 15.445 15.398 1 66.79 ? O5P COA 1001 B 1 HETATM 45 N N4P COA . . . D 2 60.347 17.515 14.444 1 75.07 ? N4P COA 1001 B 1 HETATM 46 C C3P COA . . . D 2 60.917 17.264 13.128 1 75.1 ? C3P COA 1001 B 1 HETATM 47 C C2P COA . . . D 2 59.995 16.45 12.254 1 75.47 ? C2P COA 1001 B 1 HETATM 48 S S1P COA . . . D 2 60.889 14.966 11.729 1 80.92 ? S1P COA 1001 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 48 #