data_1T6Y # _model_server_result.job_id cv5IfFtWVd7NSpNJKthyMA _model_server_result.datetime_utc '2025-02-27 11:10:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":294}' # _entry.id 1T6Y # _exptl.entry_id 1T6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 1T6Y _cell.length_a 67.803 _cell.length_b 82.661 _cell.length_c 66.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T6Y _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1T6Y _atom_sites.fract_transf_matrix[1][1] 0.014749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 294 294 ADP ADP . D 3 AMP A 1 295 295 AMP AMP . E 4 FMN A 1 296 296 FMN FMN . F 2 ADP B 1 594 594 ADP ADP . G 3 AMP B 1 595 595 AMP AMP . H 4 FMN B 1 596 596 FMN FMN . I 5 HOH A 1 601 601 HOH HOH . I 5 HOH A 2 602 602 HOH HOH . I 5 HOH A 3 603 603 HOH HOH . I 5 HOH A 4 608 608 HOH HOH . I 5 HOH A 5 609 609 HOH HOH . I 5 HOH A 6 610 610 HOH HOH . I 5 HOH A 7 611 611 HOH HOH . I 5 HOH A 8 617 617 HOH HOH . I 5 HOH A 9 619 619 HOH HOH . I 5 HOH A 10 621 621 HOH HOH . I 5 HOH A 11 622 622 HOH HOH . I 5 HOH A 12 623 623 HOH HOH . I 5 HOH A 13 624 624 HOH HOH . I 5 HOH A 14 625 625 HOH HOH . I 5 HOH A 15 627 627 HOH HOH . I 5 HOH A 16 628 628 HOH HOH . I 5 HOH A 17 630 630 HOH HOH . I 5 HOH A 18 631 631 HOH HOH . J 5 HOH B 1 604 604 HOH HOH . J 5 HOH B 2 605 605 HOH HOH . J 5 HOH B 3 606 606 HOH HOH . J 5 HOH B 4 607 607 HOH HOH . J 5 HOH B 5 612 612 HOH HOH . J 5 HOH B 6 613 613 HOH HOH . J 5 HOH B 7 614 614 HOH HOH . J 5 HOH B 8 615 615 HOH HOH . J 5 HOH B 9 616 616 HOH HOH . J 5 HOH B 10 618 618 HOH HOH . J 5 HOH B 11 620 620 HOH HOH . J 5 HOH B 12 626 626 HOH HOH . J 5 HOH B 13 629 629 HOH HOH . J 5 HOH B 14 632 632 HOH HOH . J 5 HOH B 15 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 41.764 2.497 19.348 1 148.49 ? PB ADP 294 A 1 HETATM 2 O O1B ADP . . . C 2 40.816 1.67 18.573 1 147.83 ? O1B ADP 294 A 1 HETATM 3 O O2B ADP . . . C 2 41.327 4.045 19.343 1 148.23 ? O2B ADP 294 A 1 HETATM 4 O O3B ADP . . . C 2 41.841 2.003 20.757 1 148.77 ? O3B ADP 294 A 1 HETATM 5 P PA ADP . . . C 2 44.054 3.576 17.923 1 144.3 ? PA ADP 294 A 1 HETATM 6 O O1A ADP . . . C 2 44.049 4.785 18.742 1 144.96 ? O1A ADP 294 A 1 HETATM 7 O O2A ADP . . . C 2 45.425 3.139 17.707 1 143.6 ? O2A ADP 294 A 1 HETATM 8 O O3A ADP . . . C 2 43.188 2.465 18.678 1 146.57 ? O3A ADP 294 A 1 HETATM 9 O O5' ADP . . . C 2 43.479 3.853 16.462 1 141.33 ? O5' ADP 294 A 1 HETATM 10 C C5' ADP . . . C 2 42.364 3.302 15.731 1 135.07 ? C5' ADP 294 A 1 HETATM 11 C C4' ADP . . . C 2 42.431 4.054 14.345 1 130.51 ? C4' ADP 294 A 1 HETATM 12 O O4' ADP . . . C 2 43.456 3.482 13.508 1 127.6 ? O4' ADP 294 A 1 HETATM 13 C C3' ADP . . . C 2 41.166 4.04 13.486 1 128.34 ? C3' ADP 294 A 1 HETATM 14 O O3' ADP . . . C 2 40.433 5.249 13.668 1 127.85 ? O3' ADP 294 A 1 HETATM 15 C C2' ADP . . . C 2 41.61 3.83 12.027 1 126.57 ? C2' ADP 294 A 1 HETATM 16 O O2' ADP . . . C 2 41.596 5.024 11.218 1 126.32 ? O2' ADP 294 A 1 HETATM 17 C C1' ADP . . . C 2 42.971 3.199 12.17 1 124.98 ? C1' ADP 294 A 1 HETATM 18 N N9 ADP . . . C 2 42.994 1.708 11.845 1 121.87 ? N9 ADP 294 A 1 HETATM 19 C C8 ADP . . . C 2 43.966 1.173 11.07 1 120.59 ? C8 ADP 294 A 1 HETATM 20 N N7 ADP . . . C 2 43.77 -0.118 10.913 1 118.63 ? N7 ADP 294 A 1 HETATM 21 C C5 ADP . . . C 2 42.694 -0.456 11.562 1 118.88 ? C5 ADP 294 A 1 HETATM 22 C C6 ADP . . . C 2 41.991 -1.654 11.762 1 118.36 ? C6 ADP 294 A 1 HETATM 23 N N6 ADP . . . C 2 42.427 -2.781 11.199 1 118.06 ? N6 ADP 294 A 1 HETATM 24 N N1 ADP . . . C 2 40.838 -1.675 12.539 1 118.12 ? N1 ADP 294 A 1 HETATM 25 C C2 ADP . . . C 2 40.344 -0.541 13.136 1 118.78 ? C2 ADP 294 A 1 HETATM 26 N N3 ADP . . . C 2 41.017 0.641 12.948 1 119.32 ? N3 ADP 294 A 1 HETATM 27 C C4 ADP . . . C 2 42.173 0.728 12.187 1 120.07 ? C4 ADP 294 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #