data_1T80 # _model_server_result.job_id Gz3UsSAJagOrqyLlyflBow _model_server_result.datetime_utc '2024-11-29 15:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":310}' # _entry.id 1T80 # _exptl.entry_id 1T80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T80 _cell.length_a 122.545 _cell.length_b 122.545 _cell.length_c 65.445 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG 3 320 NAG 2 n B NAG 2 B 2 NAG 4 321 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 205 A CYS 205 1_555 A SG CYS 260 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 108 A ASN 108 1_555 C C1 NAG . A NAG 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 239 A ASN 239 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1T80 _atom_sites.fract_transf_matrix[1][1] 0.00816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 310 310 NAG NAG . D 4 HOH A 1 322 1 HOH TIP . D 4 HOH A 2 323 2 HOH TIP . D 4 HOH A 3 324 3 HOH TIP . D 4 HOH A 4 325 4 HOH TIP . D 4 HOH A 5 326 5 HOH TIP . D 4 HOH A 6 327 6 HOH TIP . D 4 HOH A 7 328 7 HOH TIP . D 4 HOH A 8 329 8 HOH TIP . D 4 HOH A 9 330 9 HOH TIP . D 4 HOH A 10 331 10 HOH TIP . D 4 HOH A 11 332 11 HOH TIP . D 4 HOH A 12 333 12 HOH TIP . D 4 HOH A 13 334 13 HOH TIP . D 4 HOH A 14 335 14 HOH TIP . D 4 HOH A 15 336 15 HOH TIP . D 4 HOH A 16 337 16 HOH TIP . D 4 HOH A 17 338 17 HOH TIP . D 4 HOH A 18 339 18 HOH TIP . D 4 HOH A 19 340 19 HOH TIP . D 4 HOH A 20 341 20 HOH TIP . D 4 HOH A 21 342 21 HOH TIP . D 4 HOH A 22 343 22 HOH TIP . D 4 HOH A 23 344 23 HOH TIP . D 4 HOH A 24 345 24 HOH TIP . D 4 HOH A 25 346 25 HOH TIP . D 4 HOH A 26 347 26 HOH TIP . D 4 HOH A 27 348 27 HOH TIP . D 4 HOH A 28 349 28 HOH TIP . D 4 HOH A 29 350 29 HOH TIP . D 4 HOH A 30 351 30 HOH TIP . D 4 HOH A 31 352 31 HOH TIP . D 4 HOH A 32 353 32 HOH TIP . D 4 HOH A 33 354 33 HOH TIP . D 4 HOH A 34 355 34 HOH TIP . D 4 HOH A 35 356 35 HOH TIP . D 4 HOH A 36 357 36 HOH TIP . D 4 HOH A 37 358 37 HOH TIP . D 4 HOH A 38 359 38 HOH TIP . D 4 HOH A 39 360 39 HOH TIP . D 4 HOH A 40 361 40 HOH TIP . D 4 HOH A 41 362 41 HOH TIP . D 4 HOH A 42 363 42 HOH TIP . D 4 HOH A 43 364 43 HOH TIP . D 4 HOH A 44 365 44 HOH TIP . D 4 HOH A 45 366 45 HOH TIP . D 4 HOH A 46 367 46 HOH TIP . D 4 HOH A 47 368 47 HOH TIP . D 4 HOH A 48 369 48 HOH TIP . D 4 HOH A 49 370 49 HOH TIP . D 4 HOH A 50 371 50 HOH TIP . D 4 HOH A 51 372 51 HOH TIP . D 4 HOH A 52 373 52 HOH TIP . D 4 HOH A 53 374 53 HOH TIP . D 4 HOH A 54 375 54 HOH TIP . D 4 HOH A 55 376 55 HOH TIP . D 4 HOH A 56 377 56 HOH TIP . D 4 HOH A 57 378 57 HOH TIP . D 4 HOH A 58 379 58 HOH TIP . D 4 HOH A 59 380 59 HOH TIP . D 4 HOH A 60 381 60 HOH TIP . D 4 HOH A 61 382 61 HOH TIP . D 4 HOH A 62 383 62 HOH TIP . D 4 HOH A 63 384 63 HOH TIP . D 4 HOH A 64 385 64 HOH TIP . D 4 HOH A 65 386 65 HOH TIP . D 4 HOH A 66 387 66 HOH TIP . D 4 HOH A 67 388 67 HOH TIP . D 4 HOH A 68 389 68 HOH TIP . D 4 HOH A 69 390 69 HOH TIP . D 4 HOH A 70 391 70 HOH TIP . D 4 HOH A 71 392 71 HOH TIP . D 4 HOH A 72 393 72 HOH TIP . D 4 HOH A 73 394 73 HOH TIP . D 4 HOH A 74 395 74 HOH TIP . D 4 HOH A 75 396 75 HOH TIP . D 4 HOH A 76 397 76 HOH TIP . D 4 HOH A 77 398 77 HOH TIP . D 4 HOH A 78 399 78 HOH TIP . D 4 HOH A 79 400 79 HOH TIP . D 4 HOH A 80 401 80 HOH TIP . D 4 HOH A 81 402 81 HOH TIP . D 4 HOH A 82 403 82 HOH TIP . D 4 HOH A 83 404 83 HOH TIP . D 4 HOH A 84 405 84 HOH TIP . D 4 HOH A 85 406 85 HOH TIP . D 4 HOH A 86 407 86 HOH TIP . D 4 HOH A 87 408 87 HOH TIP . D 4 HOH A 88 409 88 HOH TIP . D 4 HOH A 89 410 89 HOH TIP . D 4 HOH A 90 411 90 HOH TIP . D 4 HOH A 91 412 91 HOH TIP . D 4 HOH A 92 413 92 HOH TIP . D 4 HOH A 93 414 93 HOH TIP . D 4 HOH A 94 415 94 HOH TIP . D 4 HOH A 95 416 95 HOH TIP . D 4 HOH A 96 417 96 HOH TIP . D 4 HOH A 97 418 97 HOH TIP . D 4 HOH A 98 419 98 HOH TIP . D 4 HOH A 99 420 99 HOH TIP . D 4 HOH A 100 421 100 HOH TIP . D 4 HOH A 101 422 101 HOH TIP . D 4 HOH A 102 423 102 HOH TIP . D 4 HOH A 103 424 103 HOH TIP . D 4 HOH A 104 425 104 HOH TIP . D 4 HOH A 105 426 105 HOH TIP . D 4 HOH A 106 427 106 HOH TIP . D 4 HOH A 107 428 107 HOH TIP . D 4 HOH A 108 429 108 HOH TIP . D 4 HOH A 109 430 109 HOH TIP . D 4 HOH A 110 431 110 HOH TIP . D 4 HOH A 111 432 111 HOH TIP . D 4 HOH A 112 433 112 HOH TIP . D 4 HOH A 113 434 113 HOH TIP . D 4 HOH A 114 435 114 HOH TIP . D 4 HOH A 115 436 115 HOH TIP . D 4 HOH A 116 437 116 HOH TIP . D 4 HOH A 117 438 117 HOH TIP . D 4 HOH A 118 439 118 HOH TIP . D 4 HOH A 119 440 119 HOH TIP . D 4 HOH A 120 441 120 HOH TIP . D 4 HOH A 121 442 121 HOH TIP . D 4 HOH A 122 443 122 HOH TIP . D 4 HOH A 123 444 123 HOH TIP . D 4 HOH A 124 445 124 HOH TIP . D 4 HOH A 125 446 125 HOH TIP . D 4 HOH A 126 447 126 HOH TIP . D 4 HOH A 127 448 127 HOH TIP . D 4 HOH A 128 449 128 HOH TIP . D 4 HOH A 129 450 129 HOH TIP . D 4 HOH A 130 451 130 HOH TIP . D 4 HOH A 131 452 131 HOH TIP . D 4 HOH A 132 453 132 HOH TIP . D 4 HOH A 133 454 133 HOH TIP . D 4 HOH A 134 455 134 HOH TIP . D 4 HOH A 135 456 135 HOH TIP . D 4 HOH A 136 457 136 HOH TIP . D 4 HOH A 137 458 137 HOH TIP . D 4 HOH A 138 459 138 HOH TIP . D 4 HOH A 139 460 139 HOH TIP . D 4 HOH A 140 461 140 HOH TIP . D 4 HOH A 141 462 141 HOH TIP . D 4 HOH A 142 463 142 HOH TIP . D 4 HOH A 143 464 143 HOH TIP . D 4 HOH A 144 465 144 HOH TIP . D 4 HOH A 145 466 145 HOH TIP . D 4 HOH A 146 467 146 HOH TIP . D 4 HOH A 147 468 147 HOH TIP . D 4 HOH A 148 469 148 HOH TIP . D 4 HOH A 149 470 149 HOH TIP . D 4 HOH A 150 471 150 HOH TIP . D 4 HOH A 151 472 151 HOH TIP . D 4 HOH A 152 473 152 HOH TIP . D 4 HOH A 153 474 153 HOH TIP . D 4 HOH A 154 475 154 HOH TIP . D 4 HOH A 155 476 155 HOH TIP . D 4 HOH A 156 477 156 HOH TIP . D 4 HOH A 157 478 157 HOH TIP . D 4 HOH A 158 479 158 HOH TIP . D 4 HOH A 159 480 159 HOH TIP . D 4 HOH A 160 481 160 HOH TIP . D 4 HOH A 161 482 161 HOH TIP . D 4 HOH A 162 483 162 HOH TIP . D 4 HOH A 163 484 163 HOH TIP . D 4 HOH A 164 485 164 HOH TIP . D 4 HOH A 165 486 165 HOH TIP . D 4 HOH A 166 487 166 HOH TIP . D 4 HOH A 167 488 167 HOH TIP . D 4 HOH A 168 489 168 HOH TIP . D 4 HOH A 169 490 169 HOH TIP . D 4 HOH A 170 491 170 HOH TIP . D 4 HOH A 171 492 171 HOH TIP . D 4 HOH A 172 493 172 HOH TIP . D 4 HOH A 173 494 173 HOH TIP . D 4 HOH A 174 495 174 HOH TIP . D 4 HOH A 175 496 175 HOH TIP . D 4 HOH A 176 497 176 HOH TIP . D 4 HOH A 177 498 177 HOH TIP . D 4 HOH A 178 499 178 HOH TIP . D 4 HOH A 179 500 179 HOH TIP . D 4 HOH A 180 501 180 HOH TIP . D 4 HOH A 181 502 181 HOH TIP . D 4 HOH A 182 503 182 HOH TIP . D 4 HOH A 183 504 183 HOH TIP . D 4 HOH A 184 505 184 HOH TIP . D 4 HOH A 185 506 185 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 10.633 83.438 -0.02 1 81.38 ? C1 NAG 310 A 1 HETATM 2 C C2 NAG . . . C 3 9.626 84.494 0.455 1 81.37 ? C2 NAG 310 A 1 HETATM 3 C C3 NAG . . . C 3 9.389 85.533 -0.654 1 81.42 ? C3 NAG 310 A 1 HETATM 4 C C4 NAG . . . C 3 10.717 86.097 -1.167 1 81.82 ? C4 NAG 310 A 1 HETATM 5 C C5 NAG . . . C 3 11.645 84.944 -1.57 1 81.76 ? C5 NAG 310 A 1 HETATM 6 C C6 NAG . . . C 3 13.017 85.403 -2.023 1 82.25 ? C6 NAG 310 A 1 HETATM 7 C C7 NAG . . . C 3 7.405 83.721 -0.091 1 82.32 ? C7 NAG 310 A 1 HETATM 8 C C8 NAG . . . C 3 7.323 82.401 -0.842 1 81.9 ? C8 NAG 310 A 1 HETATM 9 N N2 NAG . . . C 3 8.373 83.855 0.812 1 81.27 ? N2 NAG 310 A 1 HETATM 10 O O3 NAG . . . C 3 8.578 86.591 -0.162 1 80.66 ? O3 NAG 310 A 1 HETATM 11 O O4 NAG . . . C 3 10.474 86.935 -2.288 1 82.36 ? O4 NAG 310 A 1 HETATM 12 O O5 NAG . . . C 3 11.848 84.064 -0.448 1 82.15 ? O5 NAG 310 A 1 HETATM 13 O O6 NAG . . . C 3 13.975 84.362 -1.879 1 81.12 ? O6 NAG 310 A 1 HETATM 14 O O7 NAG . . . C 3 6.597 84.615 -0.336 1 82.93 ? O7 NAG 310 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #