data_1T8K
#
_model_server_result.job_id            yp8KpTAKymu-oQ13-Ga-Rw 
_model_server_result.datetime_utc      '2024-12-22 06:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1t8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    1T8K 
#
_exptl.entry_id    1T8K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1T8K 
_cell.length_a            27.51 
_cell.length_b            41.26 
_cell.length_c            62.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1T8K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 5 A GLU 5 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc2 A OE1 GLU 5 A GLU 5 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc3 A OE2 GLU 13 A GLU 13 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc4 A OE1 GLU 13 A GLU 13 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc5 A OE2 GLU 20 A GLU 20 1_555 K ZN ZN . A ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc6 A OE1 GLU 21 A GLU 21 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc7 A OE2 GLU 21 A GLU 21 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc8 A OD1 ASP 31 A ASP 31 3_545 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc9 A OD2 ASP 35 A ASP 35 4_565 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc10 A OD1 ASP 38 A ASP 38 4_565 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc11 A OE1 GLU 41 A GLU 41 1_555 J ZN ZN . A ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
metalc ? metalc12 A OE1 GLU 47 A GLU 47 1_655 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc13 A OE1 GLU 48 A GLU 48 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc14 A OE2 GLU 49 A GLU 49 4_455 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc15 A OE1 GLU 49 A GLU 49 4_455 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc16 A OD1 ASP 51 A ASP 51 4_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc17 A OE1 GLU 53 A GLU 53 1_655 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc18 A OD1 ASP 56 A ASP 56 1_555 G ZN ZN . A ZN 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc19 A OD1 ASP 56 A ASP 56 1_555 H ZN ZN . A ZN 207 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc20 A OE2 GLU 58 A GLU 58 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc21 A OE1 GLU 60 A GLU 60 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc22 A NE2 HIS 75 A HIS 75 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc23 B ZN ZN . A ZN 201 1_555 L N3 IMD . A IMD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc24 C ZN ZN . A ZN 202 1_555 O N1 IMD . A IMD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc25 D ZN ZN . A ZN 203 1_555 R O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? 
metalc ? metalc26 E ZN ZN . A ZN 204 1_555 M N3 IMD . A IMD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc27 E ZN ZN . A ZN 204 1_555 R O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc28 F ZN ZN . A ZN 205 1_555 N N3 IMD . A IMD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc29 F ZN ZN . A ZN 205 1_555 R O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc30 G ZN ZN . A ZN 206 1_555 R O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc31 G ZN ZN . A ZN 206 1_555 R O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc32 G ZN ZN . A ZN 206 1_555 R O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc33 H ZN ZN . A ZN 207 1_555 P N3 IMD . A IMD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc34 H ZN ZN . A ZN 207 1_555 Q N3 IMD . A IMD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc35 H ZN ZN . A ZN 207 1_555 R O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc36 I ZN ZN . A ZN 208 1_555 R O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
metalc ? metalc37 I ZN ZN . A ZN 208 1_555 R O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc38 I ZN ZN . A ZN 208 1_555 R O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc39 I ZN ZN . A ZN 208 1_555 R O HOH . A HOH 406 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc40 J ZN ZN . A ZN 209 4_565 L N1 IMD . A IMD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc41 J ZN ZN . A ZN 209 1_555 L N1 IMD . A IMD 301 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc42 J ZN ZN . A ZN 209 1_555 R O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc43 K ZN ZN . A ZN 210 1_555 R O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 160 n y 
N1 C5 IMD sing 161 n y 
N1 HN1 IMD sing 162 n n 
C2 N3 IMD doub 163 n y 
C2 H2 IMD sing 164 n n 
N3 C4 IMD sing 165 n y 
N3 HN3 IMD sing 166 n n 
C4 C5 IMD doub 167 n y 
C4 H4 IMD sing 168 n n 
C5 H5 IMD sing 169 n n 
#
_atom_sites.entry_id                     1T8K 
_atom_sites.fract_transf_matrix[1][1]    0.03635 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016005 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 201 1 ZN ZN9 . 
C 2 ZN A 1 202 2 ZN ZN9 . 
D 2 ZN A 1 203 3 ZN ZN9 . 
E 2 ZN A 1 204 4 ZN ZN9 . 
F 2 ZN A 1 205 5 ZN ZN9 . 
G 2 ZN A 1 206 6 ZN ZN9 . 
H 2 ZN A 1 207 7 ZN ZN9 . 
I 2 ZN A 1 208 8 ZN ZN9 . 
J 2 ZN A 1 209 9 ZN ZN9 . 
K 2 ZN A 1 210 10 ZN ZN9 . 
L 3 IMD A 1 301 1 IMD IMD . 
M 3 IMD A 1 302 2 IMD IMD . 
N 3 IMD A 1 303 3 IMD IMD . 
O 3 IMD A 1 304 4 IMD IMD . 
P 3 IMD A 1 305 5 IMD IMD . 
Q 3 IMD A 1 306 6 IMD IMD . 
R 4 HOH A 1 307 1 HOH HOH . 
R 4 HOH A 2 308 2 HOH HOH . 
R 4 HOH A 3 309 3 HOH HOH . 
R 4 HOH A 4 310 4 HOH HOH . 
R 4 HOH A 5 311 5 HOH HOH . 
R 4 HOH A 6 312 6 HOH HOH . 
R 4 HOH A 7 313 7 HOH HOH . 
R 4 HOH A 8 314 8 HOH HOH . 
R 4 HOH A 9 315 9 HOH HOH . 
R 4 HOH A 10 316 10 HOH HOH . 
R 4 HOH A 11 317 11 HOH HOH . 
R 4 HOH A 12 318 12 HOH HOH . 
R 4 HOH A 13 319 13 HOH HOH . 
R 4 HOH A 14 320 14 HOH HOH . 
R 4 HOH A 15 321 15 HOH HOH . 
R 4 HOH A 16 322 16 HOH HOH . 
R 4 HOH A 17 323 17 HOH HOH . 
R 4 HOH A 18 324 18 HOH HOH . 
R 4 HOH A 19 325 19 HOH HOH . 
R 4 HOH A 20 326 20 HOH HOH . 
R 4 HOH A 21 327 21 HOH HOH . 
R 4 HOH A 22 328 22 HOH HOH . 
R 4 HOH A 23 329 23 HOH HOH . 
R 4 HOH A 24 330 24 HOH HOH . 
R 4 HOH A 25 331 25 HOH HOH . 
R 4 HOH A 26 332 26 HOH HOH . 
R 4 HOH A 27 333 27 HOH HOH . 
R 4 HOH A 28 334 28 HOH HOH . 
R 4 HOH A 29 335 29 HOH HOH . 
R 4 HOH A 30 336 30 HOH HOH . 
R 4 HOH A 31 337 31 HOH HOH . 
R 4 HOH A 32 338 32 HOH HOH . 
R 4 HOH A 33 339 33 HOH HOH . 
R 4 HOH A 34 340 34 HOH HOH . 
R 4 HOH A 35 341 35 HOH HOH . 
R 4 HOH A 36 342 36 HOH HOH . 
R 4 HOH A 37 343 37 HOH HOH . 
R 4 HOH A 38 344 38 HOH HOH . 
R 4 HOH A 39 345 39 HOH HOH . 
R 4 HOH A 40 346 40 HOH HOH . 
R 4 HOH A 41 347 41 HOH HOH . 
R 4 HOH A 42 348 42 HOH HOH . 
R 4 HOH A 43 349 43 HOH HOH . 
R 4 HOH A 44 350 44 HOH HOH . 
R 4 HOH A 45 351 45 HOH HOH . 
R 4 HOH A 46 352 46 HOH HOH . 
R 4 HOH A 47 353 47 HOH HOH . 
R 4 HOH A 48 354 48 HOH HOH . 
R 4 HOH A 49 355 49 HOH HOH . 
R 4 HOH A 50 356 50 HOH HOH . 
R 4 HOH A 51 357 51 HOH HOH . 
R 4 HOH A 52 358 52 HOH HOH . 
R 4 HOH A 53 359 53 HOH HOH . 
R 4 HOH A 54 360 54 HOH HOH . 
R 4 HOH A 55 361 55 HOH HOH . 
R 4 HOH A 56 362 56 HOH HOH . 
R 4 HOH A 57 363 57 HOH HOH . 
R 4 HOH A 58 364 58 HOH HOH . 
R 4 HOH A 59 365 59 HOH HOH . 
R 4 HOH A 60 366 60 HOH HOH . 
R 4 HOH A 61 367 61 HOH HOH . 
R 4 HOH A 62 368 62 HOH HOH . 
R 4 HOH A 63 369 63 HOH HOH . 
R 4 HOH A 64 370 64 HOH HOH . 
R 4 HOH A 65 371 65 HOH HOH . 
R 4 HOH A 66 372 66 HOH HOH . 
R 4 HOH A 67 373 67 HOH HOH . 
R 4 HOH A 68 374 68 HOH HOH . 
R 4 HOH A 69 375 69 HOH HOH . 
R 4 HOH A 70 376 70 HOH HOH . 
R 4 HOH A 71 377 71 HOH HOH . 
R 4 HOH A 72 378 72 HOH HOH . 
R 4 HOH A 73 379 73 HOH HOH . 
R 4 HOH A 74 380 74 HOH HOH . 
R 4 HOH A 75 381 75 HOH HOH . 
R 4 HOH A 76 382 76 HOH HOH . 
R 4 HOH A 77 383 77 HOH HOH . 
R 4 HOH A 78 384 78 HOH HOH . 
R 4 HOH A 79 385 79 HOH HOH . 
R 4 HOH A 80 386 80 HOH HOH . 
R 4 HOH A 81 387 81 HOH HOH . 
R 4 HOH A 82 388 82 HOH HOH . 
R 4 HOH A 83 389 83 HOH HOH . 
R 4 HOH A 84 390 84 HOH HOH . 
R 4 HOH A 85 391 85 HOH HOH . 
R 4 HOH A 86 392 86 HOH HOH . 
R 4 HOH A 87 393 87 HOH HOH . 
R 4 HOH A 88 394 88 HOH HOH . 
R 4 HOH A 89 395 89 HOH HOH . 
R 4 HOH A 90 396 90 HOH HOH . 
R 4 HOH A 91 397 91 HOH HOH . 
R 4 HOH A 92 398 92 HOH HOH . 
R 4 HOH A 93 399 93 HOH HOH . 
R 4 HOH A 94 400 94 HOH HOH . 
R 4 HOH A 95 401 95 HOH HOH . 
R 4 HOH A 96 402 96 HOH HOH . 
R 4 HOH A 97 403 97 HOH HOH . 
R 4 HOH A 98 404 98 HOH HOH . 
R 4 HOH A 99 405 99 HOH HOH . 
R 4 HOH A 100 406 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . L 3 6.333 34.565 2.691 1 9.87 ? N1 IMD 301 A 1 
HETATM 2 C C2 IMD . . . L 3 7.258 34.156 1.802 1 8.23 ? C2 IMD 301 A 1 
HETATM 3 N N3 IMD . . . L 3 7.604 32.894 1.99 1 6.8 ? N3 IMD 301 A 1 
HETATM 4 C C4 IMD . . . L 3 6.874 32.471 3.065 1 7.94 ? C4 IMD 301 A 1 
HETATM 5 C C5 IMD . . . L 3 6.082 33.503 3.497 1 9.37 ? C5 IMD 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#