data_1T6Y # _model_server_result.job_id BGYRjrKcXQZcMZ8OmwQBGw _model_server_result.datetime_utc '2024-11-29 13:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":596}' # _entry.id 1T6Y # _exptl.entry_id 1T6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 1T6Y _cell.length_a 67.803 _cell.length_b 82.661 _cell.length_c 66.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T6Y _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 153 n n N1 C10 FMN doub 154 n n C2 O2 FMN doub 155 n n C2 N3 FMN sing 156 n n N3 C4 FMN sing 157 n n N3 HN3 FMN sing 158 n n C4 O4 FMN doub 159 n n C4 C4A FMN sing 160 n n C4A N5 FMN doub 161 n n C4A C10 FMN sing 162 n n N5 C5A FMN sing 163 n n C5A C6 FMN doub 164 n y C5A C9A FMN sing 165 n y C6 C7 FMN sing 166 n y C6 H6 FMN sing 167 n n C7 C7M FMN sing 168 n n C7 C8 FMN doub 169 n y C7M HM71 FMN sing 170 n n C7M HM72 FMN sing 171 n n C7M HM73 FMN sing 172 n n C8 C8M FMN sing 173 n n C8 C9 FMN sing 174 n y C8M HM81 FMN sing 175 n n C8M HM82 FMN sing 176 n n C8M HM83 FMN sing 177 n n C9 C9A FMN doub 178 n y C9 H9 FMN sing 179 n n C9A N10 FMN sing 180 n n N10 C10 FMN sing 181 n n N10 C1' FMN sing 182 n n C1' C2' FMN sing 183 n n C1' "H1'1" FMN sing 184 n n C1' "H1'2" FMN sing 185 n n C2' O2' FMN sing 186 n n C2' C3' FMN sing 187 n n C2' H2' FMN sing 188 n n O2' HO2' FMN sing 189 n n C3' O3' FMN sing 190 n n C3' C4' FMN sing 191 n n C3' H3' FMN sing 192 n n O3' HO3' FMN sing 193 n n C4' O4' FMN sing 194 n n C4' C5' FMN sing 195 n n C4' H4' FMN sing 196 n n O4' HO4' FMN sing 197 n n C5' O5' FMN sing 198 n n C5' "H5'1" FMN sing 199 n n C5' "H5'2" FMN sing 200 n n O5' P FMN sing 201 n n P O1P FMN doub 202 n n P O2P FMN sing 203 n n P O3P FMN sing 204 n n O2P HOP2 FMN sing 205 n n O3P HOP3 FMN sing 206 n n # _atom_sites.entry_id 1T6Y _atom_sites.fract_transf_matrix[1][1] 0.014749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 294 294 ADP ADP . D 3 AMP A 1 295 295 AMP AMP . E 4 FMN A 1 296 296 FMN FMN . F 2 ADP B 1 594 594 ADP ADP . G 3 AMP B 1 595 595 AMP AMP . H 4 FMN B 1 596 596 FMN FMN . I 5 HOH A 1 601 601 HOH HOH . I 5 HOH A 2 602 602 HOH HOH . I 5 HOH A 3 603 603 HOH HOH . I 5 HOH A 4 608 608 HOH HOH . I 5 HOH A 5 609 609 HOH HOH . I 5 HOH A 6 610 610 HOH HOH . I 5 HOH A 7 611 611 HOH HOH . I 5 HOH A 8 617 617 HOH HOH . I 5 HOH A 9 619 619 HOH HOH . I 5 HOH A 10 621 621 HOH HOH . I 5 HOH A 11 622 622 HOH HOH . I 5 HOH A 12 623 623 HOH HOH . I 5 HOH A 13 624 624 HOH HOH . I 5 HOH A 14 625 625 HOH HOH . I 5 HOH A 15 627 627 HOH HOH . I 5 HOH A 16 628 628 HOH HOH . I 5 HOH A 17 630 630 HOH HOH . I 5 HOH A 18 631 631 HOH HOH . J 5 HOH B 1 604 604 HOH HOH . J 5 HOH B 2 605 605 HOH HOH . J 5 HOH B 3 606 606 HOH HOH . J 5 HOH B 4 607 607 HOH HOH . J 5 HOH B 5 612 612 HOH HOH . J 5 HOH B 6 613 613 HOH HOH . J 5 HOH B 7 614 614 HOH HOH . J 5 HOH B 8 615 615 HOH HOH . J 5 HOH B 9 616 616 HOH HOH . J 5 HOH B 10 618 618 HOH HOH . J 5 HOH B 11 620 620 HOH HOH . J 5 HOH B 12 626 626 HOH HOH . J 5 HOH B 13 629 629 HOH HOH . J 5 HOH B 14 632 632 HOH HOH . J 5 HOH B 15 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 4 -17.356 -2.494 36.751 1 65.57 ? N1 FMN 596 B 1 HETATM 2 C C2 FMN . . . H 4 -17.992 -2.05 37.856 1 65.34 ? C2 FMN 596 B 1 HETATM 3 O O2 FMN . . . H 4 -18.844 -2.624 38.53 1 66.16 ? O2 FMN 596 B 1 HETATM 4 N N3 FMN . . . H 4 -17.648 -0.708 38.366 1 64.47 ? N3 FMN 596 B 1 HETATM 5 C C4 FMN . . . H 4 -16.664 0.131 37.73 1 66.32 ? C4 FMN 596 B 1 HETATM 6 O O4 FMN . . . H 4 -16.488 1.239 38.279 1 66.65 ? O4 FMN 596 B 1 HETATM 7 C C4A FMN . . . H 4 -16.046 -0.397 36.607 1 65.92 ? C4A FMN 596 B 1 HETATM 8 N N5 FMN . . . H 4 -15.146 0.331 36.008 1 64.62 ? N5 FMN 596 B 1 HETATM 9 C C5A FMN . . . H 4 -14.485 -0.158 34.855 1 64.19 ? C5A FMN 596 B 1 HETATM 10 C C6 FMN . . . H 4 -13.498 0.595 34.163 1 62.96 ? C6 FMN 596 B 1 HETATM 11 C C7 FMN . . . H 4 -12.849 0.044 32.985 1 62.58 ? C7 FMN 596 B 1 HETATM 12 C C7M FMN . . . H 4 -11.845 1.056 32.443 1 59.11 ? C7M FMN 596 B 1 HETATM 13 C C8 FMN . . . H 4 -13.206 -1.294 32.506 1 64.74 ? C8 FMN 596 B 1 HETATM 14 C C8M FMN . . . H 4 -12.517 -1.822 31.309 1 64.63 ? C8M FMN 596 B 1 HETATM 15 C C9 FMN . . . H 4 -14.18 -2.042 33.173 1 65.56 ? C9 FMN 596 B 1 HETATM 16 C C9A FMN . . . H 4 -14.874 -1.525 34.379 1 66.87 ? C9A FMN 596 B 1 HETATM 17 N N10 FMN . . . H 4 -15.835 -2.33 34.986 1 70.21 ? N10 FMN 596 B 1 HETATM 18 C C10 FMN . . . H 4 -16.425 -1.8 36.086 1 66.77 ? C10 FMN 596 B 1 HETATM 19 C C1' FMN . . . H 4 -16.294 -3.652 34.584 1 82.73 ? C1' FMN 596 B 1 HETATM 20 C C2' FMN . . . H 4 -16.039 -4.823 35.483 1 94.05 ? C2' FMN 596 B 1 HETATM 21 O O2' FMN . . . H 4 -14.645 -4.952 35.649 1 94 ? O2' FMN 596 B 1 HETATM 22 C C3' FMN . . . H 4 -16.694 -5.969 34.721 1 102.57 ? C3' FMN 596 B 1 HETATM 23 O O3' FMN . . . H 4 -17.994 -6.288 35.338 1 103.89 ? O3' FMN 596 B 1 HETATM 24 C C4' FMN . . . H 4 -15.966 -7.363 34.607 1 108.7 ? C4' FMN 596 B 1 HETATM 25 O O4' FMN . . . H 4 -16.745 -8.292 33.869 1 108.97 ? O4' FMN 596 B 1 HETATM 26 C C5' FMN . . . H 4 -15.469 -8.055 35.93 1 114.74 ? C5' FMN 596 B 1 HETATM 27 O O5' FMN . . . H 4 -16.449 -7.847 36.982 1 123.18 ? O5' FMN 596 B 1 HETATM 28 P P FMN . . . H 4 -17.285 -9.113 37.406 1 127.88 ? P FMN 596 B 1 HETATM 29 O O1P FMN . . . H 4 -18.226 -8.588 38.545 1 127.66 ? O1P FMN 596 B 1 HETATM 30 O O2P FMN . . . H 4 -18.09 -9.573 36.219 1 128.02 ? O2P FMN 596 B 1 HETATM 31 O O3P FMN . . . H 4 -16.318 -10.192 37.944 1 128.24 ? O3P FMN 596 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #