data_1T9W # _model_server_result.job_id nVhowaOZ6ShZvj99gOcf4Q _model_server_result.datetime_utc '2025-09-04 01:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":6002}' # _entry.id 1T9W # _exptl.entry_id 1T9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[[(2-ETHOXY-1-NAPHTHALENYL)CARBONYL]AMINO]-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T9W _cell.length_a 144.508 _cell.length_b 144.508 _cell.length_c 519.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C21 H21 N2 O5 S -1' _chem_comp.formula_weight 413.467 _chem_comp.id NFN _chem_comp.mon_nstd_flag . _chem_comp.name 6-[[(2-ETHOXY-1-NAPHTHALENYL)CARBONYL]AMINO]-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 NFN sing 235 n n O1 C17 NFN sing 236 n n C4 C3 NFN doub 237 n y C4 C10 NFN sing 238 n y C4 H4 NFN sing 239 n n C3 C2 NFN sing 240 n y C3 H3 NFN sing 241 n n C10 C9 NFN doub 242 n y C10 C5 NFN sing 243 n y C2 C1 NFN doub 244 n y C9 C1 NFN sing 245 n y C9 C8 NFN sing 246 n y C1 C11 NFN sing 247 n n C5 C6 NFN doub 248 n y C5 H5 NFN sing 249 n n C6 C7 NFN sing 250 n y C6 H6 NFN sing 251 n n C7 C8 NFN doub 252 n y C7 H7 NFN sing 253 n n C8 H8 NFN sing 254 n n O3 C14 NFN doub 255 n n C14 N2 NFN sing 256 n n C14 C12 NFN sing 257 n n N2 C16 NFN sing 258 n n N2 C13 NFN sing 259 n n C16 C21 NFN sing 260 n n C16 C15 NFN sing 261 n n C16 H16 NFN sing 262 n n C21 O4 NFN sing 263 n n C21 O5 NFN doub 264 n n C15 C19 NFN sing 265 n n C15 C20 NFN sing 266 n n C15 S1 NFN sing 267 n n C19 H191 NFN sing 268 n n C19 H192 NFN sing 269 n n C19 H193 NFN sing 270 n n C20 H201 NFN sing 271 n n C20 H202 NFN sing 272 n n C20 H203 NFN sing 273 n n S1 C13 NFN sing 274 n n C13 C12 NFN sing 275 n n C13 H13 NFN sing 276 n n C12 N1 NFN sing 277 n n C12 H12 NFN sing 278 n n N1 C11 NFN sing 279 n n N1 HN1 NFN sing 280 n n C11 O2 NFN doub 281 n n C17 C18 NFN sing 282 n n C17 H171 NFN sing 283 n n C17 H172 NFN sing 284 n n C18 H181 NFN sing 285 n n C18 H182 NFN sing 286 n n C18 H183 NFN sing 287 n n # _atom_sites.entry_id 1T9W _atom_sites.fract_transf_matrix[1][1] 0.00692 _atom_sites.fract_transf_matrix[1][2] 0.003995 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NFN A 1 6001 6001 NFN NFN . C 2 NFN A 1 6002 6002 NFN NFN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 NFN . . . C 2 8.937 37.368 103.896 1 39.68 ? O1 NFN 6002 A 1 HETATM 2 C C4 NFN . . . C 2 6.543 39.512 105.716 1 52.64 ? C4 NFN 6002 A 1 HETATM 3 C C3 NFN . . . C 2 7.396 38.473 105.363 1 71.91 ? C3 NFN 6002 A 1 HETATM 4 C C10 NFN . . . C 2 6.342 40.602 104.883 1 39.97 ? C10 NFN 6002 A 1 HETATM 5 C C2 NFN . . . C 2 8.11 38.444 104.156 1 52.5 ? C2 NFN 6002 A 1 HETATM 6 C C9 NFN . . . C 2 7.051 40.704 103.538 1 71.71 ? C9 NFN 6002 A 1 HETATM 7 C C1 NFN . . . C 2 7.966 39.573 103.173 1 40.25 ? C1 NFN 6002 A 1 HETATM 8 C C5 NFN . . . C 2 5.476 41.632 105.282 1 52.36 ? C5 NFN 6002 A 1 HETATM 9 C C6 NFN . . . C 2 5.436 42.581 104.296 1 71.51 ? C6 NFN 6002 A 1 HETATM 10 C C7 NFN . . . C 2 5.981 42.869 103.073 1 40.54 ? C7 NFN 6002 A 1 HETATM 11 C C8 NFN . . . C 2 6.844 41.831 102.674 1 52.22 ? C8 NFN 6002 A 1 HETATM 12 O O3 NFN . . . C 2 7.525 37.61 97.593 1 65.43 ? O3 NFN 6002 A 1 HETATM 13 C C14 NFN . . . C 2 7.84 37.298 98.73 1 63.94 ? C14 NFN 6002 A 1 HETATM 14 N N2 NFN . . . C 2 8.044 36.129 99.249 1 65.14 ? N2 NFN 6002 A 1 HETATM 15 C C16 NFN . . . C 2 7.893 34.691 99.145 1 67.58 ? C16 NFN 6002 A 1 HETATM 16 C C21 NFN . . . C 2 8.565 34.112 97.931 1 68.34 ? C21 NFN 6002 A 1 HETATM 17 O O4 NFN . . . C 2 9.716 34.497 97.635 1 67.72 ? O4 NFN 6002 A 1 HETATM 18 O O5 NFN . . . C 2 7.94 33.262 97.257 1 69.92 ? O5 NFN 6002 A 1 HETATM 19 C C15 NFN . . . C 2 8.421 34.166 100.524 1 67.23 ? C15 NFN 6002 A 1 HETATM 20 C C19 NFN . . . C 2 7.331 33.39 101.26 1 68.59 ? C19 NFN 6002 A 1 HETATM 21 C C20 NFN . . . C 2 9.689 33.314 100.426 1 67.74 ? C20 NFN 6002 A 1 HETATM 22 S S1 NFN . . . C 2 8.858 35.556 101.551 1 69.6 ? S1 NFN 6002 A 1 HETATM 23 C C13 NFN . . . C 2 8.783 36.701 100.249 1 65.15 ? C13 NFN 6002 A 1 HETATM 24 C C12 NFN . . . C 2 8.515 38.197 99.816 1 63.38 ? C12 NFN 6002 A 1 HETATM 25 N N1 NFN . . . C 2 8.942 38.444 101.196 1 57.33 ? N1 NFN 6002 A 1 HETATM 26 C C11 NFN . . . C 2 8.717 39.582 101.86 1 55.57 ? C11 NFN 6002 A 1 HETATM 27 O O2 NFN . . . C 2 9.125 40.643 101.414 1 60.24 ? O2 NFN 6002 A 1 HETATM 28 C C17 NFN . . . C 2 9.318 36.449 104.936 1 49.25 ? C17 NFN 6002 A 1 HETATM 29 C C18 NFN . . . C 2 10.357 35.434 104.484 1 48.03 ? C18 NFN 6002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #