data_1T6Y # _model_server_result.job_id nO6cC-Nrjf4RrYeu2uaP-w _model_server_result.datetime_utc '2025-02-27 11:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":295}' # _entry.id 1T6Y # _exptl.entry_id 1T6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 1T6Y _cell.length_a 67.803 _cell.length_b 82.661 _cell.length_c 66.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T6Y _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 1T6Y _atom_sites.fract_transf_matrix[1][1] 0.014749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 294 294 ADP ADP . D 3 AMP A 1 295 295 AMP AMP . E 4 FMN A 1 296 296 FMN FMN . F 2 ADP B 1 594 594 ADP ADP . G 3 AMP B 1 595 595 AMP AMP . H 4 FMN B 1 596 596 FMN FMN . I 5 HOH A 1 601 601 HOH HOH . I 5 HOH A 2 602 602 HOH HOH . I 5 HOH A 3 603 603 HOH HOH . I 5 HOH A 4 608 608 HOH HOH . I 5 HOH A 5 609 609 HOH HOH . I 5 HOH A 6 610 610 HOH HOH . I 5 HOH A 7 611 611 HOH HOH . I 5 HOH A 8 617 617 HOH HOH . I 5 HOH A 9 619 619 HOH HOH . I 5 HOH A 10 621 621 HOH HOH . I 5 HOH A 11 622 622 HOH HOH . I 5 HOH A 12 623 623 HOH HOH . I 5 HOH A 13 624 624 HOH HOH . I 5 HOH A 14 625 625 HOH HOH . I 5 HOH A 15 627 627 HOH HOH . I 5 HOH A 16 628 628 HOH HOH . I 5 HOH A 17 630 630 HOH HOH . I 5 HOH A 18 631 631 HOH HOH . J 5 HOH B 1 604 604 HOH HOH . J 5 HOH B 2 605 605 HOH HOH . J 5 HOH B 3 606 606 HOH HOH . J 5 HOH B 4 607 607 HOH HOH . J 5 HOH B 5 612 612 HOH HOH . J 5 HOH B 6 613 613 HOH HOH . J 5 HOH B 7 614 614 HOH HOH . J 5 HOH B 8 615 615 HOH HOH . J 5 HOH B 9 616 616 HOH HOH . J 5 HOH B 10 618 618 HOH HOH . J 5 HOH B 11 620 620 HOH HOH . J 5 HOH B 12 626 626 HOH HOH . J 5 HOH B 13 629 629 HOH HOH . J 5 HOH B 14 632 632 HOH HOH . J 5 HOH B 15 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 3 4.675 2.291 11.578 1 74.08 ? P AMP 295 A 1 HETATM 2 O O1P AMP . . . D 3 4.747 3.628 12.172 1 78.11 ? O1P AMP 295 A 1 HETATM 3 O O2P AMP . . . D 3 3.693 1.39 12.259 1 72.52 ? O2P AMP 295 A 1 HETATM 4 O O3P AMP . . . D 3 6.051 1.651 11.464 1 73.28 ? O3P AMP 295 A 1 HETATM 5 O O5' AMP . . . D 3 4.172 2.561 10.042 1 75.95 ? O5' AMP 295 A 1 HETATM 6 C C5' AMP . . . D 3 4.03 1.361 9.306 1 75.46 ? C5' AMP 295 A 1 HETATM 7 C C4' AMP . . . D 3 2.776 1.389 8.422 1 73.67 ? C4' AMP 295 A 1 HETATM 8 O O4' AMP . . . D 3 2.843 0.02 7.949 1 73.73 ? O4' AMP 295 A 1 HETATM 9 C C3' AMP . . . D 3 1.431 1.576 9.329 1 72.55 ? C3' AMP 295 A 1 HETATM 10 O O3' AMP . . . D 3 0.443 2.105 8.316 1 74.06 ? O3' AMP 295 A 1 HETATM 11 C C2' AMP . . . D 3 1.178 0.094 9.731 1 73.14 ? C2' AMP 295 A 1 HETATM 12 O O2' AMP . . . D 3 -0.16 -0.237 9.874 1 73.8 ? O2' AMP 295 A 1 HETATM 13 C C1' AMP . . . D 3 1.803 -0.778 8.544 1 75.37 ? C1' AMP 295 A 1 HETATM 14 N N9 AMP . . . D 3 2.455 -1.945 9.148 1 80.41 ? N9 AMP 295 A 1 HETATM 15 C C8 AMP . . . D 3 3.576 -1.968 10.008 1 80.15 ? C8 AMP 295 A 1 HETATM 16 N N7 AMP . . . D 3 4.002 -3.158 10.437 1 82.55 ? N7 AMP 295 A 1 HETATM 17 C C5 AMP . . . D 3 3.064 -3.958 9.789 1 83.91 ? C5 AMP 295 A 1 HETATM 18 C C6 AMP . . . D 3 2.902 -5.354 9.785 1 84.8 ? C6 AMP 295 A 1 HETATM 19 N N6 AMP . . . D 3 3.779 -6.118 10.517 1 85.2 ? N6 AMP 295 A 1 HETATM 20 N N1 AMP . . . D 3 1.839 -5.843 9.013 1 86.9 ? N1 AMP 295 A 1 HETATM 21 C C2 AMP . . . D 3 1.004 -5.049 8.307 1 86.44 ? C2 AMP 295 A 1 HETATM 22 N N3 AMP . . . D 3 1.086 -3.71 8.255 1 86.25 ? N3 AMP 295 A 1 HETATM 23 C C4 AMP . . . D 3 2.119 -3.235 9.005 1 83.53 ? C4 AMP 295 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 23 #