data_1T4G # _model_server_result.job_id mtOcsaI_XESjdWOqjSpUxw _model_server_result.datetime_utc '2025-02-28 15:09:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1T4G # _exptl.entry_id 1T4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T4G _cell.length_a 83.699 _cell.length_b 83.699 _cell.length_c 106.672 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 98 A GLN 98 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OG1 THR 112 A THR 112 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 A OD1 ASP 246 A ASP 246 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 D O2G ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc5 D O1B ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 B MG MG . A MG 501 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 B MG MG . A MG 501 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc8 B MG MG . A MG 501 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 C MG MG . A MG 502 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc10 C MG MG . A MG 502 1_555 E O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc11 C MG MG . A MG 502 1_555 E O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 C MG MG . A MG 502 1_555 E O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1T4G _atom_sites.fract_transf_matrix[1][1] 0.011948 _atom_sites.fract_transf_matrix[1][2] 0.006898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG2 . C 2 MG A 1 502 502 MG MG2 . D 3 ANP A 1 401 401 ANP ANP . E 4 HOH A 1 601 601 HOH TIP . E 4 HOH A 2 602 602 HOH TIP . E 4 HOH A 3 603 603 HOH TIP . E 4 HOH A 4 604 604 HOH TIP . E 4 HOH A 5 605 605 HOH TIP . E 4 HOH A 6 606 606 HOH TIP . E 4 HOH A 7 607 607 HOH TIP . E 4 HOH A 8 608 608 HOH TIP . E 4 HOH A 9 609 609 HOH TIP . E 4 HOH A 10 610 610 HOH TIP . E 4 HOH A 11 611 611 HOH TIP . E 4 HOH A 12 612 612 HOH TIP . E 4 HOH A 13 613 613 HOH TIP . E 4 HOH A 14 614 614 HOH TIP . E 4 HOH A 15 615 615 HOH TIP . E 4 HOH A 16 616 616 HOH TIP . E 4 HOH A 17 617 617 HOH TIP . E 4 HOH A 18 618 618 HOH TIP . E 4 HOH A 19 619 619 HOH TIP . E 4 HOH A 20 620 620 HOH TIP . E 4 HOH A 21 621 621 HOH TIP . E 4 HOH A 22 622 622 HOH TIP . E 4 HOH A 23 623 623 HOH TIP . E 4 HOH A 24 624 624 HOH TIP . E 4 HOH A 25 625 625 HOH TIP . E 4 HOH A 26 626 626 HOH TIP . E 4 HOH A 27 627 627 HOH TIP . E 4 HOH A 28 628 628 HOH TIP . E 4 HOH A 29 629 629 HOH TIP . E 4 HOH A 30 630 630 HOH TIP . E 4 HOH A 31 631 631 HOH TIP . E 4 HOH A 32 632 632 HOH TIP . E 4 HOH A 33 633 633 HOH TIP . E 4 HOH A 34 634 634 HOH TIP . E 4 HOH A 35 635 635 HOH TIP . E 4 HOH A 36 636 636 HOH TIP . E 4 HOH A 37 637 637 HOH TIP . E 4 HOH A 38 638 638 HOH TIP . E 4 HOH A 39 639 639 HOH TIP . E 4 HOH A 40 640 640 HOH TIP . E 4 HOH A 41 641 641 HOH TIP . E 4 HOH A 42 642 642 HOH TIP . E 4 HOH A 43 643 643 HOH TIP . E 4 HOH A 44 644 644 HOH TIP . E 4 HOH A 45 645 645 HOH TIP . E 4 HOH A 46 646 646 HOH TIP . E 4 HOH A 47 647 647 HOH TIP . E 4 HOH A 48 648 648 HOH TIP . E 4 HOH A 49 649 649 HOH TIP . E 4 HOH A 50 650 650 HOH TIP . E 4 HOH A 51 651 651 HOH TIP . E 4 HOH A 52 652 652 HOH TIP . E 4 HOH A 53 653 653 HOH TIP . E 4 HOH A 54 654 654 HOH TIP . E 4 HOH A 55 655 655 HOH TIP . E 4 HOH A 56 656 656 HOH TIP . E 4 HOH A 57 657 657 HOH TIP . E 4 HOH A 58 658 658 HOH TIP . E 4 HOH A 59 659 659 HOH TIP . E 4 HOH A 60 660 660 HOH TIP . E 4 HOH A 61 661 661 HOH TIP . E 4 HOH A 62 662 662 HOH TIP . E 4 HOH A 63 663 663 HOH TIP . E 4 HOH A 64 664 664 HOH TIP . E 4 HOH A 65 665 665 HOH TIP . E 4 HOH A 66 666 666 HOH TIP . E 4 HOH A 67 667 667 HOH TIP . E 4 HOH A 68 668 668 HOH TIP . E 4 HOH A 69 669 669 HOH TIP . E 4 HOH A 70 670 670 HOH TIP . E 4 HOH A 71 671 671 HOH TIP . E 4 HOH A 72 672 672 HOH TIP . E 4 HOH A 73 673 673 HOH TIP . E 4 HOH A 74 674 674 HOH TIP . E 4 HOH A 75 675 675 HOH TIP . E 4 HOH A 76 676 676 HOH TIP . E 4 HOH A 77 677 677 HOH TIP . E 4 HOH A 78 678 678 HOH TIP . E 4 HOH A 79 679 679 HOH TIP . E 4 HOH A 80 680 680 HOH TIP . E 4 HOH A 81 681 681 HOH TIP . E 4 HOH A 82 682 682 HOH TIP . E 4 HOH A 83 683 683 HOH TIP . E 4 HOH A 84 684 684 HOH TIP . E 4 HOH A 85 685 685 HOH TIP . E 4 HOH A 86 686 686 HOH TIP . E 4 HOH A 87 687 687 HOH TIP . E 4 HOH A 88 688 688 HOH TIP . E 4 HOH A 89 689 689 HOH TIP . E 4 HOH A 90 690 690 HOH TIP . E 4 HOH A 91 691 691 HOH TIP . E 4 HOH A 92 692 692 HOH TIP . E 4 HOH A 93 693 693 HOH TIP . E 4 HOH A 94 694 694 HOH TIP . E 4 HOH A 95 695 695 HOH TIP . E 4 HOH A 96 696 696 HOH TIP . E 4 HOH A 97 697 697 HOH TIP . E 4 HOH A 98 698 698 HOH TIP . E 4 HOH A 99 699 699 HOH TIP . E 4 HOH A 100 700 700 HOH TIP . E 4 HOH A 101 701 701 HOH TIP . E 4 HOH A 102 702 702 HOH TIP . E 4 HOH A 103 703 703 HOH TIP . E 4 HOH A 104 704 704 HOH TIP . E 4 HOH A 105 705 705 HOH TIP . E 4 HOH A 106 706 706 HOH TIP . E 4 HOH A 107 707 707 HOH TIP . E 4 HOH A 108 708 708 HOH TIP . E 4 HOH A 109 709 709 HOH TIP . E 4 HOH A 110 710 710 HOH TIP . E 4 HOH A 111 711 711 HOH TIP . E 4 HOH A 112 712 712 HOH TIP . E 4 HOH A 113 713 713 HOH TIP . E 4 HOH A 114 714 714 HOH TIP . E 4 HOH A 115 715 715 HOH TIP . E 4 HOH A 116 716 716 HOH TIP . E 4 HOH A 117 717 717 HOH TIP . E 4 HOH A 118 718 718 HOH TIP . E 4 HOH A 119 719 719 HOH TIP . E 4 HOH A 120 720 720 HOH TIP . E 4 HOH A 121 721 721 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 27.371 59.852 -9.823 1 27.29 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . D 3 28.665 60.301 -9.396 1 28.41 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . D 3 26.593 59.366 -8.641 1 27.56 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . D 3 26.659 60.952 -10.448 1 27.3 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . D 3 27.937 57.14 -10.596 1 24.86 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . D 3 27.128 56.625 -9.463 1 21.67 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . D 3 29.359 57.047 -10.275 1 22.75 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . D 3 27.548 58.63 -10.952 1 25.24 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . D 3 26.416 55.311 -12.094 1 23.39 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . D 3 26.524 54.117 -11.143 1 26.32 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . D 3 25.147 56.063 -11.832 1 24.98 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . D 3 27.693 56.273 -11.908 1 22.83 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . D 3 26.48 54.743 -13.632 1 24.17 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . D 3 25.792 55.391 -14.813 1 24.03 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . D 3 26.081 54.646 -15.885 1 26.09 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . D 3 25.657 53.248 -15.636 1 27.28 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . D 3 25.202 55.052 -17.096 1 26.47 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . D 3 25.406 56.316 -17.604 1 29.27 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . D 3 25.076 53.746 -17.936 1 28.16 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . D 3 26.259 53.72 -18.92 1 32.51 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . D 3 25.309 52.626 -16.907 1 27.75 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . D 3 24.086 52.034 -16.771 1 27.2 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . D 3 23.112 52.304 -15.783 1 26.03 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . D 3 22.071 51.562 -15.984 1 27.38 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . D 3 22.289 50.791 -17.072 1 26.8 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . D 3 21.535 49.84 -17.735 1 28.71 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . D 3 20.288 49.515 -17.297 1 31.74 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . D 3 22.078 49.211 -18.868 1 27.5 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . D 3 23.377 49.537 -19.344 1 26.34 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . D 3 24.145 50.469 -18.719 1 26.13 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . D 3 23.551 51.078 -17.575 1 27.28 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #