data_1T4T # _model_server_result.job_id RrsFtk1N_TZe6M6HFcCvOw _model_server_result.datetime_utc '2024-10-20 00:47:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":505}' # _entry.id 1T4T # _exptl.entry_id 1T4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T4T _cell.length_a 88.3 _cell.length_b 88.3 _cell.length_c 113.1 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 96 A HIS 101 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A OD1 ASP 119 A ASP 124 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A OD2 ASP 119 A ASP 124 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A ND1 HIS 121 A HIS 126 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 A OD2 ASP 123 A ASP 128 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 A OD2 ASP 227 A ASP 232 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 A OD2 ASP 227 A ASP 232 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc8 A OD1 ASP 229 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc9 A OD2 ASP 229 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 D MN MN . A MN 500 1_555 F OH1 DIR . A DIR 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc11 E MN MN . A MN 501 1_555 M O HOH . A HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 B ND1 HIS 96 B HIS 101 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc13 B OD1 ASP 119 B ASP 124 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc14 B OD2 ASP 119 B ASP 124 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc15 B ND1 HIS 121 B HIS 126 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc16 B OD2 ASP 123 B ASP 128 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc17 B OD2 ASP 227 B ASP 232 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc18 B OD2 ASP 227 B ASP 232 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc19 B OD1 ASP 229 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc20 B OD2 ASP 229 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc21 G MN MN . B MN 502 1_555 I OH1 DIR . B DIR 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc22 H MN MN . B MN 503 1_555 N O HOH . B HOH 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc23 C ND1 HIS 96 C HIS 101 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc24 C OD1 ASP 119 C ASP 124 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc25 C OD2 ASP 119 C ASP 124 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc26 C ND1 HIS 121 C HIS 126 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc27 C OD2 ASP 123 C ASP 128 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc28 C OD2 ASP 227 C ASP 232 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc29 C OD2 ASP 227 C ASP 232 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc30 C OD1 ASP 229 C ASP 234 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc31 C OD2 ASP 229 C ASP 234 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc32 J MN MN . C MN 504 1_555 L OH1 DIR . C DIR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc33 K MN MN . C MN 505 1_555 O O HOH . C HOH 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1T4T _atom_sites.fract_transf_matrix[1][1] 0.011325 _atom_sites.fract_transf_matrix[1][2] 0.006539 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 500 500 MN MN . E 2 MN A 1 501 501 MN MN . F 3 DIR A 1 1000 1000 DIR DIR . G 2 MN B 1 502 502 MN MN . H 2 MN B 1 503 503 MN MN . I 3 DIR B 1 1001 1001 DIR DIR . J 2 MN C 1 504 504 MN MN . K 2 MN C 1 505 505 MN MN . L 3 DIR C 1 1002 1002 DIR DIR . M 4 HOH A 1 700 700 HOH HOH . M 4 HOH A 2 710 710 HOH HOH . M 4 HOH A 3 715 715 HOH HOH . M 4 HOH A 4 718 718 HOH HOH . M 4 HOH A 5 729 729 HOH HOH . M 4 HOH A 6 733 733 HOH HOH . M 4 HOH A 7 736 736 HOH HOH . M 4 HOH A 8 740 740 HOH HOH . M 4 HOH A 9 743 743 HOH HOH . M 4 HOH A 10 751 751 HOH HOH . M 4 HOH A 11 754 754 HOH HOH . M 4 HOH A 12 757 757 HOH HOH . M 4 HOH A 13 771 771 HOH HOH . M 4 HOH A 14 773 773 HOH HOH . M 4 HOH A 15 774 774 HOH HOH . M 4 HOH A 16 784 784 HOH HOH . M 4 HOH A 17 792 792 HOH HOH . M 4 HOH A 18 793 793 HOH HOH . M 4 HOH A 19 795 795 HOH HOH . M 4 HOH A 20 797 797 HOH HOH . M 4 HOH A 21 800 800 HOH HOH . M 4 HOH A 22 804 804 HOH HOH . M 4 HOH A 23 809 809 HOH HOH . M 4 HOH A 24 811 811 HOH HOH . M 4 HOH A 25 812 812 HOH HOH . M 4 HOH A 26 817 817 HOH HOH . M 4 HOH A 27 819 819 HOH HOH . M 4 HOH A 28 820 820 HOH HOH . M 4 HOH A 29 821 821 HOH HOH . M 4 HOH A 30 826 826 HOH HOH . M 4 HOH A 31 834 834 HOH HOH . M 4 HOH A 32 842 842 HOH HOH . M 4 HOH A 33 843 843 HOH HOH . M 4 HOH A 34 844 844 HOH HOH . M 4 HOH A 35 845 845 HOH HOH . M 4 HOH A 36 850 850 HOH HOH . M 4 HOH A 37 854 854 HOH HOH . M 4 HOH A 38 855 855 HOH HOH . M 4 HOH A 39 861 861 HOH HOH . M 4 HOH A 40 864 864 HOH HOH . M 4 HOH A 41 866 866 HOH HOH . M 4 HOH A 42 870 870 HOH HOH . M 4 HOH A 43 871 871 HOH HOH . M 4 HOH A 44 872 872 HOH HOH . N 4 HOH B 1 704 704 HOH HOH . N 4 HOH B 2 705 705 HOH HOH . N 4 HOH B 3 706 706 HOH HOH . N 4 HOH B 4 709 709 HOH HOH . N 4 HOH B 5 712 712 HOH HOH . N 4 HOH B 6 713 713 HOH HOH . N 4 HOH B 7 719 719 HOH HOH . N 4 HOH B 8 725 725 HOH HOH . N 4 HOH B 9 726 726 HOH HOH . N 4 HOH B 10 730 730 HOH HOH . N 4 HOH B 11 731 731 HOH HOH . N 4 HOH B 12 732 732 HOH HOH . N 4 HOH B 13 737 737 HOH HOH . N 4 HOH B 14 738 738 HOH HOH . N 4 HOH B 15 739 739 HOH HOH . N 4 HOH B 16 744 744 HOH HOH . N 4 HOH B 17 745 745 HOH HOH . N 4 HOH B 18 746 746 HOH HOH . N 4 HOH B 19 747 747 HOH HOH . N 4 HOH B 20 749 749 HOH HOH . N 4 HOH B 21 752 752 HOH HOH . N 4 HOH B 22 756 756 HOH HOH . N 4 HOH B 23 758 758 HOH HOH . N 4 HOH B 24 760 760 HOH HOH . N 4 HOH B 25 761 761 HOH HOH . N 4 HOH B 26 763 763 HOH HOH . N 4 HOH B 27 764 764 HOH HOH . N 4 HOH B 28 765 765 HOH HOH . N 4 HOH B 29 766 766 HOH HOH . N 4 HOH B 30 767 767 HOH HOH . N 4 HOH B 31 768 768 HOH HOH . N 4 HOH B 32 770 770 HOH HOH . N 4 HOH B 33 772 772 HOH HOH . N 4 HOH B 34 775 775 HOH HOH . N 4 HOH B 35 777 777 HOH HOH . N 4 HOH B 36 778 778 HOH HOH . N 4 HOH B 37 779 779 HOH HOH . N 4 HOH B 38 781 781 HOH HOH . N 4 HOH B 39 782 782 HOH HOH . N 4 HOH B 40 785 785 HOH HOH . N 4 HOH B 41 788 788 HOH HOH . N 4 HOH B 42 790 790 HOH HOH . N 4 HOH B 43 796 796 HOH HOH . N 4 HOH B 44 798 798 HOH HOH . N 4 HOH B 45 799 799 HOH HOH . N 4 HOH B 46 801 801 HOH HOH . N 4 HOH B 47 802 802 HOH HOH . N 4 HOH B 48 807 807 HOH HOH . N 4 HOH B 49 810 810 HOH HOH . N 4 HOH B 50 816 816 HOH HOH . N 4 HOH B 51 818 818 HOH HOH . N 4 HOH B 52 823 823 HOH HOH . N 4 HOH B 53 825 825 HOH HOH . N 4 HOH B 54 827 827 HOH HOH . N 4 HOH B 55 833 833 HOH HOH . N 4 HOH B 56 838 838 HOH HOH . N 4 HOH B 57 839 839 HOH HOH . N 4 HOH B 58 847 847 HOH HOH . N 4 HOH B 59 848 848 HOH HOH . N 4 HOH B 60 849 849 HOH HOH . N 4 HOH B 61 851 851 HOH HOH . N 4 HOH B 62 852 852 HOH HOH . N 4 HOH B 63 853 853 HOH HOH . N 4 HOH B 64 860 860 HOH HOH . N 4 HOH B 65 862 862 HOH HOH . N 4 HOH B 66 863 863 HOH HOH . N 4 HOH B 67 865 865 HOH HOH . N 4 HOH B 68 867 867 HOH HOH . N 4 HOH B 69 873 873 HOH HOH . N 4 HOH B 70 874 874 HOH HOH . N 4 HOH B 71 875 875 HOH HOH . N 4 HOH B 72 876 876 HOH HOH . O 4 HOH C 1 701 701 HOH HOH . O 4 HOH C 2 702 702 HOH HOH . O 4 HOH C 3 703 703 HOH HOH . O 4 HOH C 4 707 707 HOH HOH . O 4 HOH C 5 708 708 HOH HOH . O 4 HOH C 6 711 711 HOH HOH . O 4 HOH C 7 714 714 HOH HOH . O 4 HOH C 8 716 716 HOH HOH . O 4 HOH C 9 717 717 HOH HOH . O 4 HOH C 10 720 720 HOH HOH . O 4 HOH C 11 721 721 HOH HOH . O 4 HOH C 12 722 722 HOH HOH . O 4 HOH C 13 723 723 HOH HOH . O 4 HOH C 14 724 724 HOH HOH . O 4 HOH C 15 727 727 HOH HOH . O 4 HOH C 16 728 728 HOH HOH . O 4 HOH C 17 734 734 HOH HOH . O 4 HOH C 18 735 735 HOH HOH . O 4 HOH C 19 741 741 HOH HOH . O 4 HOH C 20 742 742 HOH HOH . O 4 HOH C 21 748 748 HOH HOH . O 4 HOH C 22 750 750 HOH HOH . O 4 HOH C 23 753 753 HOH HOH . O 4 HOH C 24 755 755 HOH HOH . O 4 HOH C 25 759 759 HOH HOH . O 4 HOH C 26 762 762 HOH HOH . O 4 HOH C 27 769 769 HOH HOH . O 4 HOH C 28 776 776 HOH HOH . O 4 HOH C 29 780 780 HOH HOH . O 4 HOH C 30 783 783 HOH HOH . O 4 HOH C 31 786 786 HOH HOH . O 4 HOH C 32 787 787 HOH HOH . O 4 HOH C 33 789 789 HOH HOH . O 4 HOH C 34 791 791 HOH HOH . O 4 HOH C 35 794 794 HOH HOH . O 4 HOH C 36 803 803 HOH HOH . O 4 HOH C 37 805 805 HOH HOH . O 4 HOH C 38 806 806 HOH HOH . O 4 HOH C 39 808 808 HOH HOH . O 4 HOH C 40 813 813 HOH HOH . O 4 HOH C 41 814 814 HOH HOH . O 4 HOH C 42 815 815 HOH HOH . O 4 HOH C 43 822 822 HOH HOH . O 4 HOH C 44 824 824 HOH HOH . O 4 HOH C 45 828 828 HOH HOH . O 4 HOH C 46 829 829 HOH HOH . O 4 HOH C 47 830 830 HOH HOH . O 4 HOH C 48 831 831 HOH HOH . O 4 HOH C 49 832 832 HOH HOH . O 4 HOH C 50 835 835 HOH HOH . O 4 HOH C 51 836 836 HOH HOH . O 4 HOH C 52 837 837 HOH HOH . O 4 HOH C 53 840 840 HOH HOH . O 4 HOH C 54 841 841 HOH HOH . O 4 HOH C 55 846 846 HOH HOH . O 4 HOH C 56 856 856 HOH HOH . O 4 HOH C 57 857 857 HOH HOH . O 4 HOH C 58 858 858 HOH HOH . O 4 HOH C 59 859 859 HOH HOH . O 4 HOH C 60 868 868 HOH HOH . O 4 HOH C 61 869 869 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x -36.523 _atom_site.Cartn_y 30.552 _atom_site.Cartn_z 1.223 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 505 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #