data_1T83 # _model_server_result.job_id E-bevVF13t24loX-Ih7c9A _model_server_result.datetime_utc '2024-11-08 19:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":456}' # _entry.id 1T83 # _exptl.entry_id 1T83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.398 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIBROMOMERCURY _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1T83 _cell.length_a 73.846 _cell.length_b 102.385 _cell.length_c 123.069 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NDG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 5 GAL NDG C1 O1 . O4 HO4 . sing 6 ? 3 7 3 BMA BMA C1 O1 . O3 HO3 . sing 7 ? 3 8 1 FUL NAG C1 O1 . O6 HO6 . sing 8 ? 4 2 1 NDG NAG C1 O1 . O4 HO4 . sing 9 ? 4 3 2 BMA NDG C1 O1 . O4 HO4 . sing 10 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 11 ? 4 5 4 NAG MAN C1 O1 . O2 HO2 . sing 12 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing 13 ? 4 7 6 NAG MAN C1 O1 . O2 HO2 . sing 14 ? 4 8 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG ? 301 NAG 3 n D NAG 2 D 2 NAG ? 302 NAG 3 n D BMA 3 D 3 BMA ? 303 MAN 3 n D MAN 4 D 4 MAN ? 305 MAN 3 n D NDG 5 D 5 NDG ? 306 NAG 3 n D GAL 6 D 6 GAL ? 307 GAL 3 n D BMA 7 D 7 BMA ? 304 MAN 3 n D FUL 8 D 8 FUL ? 308 FUL 4 n E NAG 1 E 1 NAG ? 401 NAG 4 n E NDG 2 E 2 NDG ? 402 NAG 4 n E BMA 3 E 3 BMA ? 403 MAN 4 n E MAN 4 E 4 MAN ? 404 MAN 4 n E NAG 5 E 5 NAG ? 407 NAG 4 n E MAN 6 E 6 MAN ? 405 MAN 4 n E NAG 7 E 7 NAG ? 406 NAG 4 n E FUL 8 E 8 FUL ? 408 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 261 1_555 A SG CYS 98 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 144 A CYS 367 1_555 A SG CYS 202 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 38 B CYS 261 1_555 B SG CYS 98 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 144 B CYS 367 1_555 B SG CYS 202 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 29 C CYS 29 1_555 C SG CYS 71 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 110 C CYS 110 1_555 C SG CYS 154 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 74 A ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 74 B ASN 297 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale4 D O6 NAG . D NAG 1 1_555 D C1 FUL . D FUL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale6 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale7 D O3 BMA . D BMA 3 1_555 D C1 BMA . D BMA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale8 D O2 MAN . D MAN 4 1_555 D C1 NDG . D NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale9 D O4 NDG . D NDG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NDG . E NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale11 E O6 NAG . E NAG 1 1_555 E C1 FUL . E FUL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale12 E O4 NDG . E NDG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale13 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale14 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale15 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale16 E O2 MAN . E MAN 6 1_555 E C1 NAG . E NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? metalc ? metalc1 A SD MET 29 A MET 252 1_555 F HG HG2 . A HG2 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? # _chem_comp.formula 'Br2 Hg' _chem_comp.formula_weight 360.398 _chem_comp.id HG2 _chem_comp.mon_nstd_flag . _chem_comp.name DIBROMOMERCURY _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG BR1 HG2 sing 200 n n HG BR2 HG2 sing 201 n n # _atom_sites.entry_id 1T83 _atom_sites.fract_transf_matrix[1][1] 0.013542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 HG2 A 1 456 400 HG2 HG2 . G 6 HOH A 1 9 9 HOH HOH . G 6 HOH A 2 12 12 HOH HOH . G 6 HOH A 3 17 17 HOH HOH . G 6 HOH A 4 19 19 HOH HOH . G 6 HOH A 5 20 20 HOH HOH . G 6 HOH A 6 27 27 HOH HOH . G 6 HOH A 7 31 31 HOH HOH . G 6 HOH A 8 51 51 HOH HOH . G 6 HOH A 9 55 55 HOH HOH . G 6 HOH A 10 56 56 HOH HOH . G 6 HOH A 11 57 57 HOH HOH . G 6 HOH A 12 58 58 HOH HOH . G 6 HOH A 13 64 64 HOH HOH . G 6 HOH A 14 68 68 HOH HOH . G 6 HOH A 15 73 73 HOH HOH . G 6 HOH A 16 76 76 HOH HOH . G 6 HOH A 17 84 84 HOH HOH . G 6 HOH A 18 88 88 HOH HOH . G 6 HOH A 19 97 97 HOH HOH . G 6 HOH A 20 99 99 HOH HOH . G 6 HOH A 21 102 102 HOH HOH . G 6 HOH A 22 107 107 HOH HOH . G 6 HOH A 23 108 108 HOH HOH . G 6 HOH A 24 115 115 HOH HOH . G 6 HOH A 25 121 121 HOH HOH . G 6 HOH A 26 135 135 HOH HOH . G 6 HOH A 27 137 137 HOH HOH . G 6 HOH A 28 143 143 HOH HOH . G 6 HOH A 29 144 144 HOH HOH . G 6 HOH A 30 148 148 HOH HOH . G 6 HOH A 31 154 154 HOH HOH . G 6 HOH A 32 170 170 HOH HOH . G 6 HOH A 33 180 180 HOH HOH . G 6 HOH A 34 189 189 HOH HOH . G 6 HOH A 35 205 205 HOH HOH . G 6 HOH A 36 206 206 HOH HOH . H 6 HOH B 1 24 24 HOH HOH . H 6 HOH B 2 32 32 HOH HOH . H 6 HOH B 3 33 33 HOH HOH . H 6 HOH B 4 42 42 HOH HOH . H 6 HOH B 5 45 45 HOH HOH . H 6 HOH B 6 46 46 HOH HOH . H 6 HOH B 7 47 47 HOH HOH . H 6 HOH B 8 48 48 HOH HOH . H 6 HOH B 9 49 49 HOH HOH . H 6 HOH B 10 50 50 HOH HOH . H 6 HOH B 11 52 52 HOH HOH . H 6 HOH B 12 53 53 HOH HOH . H 6 HOH B 13 59 59 HOH HOH . H 6 HOH B 14 60 60 HOH HOH . H 6 HOH B 15 61 61 HOH HOH . H 6 HOH B 16 62 62 HOH HOH . H 6 HOH B 17 63 63 HOH HOH . H 6 HOH B 18 72 72 HOH HOH . H 6 HOH B 19 74 74 HOH HOH . H 6 HOH B 20 75 75 HOH HOH . H 6 HOH B 21 77 77 HOH HOH . H 6 HOH B 22 79 79 HOH HOH . H 6 HOH B 23 86 86 HOH HOH . H 6 HOH B 24 87 87 HOH HOH . H 6 HOH B 25 90 90 HOH HOH . H 6 HOH B 26 96 96 HOH HOH . H 6 HOH B 27 101 101 HOH HOH . H 6 HOH B 28 103 103 HOH HOH . H 6 HOH B 29 104 104 HOH HOH . H 6 HOH B 30 109 109 HOH HOH . H 6 HOH B 31 111 111 HOH HOH . H 6 HOH B 32 116 116 HOH HOH . H 6 HOH B 33 118 118 HOH HOH . H 6 HOH B 34 124 124 HOH HOH . H 6 HOH B 35 126 126 HOH HOH . H 6 HOH B 36 130 130 HOH HOH . H 6 HOH B 37 132 132 HOH HOH . H 6 HOH B 38 151 151 HOH HOH . H 6 HOH B 39 158 158 HOH HOH . H 6 HOH B 40 159 159 HOH HOH . H 6 HOH B 41 162 162 HOH HOH . H 6 HOH B 42 167 167 HOH HOH . H 6 HOH B 43 169 169 HOH HOH . H 6 HOH B 44 171 171 HOH HOH . H 6 HOH B 45 172 172 HOH HOH . H 6 HOH B 46 173 173 HOH HOH . H 6 HOH B 47 178 178 HOH HOH . H 6 HOH B 48 183 183 HOH HOH . H 6 HOH B 49 187 187 HOH HOH . H 6 HOH B 50 191 191 HOH HOH . H 6 HOH B 51 196 196 HOH HOH . H 6 HOH B 52 201 201 HOH HOH . H 6 HOH B 53 209 209 HOH HOH . H 6 HOH B 54 211 211 HOH HOH . I 6 HOH C 1 177 1 HOH HOH . I 6 HOH C 2 178 2 HOH HOH . I 6 HOH C 3 179 3 HOH HOH . I 6 HOH C 4 180 4 HOH HOH . I 6 HOH C 5 181 5 HOH HOH . I 6 HOH C 6 182 43 HOH HOH . I 6 HOH C 7 183 44 HOH HOH . I 6 HOH C 8 184 67 HOH HOH . I 6 HOH C 9 185 70 HOH HOH . I 6 HOH C 10 186 81 HOH HOH . I 6 HOH C 11 187 83 HOH HOH . I 6 HOH C 12 188 92 HOH HOH . I 6 HOH C 13 189 95 HOH HOH . I 6 HOH C 14 190 105 HOH HOH . I 6 HOH C 15 191 112 HOH HOH . I 6 HOH C 16 192 114 HOH HOH . I 6 HOH C 17 193 122 HOH HOH . I 6 HOH C 18 194 129 HOH HOH . I 6 HOH C 19 195 131 HOH HOH . I 6 HOH C 20 196 133 HOH HOH . I 6 HOH C 21 197 147 HOH HOH . I 6 HOH C 22 198 160 HOH HOH . I 6 HOH C 23 199 161 HOH HOH . I 6 HOH C 24 200 166 HOH HOH . I 6 HOH C 25 201 190 HOH HOH . I 6 HOH C 26 202 195 HOH HOH . I 6 HOH C 27 203 199 HOH HOH . I 6 HOH C 28 204 208 HOH HOH . I 6 HOH C 29 205 212 HOH HOH . I 6 HOH C 30 206 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG HG2 . . . F 5 44.234 9.981 -2.078 1 155.24 ? HG HG2 456 A 1 HETATM 2 BR BR1 HG2 . . . F 5 46.181 9.777 -0.147 1 158.36 ? BR1 HG2 456 A 1 HETATM 3 BR BR2 HG2 . . . F 5 44.527 12.279 -0.833 1 157.12 ? BR2 HG2 456 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #