data_1T67 # _model_server_result.job_id JDmbuk4b7fg8ftHPwyOMJA _model_server_result.datetime_utc '2024-11-23 23:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":381}' # _entry.id 1T67 # _exptl.entry_id 1T67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.388 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T67 _cell.length_a 80.644 _cell.length_b 80.644 _cell.length_c 105.523 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A O ASP 176 A ASP 176 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 B ZN ZN . A ZN 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 B ZN ZN . A ZN 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 D NA NA . A NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 D NA NA . A NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 D NA NA . A NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 C NA NA . A NA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc12 A OD2 ASP 267 A ASP 267 1_555 B ZN ZN . A ZN 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc13 B ZN ZN . A ZN 378 1_555 E O4 B3N . A B3N 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc14 B ZN ZN . A ZN 378 1_555 E N3 B3N . A B3N 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc15 B ZN ZN . A ZN 378 1_555 E O2 B3N . A B3N 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc16 D NA NA . A NA 380 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc17 D NA NA . A NA 380 1_555 F O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C16 H25 N3 O3' _chem_comp.formula_weight 307.388 _chem_comp.id B3N _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms M344 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C13 B3N doub 70 n n C13 C14 B3N sing 71 n n C13 N12 B3N sing 72 n n C14 C15 B3N doub 73 n y C14 C19 B3N sing 74 n y C15 C16 B3N sing 75 n y C15 H15 B3N sing 76 n n C16 C17 B3N doub 77 n y C16 H16 B3N sing 78 n n C17 N20 B3N sing 79 n n C17 C18 B3N sing 80 n y N20 C22 B3N sing 81 n n N20 C21 B3N sing 82 n n C22 H221 B3N sing 83 n n C22 H222 B3N sing 84 n n C22 H223 B3N sing 85 n n C21 H211 B3N sing 86 n n C21 H212 B3N sing 87 n n C21 H213 B3N sing 88 n n C18 C19 B3N doub 89 n y C18 H18 B3N sing 90 n n C19 H19 B3N sing 91 n n N12 C10 B3N sing 92 n n N12 H12 B3N sing 93 n n C10 C9 B3N sing 94 n n C10 H101 B3N sing 95 n n C10 H102 B3N sing 96 n n C9 C8 B3N sing 97 n n C9 H91 B3N sing 98 n n C9 H92 B3N sing 99 n n C8 C7 B3N sing 100 n n C8 H81 B3N sing 101 n n C8 H82 B3N sing 102 n n C7 C6 B3N sing 103 n n C7 H71 B3N sing 104 n n C7 H72 B3N sing 105 n n C6 C5 B3N sing 106 n n C6 H61 B3N sing 107 n n C6 H62 B3N sing 108 n n C5 C1 B3N sing 109 n n C5 H51 B3N sing 110 n n C5 H52 B3N sing 111 n n C1 O2 B3N doub 112 n n C1 N3 B3N sing 113 n n N3 O4 B3N sing 114 n n N3 H24 B3N sing 115 n n O4 H25 B3N sing 116 n n # _atom_sites.entry_id 1T67 _atom_sites.fract_transf_matrix[1][1] 0.0124 _atom_sites.fract_transf_matrix[1][2] 0.007159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 378 378 ZN ZN . C 3 NA A 1 379 379 NA NA . D 3 NA A 1 380 380 NA NA . E 4 B3N A 1 381 381 B3N B3N . F 5 HOH A 1 382 382 HOH HOH . F 5 HOH A 2 383 383 HOH HOH . F 5 HOH A 3 384 384 HOH HOH . F 5 HOH A 4 385 385 HOH HOH . F 5 HOH A 5 386 386 HOH HOH . F 5 HOH A 6 387 387 HOH HOH . F 5 HOH A 7 388 388 HOH HOH . F 5 HOH A 8 389 389 HOH HOH . F 5 HOH A 9 390 390 HOH HOH . F 5 HOH A 10 391 391 HOH HOH . F 5 HOH A 11 392 392 HOH HOH . F 5 HOH A 12 393 393 HOH HOH . F 5 HOH A 13 394 394 HOH HOH . F 5 HOH A 14 395 395 HOH HOH . F 5 HOH A 15 396 396 HOH HOH . F 5 HOH A 16 397 397 HOH HOH . F 5 HOH A 17 398 398 HOH HOH . F 5 HOH A 18 399 399 HOH HOH . F 5 HOH A 19 400 400 HOH HOH . F 5 HOH A 20 401 401 HOH HOH . F 5 HOH A 21 402 402 HOH HOH . F 5 HOH A 22 403 403 HOH HOH . F 5 HOH A 23 404 404 HOH HOH . F 5 HOH A 24 405 405 HOH HOH . F 5 HOH A 25 406 406 HOH HOH . F 5 HOH A 26 407 407 HOH HOH . F 5 HOH A 27 408 408 HOH HOH . F 5 HOH A 28 409 409 HOH HOH . F 5 HOH A 29 410 410 HOH HOH . F 5 HOH A 30 411 411 HOH HOH . F 5 HOH A 31 412 412 HOH HOH . F 5 HOH A 32 413 413 HOH HOH . F 5 HOH A 33 414 414 HOH HOH . F 5 HOH A 34 415 415 HOH HOH . F 5 HOH A 35 416 416 HOH HOH . F 5 HOH A 36 417 417 HOH HOH . F 5 HOH A 37 418 418 HOH HOH . F 5 HOH A 38 419 419 HOH HOH . F 5 HOH A 39 420 420 HOH HOH . F 5 HOH A 40 421 421 HOH HOH . F 5 HOH A 41 422 422 HOH HOH . F 5 HOH A 42 423 423 HOH HOH . F 5 HOH A 43 424 424 HOH HOH . F 5 HOH A 44 425 425 HOH HOH . F 5 HOH A 45 426 426 HOH HOH . F 5 HOH A 46 427 427 HOH HOH . F 5 HOH A 47 428 428 HOH HOH . F 5 HOH A 48 429 429 HOH HOH . F 5 HOH A 49 430 430 HOH HOH . F 5 HOH A 50 431 431 HOH HOH . F 5 HOH A 51 432 432 HOH HOH . F 5 HOH A 52 433 433 HOH HOH . F 5 HOH A 53 434 434 HOH HOH . F 5 HOH A 54 435 435 HOH HOH . F 5 HOH A 55 436 436 HOH HOH . F 5 HOH A 56 437 437 HOH HOH . F 5 HOH A 57 438 438 HOH HOH . F 5 HOH A 58 439 439 HOH HOH . F 5 HOH A 59 440 440 HOH HOH . F 5 HOH A 60 441 441 HOH HOH . F 5 HOH A 61 442 442 HOH HOH . F 5 HOH A 62 443 443 HOH HOH . F 5 HOH A 63 444 444 HOH HOH . F 5 HOH A 64 445 445 HOH HOH . F 5 HOH A 65 446 446 HOH HOH . F 5 HOH A 66 447 447 HOH HOH . F 5 HOH A 67 448 448 HOH HOH . F 5 HOH A 68 449 449 HOH HOH . F 5 HOH A 69 450 450 HOH HOH . F 5 HOH A 70 451 451 HOH HOH . F 5 HOH A 71 452 452 HOH HOH . F 5 HOH A 72 453 453 HOH HOH . F 5 HOH A 73 454 454 HOH HOH . F 5 HOH A 74 455 455 HOH HOH . F 5 HOH A 75 456 456 HOH HOH . F 5 HOH A 76 457 457 HOH HOH . F 5 HOH A 77 458 458 HOH HOH . F 5 HOH A 78 459 459 HOH HOH . F 5 HOH A 79 460 460 HOH HOH . F 5 HOH A 80 461 461 HOH HOH . F 5 HOH A 81 462 462 HOH HOH . F 5 HOH A 82 463 463 HOH HOH . F 5 HOH A 83 464 464 HOH HOH . F 5 HOH A 84 465 465 HOH HOH . F 5 HOH A 85 466 466 HOH HOH . F 5 HOH A 86 467 467 HOH HOH . F 5 HOH A 87 468 468 HOH HOH . F 5 HOH A 88 469 469 HOH HOH . F 5 HOH A 89 470 470 HOH HOH . F 5 HOH A 90 471 471 HOH HOH . F 5 HOH A 91 472 472 HOH HOH . F 5 HOH A 92 473 473 HOH HOH . F 5 HOH A 93 474 474 HOH HOH . F 5 HOH A 94 475 475 HOH HOH . F 5 HOH A 95 476 476 HOH HOH . F 5 HOH A 96 477 477 HOH HOH . F 5 HOH A 97 478 478 HOH HOH . F 5 HOH A 98 479 479 HOH HOH . F 5 HOH A 99 480 480 HOH HOH . F 5 HOH A 100 481 481 HOH HOH . F 5 HOH A 101 482 482 HOH HOH . F 5 HOH A 102 483 483 HOH HOH . F 5 HOH A 103 484 484 HOH HOH . F 5 HOH A 104 485 485 HOH HOH . F 5 HOH A 105 486 486 HOH HOH . F 5 HOH A 106 487 487 HOH HOH . F 5 HOH A 107 488 488 HOH HOH . F 5 HOH A 108 489 489 HOH HOH . F 5 HOH A 109 490 490 HOH HOH . F 5 HOH A 110 491 491 HOH HOH . F 5 HOH A 111 492 492 HOH HOH . F 5 HOH A 112 493 493 HOH HOH . F 5 HOH A 113 494 494 HOH HOH . F 5 HOH A 114 495 495 HOH HOH . F 5 HOH A 115 496 496 HOH HOH . F 5 HOH A 116 497 497 HOH HOH . F 5 HOH A 117 498 498 HOH HOH . F 5 HOH A 118 499 499 HOH HOH . F 5 HOH A 119 500 500 HOH HOH . F 5 HOH A 120 501 501 HOH HOH . F 5 HOH A 121 502 502 HOH HOH . F 5 HOH A 122 503 503 HOH HOH . F 5 HOH A 123 504 504 HOH HOH . F 5 HOH A 124 505 505 HOH HOH . F 5 HOH A 125 506 506 HOH HOH . F 5 HOH A 126 507 507 HOH HOH . F 5 HOH A 127 508 508 HOH HOH . F 5 HOH A 128 509 509 HOH HOH . F 5 HOH A 129 510 510 HOH HOH . F 5 HOH A 130 511 511 HOH HOH . F 5 HOH A 131 512 512 HOH HOH . F 5 HOH A 132 513 513 HOH HOH . F 5 HOH A 133 514 514 HOH HOH . F 5 HOH A 134 515 515 HOH HOH . F 5 HOH A 135 516 516 HOH HOH . F 5 HOH A 136 517 517 HOH HOH . F 5 HOH A 137 518 518 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 B3N . . . E 4 51.999 -3.77 32.78 1 59.86 ? O23 B3N 381 A 1 HETATM 2 C C13 B3N . . . E 4 50.902 -4.126 33.193 1 58.81 ? C13 B3N 381 A 1 HETATM 3 C C14 B3N . . . E 4 50.226 -3.296 34.26 1 58.36 ? C14 B3N 381 A 1 HETATM 4 C C15 B3N . . . E 4 48.875 -3.471 34.559 1 57.62 ? C15 B3N 381 A 1 HETATM 5 C C16 B3N . . . E 4 48.271 -2.692 35.559 1 59.01 ? C16 B3N 381 A 1 HETATM 6 C C17 B3N . . . E 4 49.006 -1.736 36.275 1 58.67 ? C17 B3N 381 A 1 HETATM 7 N N20 B3N . . . E 4 48.405 -0.942 37.273 1 58.81 ? N20 B3N 381 A 1 HETATM 8 C C22 B3N . . . E 4 46.988 -1.032 37.595 1 58.44 ? C22 B3N 381 A 1 HETATM 9 C C21 B3N . . . E 4 49.207 0.036 37.994 1 58 ? C21 B3N 381 A 1 HETATM 10 C C18 B3N . . . E 4 50.365 -1.562 35.972 1 58.81 ? C18 B3N 381 A 1 HETATM 11 C C19 B3N . . . E 4 50.969 -2.344 34.976 1 59.5 ? C19 B3N 381 A 1 HETATM 12 N N12 B3N . . . E 4 50.307 -5.232 32.743 1 57.69 ? N12 B3N 381 A 1 HETATM 13 C C10 B3N . . . E 4 50.883 -6.143 31.765 1 59.42 ? C10 B3N 381 A 1 HETATM 14 C C9 B3N . . . E 4 50.413 -5.885 30.33 1 59.09 ? C9 B3N 381 A 1 HETATM 15 C C8 B3N . . . E 4 51.248 -4.78 29.676 1 58.47 ? C8 B3N 381 A 1 HETATM 16 C C7 B3N . . . E 4 50.818 -4.519 28.231 1 57.14 ? C7 B3N 381 A 1 HETATM 17 C C6 B3N . . . E 4 50.215 -3.139 28.025 1 55.63 ? C6 B3N 381 A 1 HETATM 18 C C5 B3N . . . E 4 49.705 -2.973 26.596 1 55.56 ? C5 B3N 381 A 1 HETATM 19 C C1 B3N . . . E 4 50.751 -2.236 25.779 1 55.25 ? C1 B3N 381 A 1 HETATM 20 O O2 B3N . . . E 4 51.128 -1.113 26.075 1 53.78 ? O2 B3N 381 A 1 HETATM 21 N N3 B3N . . . E 4 51.244 -2.867 24.724 1 54.93 ? N3 B3N 381 A 1 HETATM 22 O O4 B3N . . . E 4 52.222 -2.413 24.126 1 52.72 ? O4 B3N 381 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #