data_1T5P # _model_server_result.job_id 06US38qx5ydgIrPHLzjQvg _model_server_result.datetime_utc '2025-03-06 01:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 1T5P # _exptl.entry_id 1T5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 694.599 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 12-PHENYLHEME _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 1T5P _cell.length_a 52.914 _cell.length_b 64.425 _cell.length_c 60.467 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE 1FH . A 1FH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 B NE2 HIS 25 B HIS 25 1_555 D FE 1FH . B 1FH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C40 H38 Fe N4 O4 2' _chem_comp.formula_weight 694.599 _chem_comp.id 1FH _chem_comp.mon_nstd_flag . _chem_comp.name 12-PHENYLHEME _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA 1FH sing 1 n n FE NB 1FH sing 2 n n FE NC 1FH sing 3 n n FE ND 1FH sing 4 n n NA C1A 1FH sing 5 n n NA C4A 1FH doub 6 n n NB C1B 1FH sing 7 n y NB C4B 1FH sing 8 n y NC C1C 1FH doub 9 n n NC C4C 1FH sing 10 n n ND C4D 1FH sing 11 n y ND C1D 1FH sing 12 n y C1A CHA 1FH doub 13 n n C1A C2A 1FH sing 14 n n CHA C4D 1FH sing 15 n n CHA HHA 1FH sing 16 n n C4D C3D 1FH doub 17 n y C1B CHB 1FH doub 18 n n C1B C2B 1FH sing 19 n y CHB C4A 1FH sing 20 n n CHB HHB 1FH sing 21 n n C4A C3A 1FH sing 22 n n C1C CHC 1FH sing 23 n n C1C C2C 1FH sing 24 n n CHC C4B 1FH doub 25 n n CHC CG 1FH sing 26 n n C4B C3B 1FH sing 27 n y C1D CHD 1FH sing 28 n n C1D C2D 1FH doub 29 n y CHD C4C 1FH doub 30 n n CHD HHD 1FH sing 31 n n C4C C3C 1FH sing 32 n n C2A CAA 1FH sing 33 n n C2A C3A 1FH doub 34 n n CAA CBA 1FH sing 35 n n CAA HAA1 1FH sing 36 n n CAA HAA2 1FH sing 37 n n C3A CMA 1FH sing 38 n n CMA HMA1 1FH sing 39 n n CMA HMA2 1FH sing 40 n n CMA HMA3 1FH sing 41 n n CBA CGA 1FH sing 42 n n CBA HBA1 1FH sing 43 n n CBA HBA2 1FH sing 44 n n CGA O1A 1FH doub 45 n n CGA O2A 1FH sing 46 n n O2A H2A 1FH sing 47 n n C2B CMB 1FH sing 48 n n C2B C3B 1FH doub 49 n y CMB HMB1 1FH sing 50 n n CMB HMB2 1FH sing 51 n n CMB HMB3 1FH sing 52 n n C3B CAB 1FH sing 53 n n CAB CBB 1FH doub 54 n n CAB HAB 1FH sing 55 n n CBB HBB1 1FH sing 56 n n CBB HBB2 1FH sing 57 n n C2C CMC 1FH sing 58 n n C2C C3C 1FH sing 59 n n C2C H2C 1FH sing 60 n n CMC HMC1 1FH sing 61 n n CMC HMC2 1FH sing 62 n n CMC HMC3 1FH sing 63 n n C3C CAC 1FH sing 64 n n C3C H3C 1FH sing 65 n n CAC CBC 1FH doub 66 n n CAC HAC 1FH sing 67 n n CBC HBC1 1FH sing 68 n n CBC HBC2 1FH sing 69 n n C2D CMD 1FH sing 70 n n C2D C3D 1FH sing 71 n y CMD HMD1 1FH sing 72 n n CMD HMD2 1FH sing 73 n n CMD HMD3 1FH sing 74 n n C3D CAD 1FH sing 75 n n CAD CBD 1FH sing 76 n n CAD HAD1 1FH sing 77 n n CAD HAD2 1FH sing 78 n n CBD CGD 1FH sing 79 n n CBD HBD1 1FH sing 80 n n CBD HBD2 1FH sing 81 n n CGD O1D 1FH sing 82 n n CGD O2D 1FH doub 83 n n O1D H1D 1FH sing 84 n n CG CD1 1FH doub 85 n y CG CD2 1FH sing 86 n y CD1 CE1 1FH sing 87 n y CD1 HD1 1FH sing 88 n n CD2 CE2 1FH doub 89 n y CD2 HD2 1FH sing 90 n n CE1 CZ 1FH doub 91 n y CE1 HE1 1FH sing 92 n n CE2 CZ 1FH sing 93 n y CE2 HE2 1FH sing 94 n n CZ HZ 1FH sing 95 n n # _atom_sites.entry_id 1T5P _atom_sites.fract_transf_matrix[1][1] 0.018899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1FH A 1 300 300 1FH HEM . D 2 1FH B 1 300 300 1FH HEM . E 3 HOH A 1 301 3 HOH HOH . E 3 HOH A 2 302 4 HOH HOH . E 3 HOH A 3 303 6 HOH HOH . E 3 HOH A 4 304 7 HOH HOH . E 3 HOH A 5 305 8 HOH HOH . E 3 HOH A 6 306 9 HOH HOH . E 3 HOH A 7 307 14 HOH HOH . E 3 HOH A 8 308 16 HOH HOH . E 3 HOH A 9 309 17 HOH HOH . E 3 HOH A 10 310 18 HOH HOH . E 3 HOH A 11 311 19 HOH HOH . E 3 HOH A 12 312 20 HOH HOH . E 3 HOH A 13 313 21 HOH HOH . E 3 HOH A 14 314 22 HOH HOH . E 3 HOH A 15 315 23 HOH HOH . E 3 HOH A 16 316 24 HOH HOH . E 3 HOH A 17 317 25 HOH HOH . E 3 HOH A 18 318 26 HOH HOH . E 3 HOH A 19 319 27 HOH HOH . E 3 HOH A 20 320 28 HOH HOH . E 3 HOH A 21 321 29 HOH HOH . E 3 HOH A 22 322 31 HOH HOH . E 3 HOH A 23 323 32 HOH HOH . E 3 HOH A 24 324 33 HOH HOH . E 3 HOH A 25 325 34 HOH HOH . E 3 HOH A 26 326 35 HOH HOH . E 3 HOH A 27 327 36 HOH HOH . E 3 HOH A 28 328 37 HOH HOH . E 3 HOH A 29 329 39 HOH HOH . E 3 HOH A 30 330 40 HOH HOH . E 3 HOH A 31 331 41 HOH HOH . E 3 HOH A 32 332 44 HOH HOH . E 3 HOH A 33 333 45 HOH HOH . E 3 HOH A 34 334 46 HOH HOH . E 3 HOH A 35 335 47 HOH HOH . E 3 HOH A 36 336 48 HOH HOH . E 3 HOH A 37 337 51 HOH HOH . E 3 HOH A 38 338 52 HOH HOH . E 3 HOH A 39 339 53 HOH HOH . E 3 HOH A 40 340 54 HOH HOH . E 3 HOH A 41 341 55 HOH HOH . F 3 HOH B 1 301 1 HOH HOH . F 3 HOH B 2 302 2 HOH HOH . F 3 HOH B 3 303 5 HOH HOH . F 3 HOH B 4 304 10 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 13 HOH HOH . F 3 HOH B 8 308 15 HOH HOH . F 3 HOH B 9 309 30 HOH HOH . F 3 HOH B 10 310 50 HOH HOH . F 3 HOH B 11 311 57 HOH HOH . F 3 HOH B 12 312 60 HOH HOH . F 3 HOH B 13 313 61 HOH HOH . F 3 HOH B 14 314 62 HOH HOH . F 3 HOH B 15 315 63 HOH HOH . F 3 HOH B 16 316 64 HOH HOH . F 3 HOH B 17 317 65 HOH HOH . F 3 HOH B 18 318 66 HOH HOH . F 3 HOH B 19 319 67 HOH HOH . F 3 HOH B 20 320 68 HOH HOH . F 3 HOH B 21 321 70 HOH HOH . F 3 HOH B 22 322 71 HOH HOH . F 3 HOH B 23 323 73 HOH HOH . F 3 HOH B 24 324 75 HOH HOH . F 3 HOH B 25 325 76 HOH HOH . F 3 HOH B 26 326 77 HOH HOH . F 3 HOH B 27 327 78 HOH HOH . F 3 HOH B 28 328 82 HOH HOH . F 3 HOH B 29 329 83 HOH HOH . F 3 HOH B 30 330 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE 1FH . . . D 2 44.278 0.758 34.835 1 50.67 ? FE 1FH 300 B 1 HETATM 2 N NA 1FH . . . D 2 45.021 -0.007 36.52 1 50.82 ? NA 1FH 300 B 1 HETATM 3 N NB 1FH . . . D 2 46.198 1.258 34.316 1 50.79 ? NB 1FH 300 B 1 HETATM 4 N NC 1FH . . . D 2 43.614 1.538 33.184 1 50.59 ? NC 1FH 300 B 1 HETATM 5 N ND 1FH . . . D 2 42.424 0.239 35.44 1 50.32 ? ND 1FH 300 B 1 HETATM 6 C C1A 1FH . . . D 2 44.321 -0.631 37.578 1 51.34 ? C1A 1FH 300 B 1 HETATM 7 C CHA 1FH . . . D 2 42.914 -0.811 37.597 1 50.62 ? CHA 1FH 300 B 1 HETATM 8 C C4D 1FH . . . D 2 42.052 -0.409 36.615 1 50.02 ? C4D 1FH 300 B 1 HETATM 9 C C1B 1FH . . . D 2 47.364 1.015 35.079 1 50.65 ? C1B 1FH 300 B 1 HETATM 10 C CHB 1FH . . . D 2 47.417 0.41 36.278 1 50.96 ? CHB 1FH 300 B 1 HETATM 11 C C4A 1FH . . . D 2 46.333 -0.069 36.955 1 51.18 ? C4A 1FH 300 B 1 HETATM 12 C C1C 1FH . . . D 2 44.328 2.176 32.092 1 50.87 ? C1C 1FH 300 B 1 HETATM 13 C CHC 1FH . . . D 2 45.795 2.361 32.046 1 51.14 ? CHC 1FH 300 B 1 HETATM 14 C C4B 1FH . . . D 2 46.663 1.917 33.134 1 50.96 ? C4B 1FH 300 B 1 HETATM 15 C C1D 1FH . . . D 2 41.218 0.446 34.779 1 49.97 ? C1D 1FH 300 B 1 HETATM 16 C CHD 1FH . . . D 2 41.15 1.073 33.558 1 50.11 ? CHD 1FH 300 B 1 HETATM 17 C C4C 1FH . . . D 2 42.254 1.577 32.815 1 50.47 ? C4C 1FH 300 B 1 HETATM 18 C C2A 1FH . . . D 2 45.236 -1.096 38.699 1 51.78 ? C2A 1FH 300 B 1 HETATM 19 C CAA 1FH . . . D 2 44.9 -1.821 40.037 1 52.74 ? CAA 1FH 300 B 1 HETATM 20 C C3A 1FH . . . D 2 46.472 -0.732 38.288 1 51.57 ? C3A 1FH 300 B 1 HETATM 21 C CMA 1FH . . . D 2 47.759 -1 39.128 1 51.38 ? CMA 1FH 300 B 1 HETATM 22 C CBA 1FH . . . D 2 44.472 -3.298 39.915 1 54.14 ? CBA 1FH 300 B 1 HETATM 23 C CGA 1FH . . . D 2 43.248 -3.637 40.785 1 54.76 ? CGA 1FH 300 B 1 HETATM 24 O O1A 1FH . . . D 2 43.346 -3.525 42.043 1 55.24 ? O1A 1FH 300 B 1 HETATM 25 O O2A 1FH . . . D 2 42.188 -4.014 40.211 1 54.9 ? O2A 1FH 300 B 1 HETATM 26 C C2B 1FH . . . D 2 48.57 1.484 34.454 1 51.13 ? C2B 1FH 300 B 1 HETATM 27 C CMB 1FH . . . D 2 50.029 1.379 35.025 1 51.05 ? CMB 1FH 300 B 1 HETATM 28 C C3B 1FH . . . D 2 48.204 2.05 33.257 1 51.11 ? C3B 1FH 300 B 1 HETATM 29 C CAB 1FH . . . D 2 49.168 2.617 32.392 1 50.94 ? CAB 1FH 300 B 1 HETATM 30 C CBB 1FH . . . D 2 49.359 4.047 32.241 1 51.15 ? CBB 1FH 300 B 1 HETATM 31 C C2C 1FH . . . D 2 43.329 2.611 31.038 1 50.61 ? C2C 1FH 300 B 1 HETATM 32 C CMC 1FH . . . D 2 43.489 3.34 29.66 1 50.59 ? CMC 1FH 300 B 1 HETATM 33 C C3C 1FH . . . D 2 42.103 2.23 31.522 1 50.6 ? C3C 1FH 300 B 1 HETATM 34 C CAC 1FH . . . D 2 40.888 2.45 30.848 1 50.58 ? CAC 1FH 300 B 1 HETATM 35 C CBC 1FH . . . D 2 40.169 3.655 31.215 1 51.18 ? CBC 1FH 300 B 1 HETATM 36 C C2D 1FH . . . D 2 40.09 -0.084 35.565 1 49.74 ? C2D 1FH 300 B 1 HETATM 37 C CMD 1FH . . . D 2 38.604 -0.078 35.24 1 49.41 ? CMD 1FH 300 B 1 HETATM 38 C C3D 1FH . . . D 2 40.608 -0.622 36.707 1 49.69 ? C3D 1FH 300 B 1 HETATM 39 C CAD 1FH . . . D 2 39.849 -1.305 37.865 1 49.59 ? CAD 1FH 300 B 1 HETATM 40 C CBD 1FH . . . D 2 39.636 -2.821 37.928 1 49.35 ? CBD 1FH 300 B 1 HETATM 41 C CGD 1FH . . . D 2 38.852 -3.257 39.176 1 49.37 ? CGD 1FH 300 B 1 HETATM 42 O O1D 1FH . . . D 2 37.945 -4.117 39.046 1 49.16 ? O1D 1FH 300 B 1 HETATM 43 O O2D 1FH . . . D 2 39.152 -2.738 40.294 1 49.1 ? O2D 1FH 300 B 1 HETATM 44 C CG 1FH . . . D 2 46.418 1.858 30.732 1 51.67 ? CG 1FH 300 B 1 HETATM 45 C CD1 1FH . . . D 2 46.562 0.479 30.401 1 52.01 ? CD1 1FH 300 B 1 HETATM 46 C CD2 1FH . . . D 2 46.884 2.837 29.778 1 52.04 ? CD2 1FH 300 B 1 HETATM 47 C CE1 1FH . . . D 2 47.151 0.081 29.16 1 52.36 ? CE1 1FH 300 B 1 HETATM 48 C CE2 1FH . . . D 2 47.457 2.427 28.567 1 52.35 ? CE2 1FH 300 B 1 HETATM 49 C CZ 1FH . . . D 2 47.598 1.056 28.245 1 52.33 ? CZ 1FH 300 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #