data_1T6B # _model_server_result.job_id hPkYfsGEBtqCB9NTqSiUFw _model_server_result.datetime_utc '2024-11-25 10:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 1T6B # _exptl.entry_id 1T6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T6B _cell.length_a 88.16 _cell.length_b 94.118 _cell.length_c 135.597 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T6B _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 177 X ASP 177 1_555 C CA CA . X CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OD1 ASP 179 X ASP 179 1_555 C CA CA . X CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A OD2 ASP 179 X ASP 179 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A OD1 ASP 181 X ASP 181 1_555 C CA CA . X CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A OD2 ASP 181 X ASP 181 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A O ILE 183 X ILE 183 1_555 C CA CA . X CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 A OE2 GLU 188 X GLU 188 1_555 C CA CA . X CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 A OE1 GLU 188 X GLU 188 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc9 A OE2 GLU 188 X GLU 188 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc10 A O SER 222 X SER 222 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 A O LYS 225 X LYS 225 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 A OD2 ASP 235 X ASP 235 1_555 D CA CA . X CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc13 A N ASP 244 X ASP 244 1_555 F NA NA . X NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc14 A N VAL 264 X VAL 264 1_555 E NA NA . X NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc15 A O LEU 450 X LEU 450 1_555 E NA NA . X NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc16 A OG1 THR 452 X THR 452 1_555 E NA NA . X NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc17 A OD2 ASP 683 X ASP 683 1_555 H MN MN . Y MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc18 F NA NA . X NA 803 1_555 I O HOH . X HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc19 B OG SER 23 Y SER 52 1_555 H MN MN . Y MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc20 B OG SER 25 Y SER 54 1_555 H MN MN . Y MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc21 B OG1 THR 89 Y THR 118 1_555 H MN MN . Y MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc22 H MN MN . Y MN 303 1_555 J O HOH . Y HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc23 H MN MN . Y MN 303 1_555 J O HOH . Y HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1T6B _atom_sites.fract_transf_matrix[1][1] 0.011343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA X 1 800 800 CA CA . D 3 CA X 1 801 801 CA CA . E 4 NA X 1 802 501 NA NA . F 4 NA X 1 803 502 NA NA . G 5 PG4 X 1 804 701 PG4 PG4 . H 6 MN Y 1 303 303 MN MN . I 7 HOH X 1 805 3 HOH HOH . I 7 HOH X 2 806 4 HOH HOH . I 7 HOH X 3 807 5 HOH HOH . I 7 HOH X 4 808 6 HOH HOH . I 7 HOH X 5 809 8 HOH HOH . I 7 HOH X 6 810 9 HOH HOH . I 7 HOH X 7 811 10 HOH HOH . I 7 HOH X 8 812 11 HOH HOH . I 7 HOH X 9 813 12 HOH HOH . I 7 HOH X 10 814 13 HOH HOH . I 7 HOH X 11 815 14 HOH HOH . I 7 HOH X 12 816 15 HOH HOH . I 7 HOH X 13 817 16 HOH HOH . I 7 HOH X 14 818 17 HOH HOH . I 7 HOH X 15 819 18 HOH HOH . I 7 HOH X 16 820 19 HOH HOH . I 7 HOH X 17 821 20 HOH HOH . I 7 HOH X 18 822 21 HOH HOH . I 7 HOH X 19 823 22 HOH HOH . I 7 HOH X 20 824 23 HOH HOH . I 7 HOH X 21 825 24 HOH HOH . I 7 HOH X 22 826 26 HOH HOH . I 7 HOH X 23 827 27 HOH HOH . I 7 HOH X 24 828 28 HOH HOH . I 7 HOH X 25 829 29 HOH HOH . I 7 HOH X 26 830 30 HOH HOH . I 7 HOH X 27 831 31 HOH HOH . I 7 HOH X 28 832 32 HOH HOH . I 7 HOH X 29 833 33 HOH HOH . I 7 HOH X 30 834 34 HOH HOH . I 7 HOH X 31 835 35 HOH HOH . I 7 HOH X 32 836 36 HOH HOH . I 7 HOH X 33 837 37 HOH HOH . I 7 HOH X 34 838 38 HOH HOH . I 7 HOH X 35 839 39 HOH HOH . I 7 HOH X 36 840 40 HOH HOH . I 7 HOH X 37 841 41 HOH HOH . I 7 HOH X 38 842 42 HOH HOH . I 7 HOH X 39 843 43 HOH HOH . I 7 HOH X 40 844 44 HOH HOH . I 7 HOH X 41 845 45 HOH HOH . I 7 HOH X 42 846 47 HOH HOH . I 7 HOH X 43 847 48 HOH HOH . I 7 HOH X 44 848 49 HOH HOH . I 7 HOH X 45 849 50 HOH HOH . I 7 HOH X 46 850 51 HOH HOH . I 7 HOH X 47 851 52 HOH HOH . I 7 HOH X 48 852 53 HOH HOH . I 7 HOH X 49 853 54 HOH HOH . I 7 HOH X 50 854 55 HOH HOH . I 7 HOH X 51 855 56 HOH HOH . I 7 HOH X 52 856 57 HOH HOH . I 7 HOH X 53 857 59 HOH HOH . I 7 HOH X 54 858 61 HOH HOH . I 7 HOH X 55 859 62 HOH HOH . I 7 HOH X 56 860 63 HOH HOH . I 7 HOH X 57 861 64 HOH HOH . I 7 HOH X 58 862 65 HOH HOH . I 7 HOH X 59 863 66 HOH HOH . I 7 HOH X 60 864 67 HOH HOH . I 7 HOH X 61 865 68 HOH HOH . I 7 HOH X 62 866 69 HOH HOH . I 7 HOH X 63 867 70 HOH HOH . I 7 HOH X 64 868 71 HOH HOH . I 7 HOH X 65 869 72 HOH HOH . I 7 HOH X 66 870 73 HOH HOH . I 7 HOH X 67 871 74 HOH HOH . I 7 HOH X 68 872 76 HOH HOH . I 7 HOH X 69 873 77 HOH HOH . I 7 HOH X 70 874 78 HOH HOH . I 7 HOH X 71 875 79 HOH HOH . I 7 HOH X 72 876 80 HOH HOH . I 7 HOH X 73 877 81 HOH HOH . I 7 HOH X 74 878 82 HOH HOH . I 7 HOH X 75 879 83 HOH HOH . I 7 HOH X 76 880 84 HOH HOH . I 7 HOH X 77 881 85 HOH HOH . I 7 HOH X 78 882 86 HOH HOH . I 7 HOH X 79 883 87 HOH HOH . I 7 HOH X 80 884 88 HOH HOH . I 7 HOH X 81 885 90 HOH HOH . I 7 HOH X 82 886 91 HOH HOH . I 7 HOH X 83 887 93 HOH HOH . I 7 HOH X 84 888 94 HOH HOH . I 7 HOH X 85 889 96 HOH HOH . I 7 HOH X 86 890 97 HOH HOH . I 7 HOH X 87 891 98 HOH HOH . I 7 HOH X 88 892 99 HOH HOH . I 7 HOH X 89 893 100 HOH HOH . I 7 HOH X 90 894 101 HOH HOH . I 7 HOH X 91 895 103 HOH HOH . I 7 HOH X 92 896 104 HOH HOH . I 7 HOH X 93 897 105 HOH HOH . I 7 HOH X 94 898 106 HOH HOH . I 7 HOH X 95 899 107 HOH HOH . I 7 HOH X 96 900 108 HOH HOH . I 7 HOH X 97 901 110 HOH HOH . I 7 HOH X 98 902 112 HOH HOH . I 7 HOH X 99 903 113 HOH HOH . I 7 HOH X 100 904 114 HOH HOH . I 7 HOH X 101 905 115 HOH HOH . I 7 HOH X 102 906 116 HOH HOH . I 7 HOH X 103 907 117 HOH HOH . I 7 HOH X 104 908 118 HOH HOH . I 7 HOH X 105 909 119 HOH HOH . I 7 HOH X 106 910 120 HOH HOH . I 7 HOH X 107 911 121 HOH HOH . I 7 HOH X 108 912 122 HOH HOH . I 7 HOH X 109 913 125 HOH HOH . I 7 HOH X 110 914 126 HOH HOH . I 7 HOH X 111 915 127 HOH HOH . I 7 HOH X 112 916 128 HOH HOH . I 7 HOH X 113 917 129 HOH HOH . I 7 HOH X 114 918 131 HOH HOH . I 7 HOH X 115 919 133 HOH HOH . I 7 HOH X 116 920 135 HOH HOH . I 7 HOH X 117 921 136 HOH HOH . I 7 HOH X 118 922 138 HOH HOH . I 7 HOH X 119 923 139 HOH HOH . J 7 HOH Y 1 401 401 HOH HOH . J 7 HOH Y 2 402 402 HOH HOH . J 7 HOH Y 3 403 7 HOH HOH . J 7 HOH Y 4 404 25 HOH HOH . J 7 HOH Y 5 405 46 HOH HOH . J 7 HOH Y 6 406 58 HOH HOH . J 7 HOH Y 7 407 60 HOH HOH . J 7 HOH Y 8 408 75 HOH HOH . J 7 HOH Y 9 409 89 HOH HOH . J 7 HOH Y 10 410 92 HOH HOH . J 7 HOH Y 11 411 95 HOH HOH . J 7 HOH Y 12 412 102 HOH HOH . J 7 HOH Y 13 413 109 HOH HOH . J 7 HOH Y 14 414 111 HOH HOH . J 7 HOH Y 15 415 123 HOH HOH . J 7 HOH Y 16 416 124 HOH HOH . J 7 HOH Y 17 417 130 HOH HOH . J 7 HOH Y 18 418 132 HOH HOH . J 7 HOH Y 19 419 134 HOH HOH . J 7 HOH Y 20 420 137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 17.141 _atom_site.Cartn_y 10.246 _atom_site.Cartn_z 4.979 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id Y _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #