data_1T9Y # _model_server_result.job_id 3g-08A1-0DYEjGRCZDZN9w _model_server_result.datetime_utc '2024-11-21 14:28:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1t9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":7001}' # _entry.id 1T9Y # _exptl.entry_id 1T9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.545 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N2-(L-PHENYLALANYL)-N1-(NAPHTHALENYL)-L-ARIGNINAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1T9Y _cell.length_a 144.922 _cell.length_b 144.922 _cell.length_c 516.675 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C25 H30 N6 O2' _chem_comp.formula_weight 446.545 _chem_comp.id MC2 _chem_comp.mon_nstd_flag . _chem_comp.name N2-(L-PHENYLALANYL)-N1-(NAPHTHALENYL)-L-ARIGNINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C11 MC2 doub 216 n n C11 N6 MC2 sing 217 n n C11 C10 MC2 sing 218 n n N6 C19 MC2 sing 219 n n N6 HN6 MC2 sing 220 n n C19 C21 MC2 doub 221 n y C19 C17 MC2 sing 222 n y C21 C20 MC2 sing 223 n y C21 H21 MC2 sing 224 n n C20 C25 MC2 doub 225 n y C20 C18 MC2 sing 226 n y C25 C24 MC2 sing 227 n y C25 H25 MC2 sing 228 n n C24 C23 MC2 doub 229 n y C24 H24 MC2 sing 230 n n C23 C22 MC2 sing 231 n y C23 H23 MC2 sing 232 n n C18 C22 MC2 doub 233 n y C18 C16 MC2 sing 234 n y C22 H22 MC2 sing 235 n n C17 C16 MC2 doub 236 n y C17 H17 MC2 sing 237 n n C16 H16 MC2 sing 238 n n C10 C12 MC2 sing 239 n n C10 N2 MC2 sing 240 n n C10 H10 MC2 sing 241 n n C12 C13 MC2 sing 242 n n C12 H121 MC2 sing 243 n n C12 H122 MC2 sing 244 n n C13 C14 MC2 sing 245 n n C13 H131 MC2 sing 246 n n C13 H132 MC2 sing 247 n n C14 N3 MC2 sing 248 n n C14 H141 MC2 sing 249 n n C14 H142 MC2 sing 250 n n N3 C15 MC2 sing 251 n n N3 HN3 MC2 sing 252 n n C15 N5 MC2 doub 253 e n C15 N4 MC2 sing 254 n n N5 HN5 MC2 sing 255 n n N4 HN41 MC2 sing 256 n n N4 HN42 MC2 sing 257 n n N2 C2 MC2 sing 258 n n N2 HN2 MC2 sing 259 n n C2 O1 MC2 doub 260 n n C2 C1 MC2 sing 261 n n C1 N1 MC2 sing 262 n n C1 C3 MC2 sing 263 n n C1 H1 MC2 sing 264 n n N1 HN11 MC2 sing 265 n n N1 HN12 MC2 sing 266 n n C3 C4 MC2 sing 267 n n C3 H31 MC2 sing 268 n n C3 H32 MC2 sing 269 n n C4 C5 MC2 doub 270 n y C4 C6 MC2 sing 271 n y C5 C7 MC2 sing 272 n y C5 H5 MC2 sing 273 n n C7 C9 MC2 doub 274 n y C7 H7 MC2 sing 275 n n C9 C8 MC2 sing 276 n y C9 H9 MC2 sing 277 n n C8 C6 MC2 doub 278 n y C8 H8 MC2 sing 279 n n C6 H6 MC2 sing 280 n n # _atom_sites.entry_id 1T9Y _atom_sites.fract_transf_matrix[1][1] 0.0069 _atom_sites.fract_transf_matrix[1][2] 0.003984 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC2 A 1 7001 7001 MC2 MC2 . C 2 MC2 A 1 7002 7002 MC2 MC2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 MC2 . . . B 2 2.769 2.098 128.599 1 20 ? O2 MC2 7001 A 1 HETATM 2 C C11 MC2 . . . B 2 2.95 2.95 129.455 1 20 ? C11 MC2 7001 A 1 HETATM 3 N N6 MC2 . . . B 2 4.082 3.641 129.586 1 20 ? N6 MC2 7001 A 1 HETATM 4 C C19 MC2 . . . B 2 4.878 3.895 128.505 1 20 ? C19 MC2 7001 A 1 HETATM 5 C C21 MC2 . . . B 2 4.835 3.195 127.284 1 20 ? C21 MC2 7001 A 1 HETATM 6 C C20 MC2 . . . B 2 5.664 3.567 126.227 1 20 ? C20 MC2 7001 A 1 HETATM 7 C C25 MC2 . . . B 2 5.66 2.882 125.016 1 20 ? C25 MC2 7001 A 1 HETATM 8 C C24 MC2 . . . B 2 6.509 3.29 123.982 1 20 ? C24 MC2 7001 A 1 HETATM 9 C C23 MC2 . . . B 2 7.37 4.38 124.141 1 20 ? C23 MC2 7001 A 1 HETATM 10 C C18 MC2 . . . B 2 6.577 4.72 126.39 1 20 ? C18 MC2 7001 A 1 HETATM 11 C C22 MC2 . . . B 2 7.408 5.095 125.338 1 20 ? C22 MC2 7001 A 1 HETATM 12 C C17 MC2 . . . B 2 5.733 4.996 128.632 1 20 ? C17 MC2 7001 A 1 HETATM 13 C C16 MC2 . . . B 2 6.576 5.397 127.599 1 20 ? C16 MC2 7001 A 1 HETATM 14 C C10 MC2 . . . B 2 1.731 3.41 130.209 1 20 ? C10 MC2 7001 A 1 HETATM 15 C C12 MC2 . . . B 2 1.106 4.435 129.246 1 20 ? C12 MC2 7001 A 1 HETATM 16 C C13 MC2 . . . B 2 1.919 5.733 129.172 1 20 ? C13 MC2 7001 A 1 HETATM 17 C C14 MC2 . . . B 2 1.045 6.979 129.241 1 20 ? C14 MC2 7001 A 1 HETATM 18 N N3 MC2 . . . B 2 1.838 8.172 129.486 1 20 ? N3 MC2 7001 A 1 HETATM 19 C C15 MC2 . . . B 2 1.311 9.392 129.624 1 20 ? C15 MC2 7001 A 1 HETATM 20 N N5 MC2 . . . B 2 -0.008 9.608 129.537 1 20 ? N5 MC2 7001 A 1 HETATM 21 N N4 MC2 . . . B 2 2.088 10.363 129.846 1 20 ? N4 MC2 7001 A 1 HETATM 22 N N2 MC2 . . . B 2 1.891 4.022 131.527 1 20 ? N2 MC2 7001 A 1 HETATM 23 C C2 MC2 . . . B 2 0.816 4.407 132.23 1 20 ? C2 MC2 7001 A 1 HETATM 24 O O1 MC2 . . . B 2 -0.327 4.189 131.853 1 20 ? O1 MC2 7001 A 1 HETATM 25 C C1 MC2 . . . B 2 1.048 5.177 133.503 1 20 ? C1 MC2 7001 A 1 HETATM 26 N N1 MC2 . . . B 2 1.773 6.392 133.181 1 20 ? N1 MC2 7001 A 1 HETATM 27 C C3 MC2 . . . B 2 -0.284 5.551 134.166 1 20 ? C3 MC2 7001 A 1 HETATM 28 C C4 MC2 . . . B 2 -0.205 5.55 135.678 1 20 ? C4 MC2 7001 A 1 HETATM 29 C C5 MC2 . . . B 2 -0.506 6.709 136.394 1 20 ? C5 MC2 7001 A 1 HETATM 30 C C7 MC2 . . . B 2 -0.442 6.705 137.786 1 20 ? C7 MC2 7001 A 1 HETATM 31 C C9 MC2 . . . B 2 -0.084 5.542 138.465 1 20 ? C9 MC2 7001 A 1 HETATM 32 C C8 MC2 . . . B 2 0.211 4.382 137.75 1 20 ? C8 MC2 7001 A 1 HETATM 33 C C6 MC2 . . . B 2 0.145 4.385 136.359 1 20 ? C6 MC2 7001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #