data_1T56 # _model_server_result.job_id zcAJY2xtSLGVnPDYYYl-6Q _model_server_result.datetime_utc '2024-11-23 01:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1T56 # _exptl.entry_id 1T56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T56 _cell.length_a 121.5 _cell.length_b 121.5 _cell.length_c 33.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 33.5 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 130 n n C1 C2 GOL sing 131 n n C1 H11 GOL sing 132 n n C1 H12 GOL sing 133 n n O1 HO1 GOL sing 134 n n C2 O2 GOL sing 135 n n C2 C3 GOL sing 136 n n C2 H2 GOL sing 137 n n O2 HO2 GOL sing 138 n n C3 O3 GOL sing 139 n n C3 H31 GOL sing 140 n n C3 H32 GOL sing 141 n n O3 HO3 GOL sing 142 n n # _atom_sites.entry_id 1T56 _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DIO A 1 300 300 DIO DOX . C 2 DIO A 1 301 301 DIO DOX . D 3 GOL A 1 302 302 GOL GOL . E 4 HOH A 1 303 1 HOH HOH . E 4 HOH A 2 304 2 HOH HOH . E 4 HOH A 3 305 3 HOH HOH . E 4 HOH A 4 306 4 HOH HOH . E 4 HOH A 5 307 5 HOH HOH . E 4 HOH A 6 308 6 HOH HOH . E 4 HOH A 7 309 7 HOH HOH . E 4 HOH A 8 310 8 HOH HOH . E 4 HOH A 9 311 9 HOH HOH . E 4 HOH A 10 312 10 HOH HOH . E 4 HOH A 11 313 11 HOH HOH . E 4 HOH A 12 314 12 HOH HOH . E 4 HOH A 13 315 13 HOH HOH . E 4 HOH A 14 316 14 HOH HOH . E 4 HOH A 15 317 15 HOH HOH . E 4 HOH A 16 318 16 HOH HOH . E 4 HOH A 17 319 17 HOH HOH . E 4 HOH A 18 320 18 HOH HOH . E 4 HOH A 19 321 19 HOH HOH . E 4 HOH A 20 322 20 HOH HOH . E 4 HOH A 21 323 21 HOH HOH . E 4 HOH A 22 324 22 HOH HOH . E 4 HOH A 23 325 23 HOH HOH . E 4 HOH A 24 326 24 HOH HOH . E 4 HOH A 25 327 25 HOH HOH . E 4 HOH A 26 328 26 HOH HOH . E 4 HOH A 27 329 27 HOH HOH . E 4 HOH A 28 330 28 HOH HOH . E 4 HOH A 29 331 29 HOH HOH . E 4 HOH A 30 332 30 HOH HOH . E 4 HOH A 31 333 31 HOH HOH . E 4 HOH A 32 334 32 HOH HOH . E 4 HOH A 33 335 33 HOH HOH . E 4 HOH A 34 336 34 HOH HOH . E 4 HOH A 35 337 35 HOH HOH . E 4 HOH A 36 338 36 HOH HOH . E 4 HOH A 37 339 37 HOH HOH . E 4 HOH A 38 340 38 HOH HOH . E 4 HOH A 39 341 39 HOH HOH . E 4 HOH A 40 342 40 HOH HOH . E 4 HOH A 41 343 41 HOH HOH . E 4 HOH A 42 344 42 HOH HOH . E 4 HOH A 43 345 43 HOH HOH . E 4 HOH A 44 346 44 HOH HOH . E 4 HOH A 45 347 45 HOH HOH . E 4 HOH A 46 348 46 HOH HOH . E 4 HOH A 47 349 47 HOH HOH . E 4 HOH A 48 350 48 HOH HOH . E 4 HOH A 49 351 49 HOH HOH . E 4 HOH A 50 352 50 HOH HOH . E 4 HOH A 51 353 51 HOH HOH . E 4 HOH A 52 354 52 HOH HOH . E 4 HOH A 53 355 53 HOH HOH . E 4 HOH A 54 356 54 HOH HOH . E 4 HOH A 55 357 55 HOH HOH . E 4 HOH A 56 358 56 HOH HOH . E 4 HOH A 57 359 57 HOH HOH . E 4 HOH A 58 360 58 HOH HOH . E 4 HOH A 59 361 59 HOH HOH . E 4 HOH A 60 362 60 HOH HOH . E 4 HOH A 61 363 61 HOH HOH . E 4 HOH A 62 364 62 HOH HOH . E 4 HOH A 63 365 63 HOH HOH . E 4 HOH A 64 366 64 HOH HOH . E 4 HOH A 65 367 65 HOH HOH . E 4 HOH A 66 368 66 HOH HOH . E 4 HOH A 67 369 67 HOH HOH . E 4 HOH A 68 370 68 HOH HOH . E 4 HOH A 69 371 69 HOH HOH . E 4 HOH A 70 372 70 HOH HOH . E 4 HOH A 71 373 71 HOH HOH . E 4 HOH A 72 374 72 HOH HOH . E 4 HOH A 73 375 73 HOH HOH . E 4 HOH A 74 376 74 HOH HOH . E 4 HOH A 75 377 75 HOH HOH . E 4 HOH A 76 378 76 HOH HOH . E 4 HOH A 77 379 77 HOH HOH . E 4 HOH A 78 380 78 HOH HOH . E 4 HOH A 79 381 79 HOH HOH . E 4 HOH A 80 382 80 HOH HOH . E 4 HOH A 81 383 81 HOH HOH . E 4 HOH A 82 384 82 HOH HOH . E 4 HOH A 83 385 83 HOH HOH . E 4 HOH A 84 386 84 HOH HOH . E 4 HOH A 85 387 85 HOH HOH . E 4 HOH A 86 388 86 HOH HOH . E 4 HOH A 87 389 87 HOH HOH . E 4 HOH A 88 390 88 HOH HOH . E 4 HOH A 89 391 89 HOH HOH . E 4 HOH A 90 392 90 HOH HOH . E 4 HOH A 91 393 91 HOH HOH . E 4 HOH A 92 394 92 HOH HOH . E 4 HOH A 93 395 93 HOH HOH . E 4 HOH A 94 396 94 HOH HOH . E 4 HOH A 95 397 95 HOH HOH . E 4 HOH A 96 398 96 HOH HOH . E 4 HOH A 97 399 97 HOH HOH . E 4 HOH A 98 400 98 HOH HOH . E 4 HOH A 99 401 99 HOH HOH . E 4 HOH A 100 402 100 HOH HOH . E 4 HOH A 101 403 101 HOH HOH . E 4 HOH A 102 404 102 HOH HOH . E 4 HOH A 103 405 103 HOH HOH . E 4 HOH A 104 406 104 HOH HOH . E 4 HOH A 105 407 105 HOH HOH . E 4 HOH A 106 408 106 HOH HOH . E 4 HOH A 107 409 107 HOH HOH . E 4 HOH A 108 410 108 HOH HOH . E 4 HOH A 109 411 109 HOH HOH . E 4 HOH A 110 412 110 HOH HOH . E 4 HOH A 111 413 111 HOH HOH . E 4 HOH A 112 414 112 HOH HOH . E 4 HOH A 113 415 113 HOH HOH . E 4 HOH A 114 416 114 HOH HOH . E 4 HOH A 115 417 115 HOH HOH . E 4 HOH A 116 418 116 HOH HOH . E 4 HOH A 117 419 117 HOH HOH . E 4 HOH A 118 420 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 36.638 4.927 21.878 1 37.62 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 37.852 5.27 21.251 1 39.63 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 35.569 5.91 21.417 1 38.2 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 34.372 5.622 22.087 1 39.14 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 35.337 5.834 19.912 1 37.82 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 36.284 4.992 19.3 1 40.01 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #