data_1TBJ
#
_model_server_result.job_id            brdIWVBpqT_ItBg9uti5pg 
_model_server_result.datetime_utc      '2025-08-31 12:18:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tbj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1001}' 
#
_entry.id    1TBJ 
#
_exptl.entry_id    1TBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1TBJ 
_cell.length_a            87.815 
_cell.length_b            87.815 
_cell.length_c            110.916 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 96 A HIS 101 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc2 A OD1 ASP 119 A ASP 124 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc3 A OD2 ASP 119 A ASP 124 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc4 A ND1 HIS 121 A HIS 126 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 A OD2 ASP 123 A ASP 128 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc6 A OD2 ASP 227 A ASP 232 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc7 A OD2 ASP 227 A ASP 232 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc8 A OD1 ASP 229 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc9 A OD2 ASP 229 A ASP 234 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc10 D MN MN . A MN 500 1_555 M O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc11 E MN MN . A MN 501 1_555 M O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc12 B ND1 HIS 96 B HIS 101 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc13 B OD1 ASP 119 B ASP 124 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc14 B OD2 ASP 119 B ASP 124 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc15 B ND1 HIS 121 B HIS 126 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc16 B OD2 ASP 123 B ASP 128 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc17 B OD2 ASP 227 B ASP 232 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc18 B OD2 ASP 227 B ASP 232 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc19 B OD1 ASP 229 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc20 B OD2 ASP 229 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc21 G MN MN . B MN 502 1_555 N O HOH . B HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc22 H MN MN . B MN 503 1_555 N O HOH . B HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc23 C ND1 HIS 96 C HIS 101 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc24 C OD1 ASP 119 C ASP 124 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc25 C OD2 ASP 119 C ASP 124 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc26 C ND1 HIS 121 C HIS 126 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc27 C OD2 ASP 123 C ASP 128 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc28 C OD2 ASP 227 C ASP 232 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc29 C OD2 ASP 227 C ASP 232 1_555 K MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc30 C OD1 ASP 229 C ASP 234 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc31 C OD2 ASP 229 C ASP 234 1_555 J MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc32 J MN MN . C MN 504 1_555 O O HOH . C HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc33 K MN MN . C MN 505 1_555 O O HOH . C HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1TBJ 
_atom_sites.fract_transf_matrix[1][1]    0.011388 
_atom_sites.fract_transf_matrix[1][2]    0.006575 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MN A 1 500 500 MN MN . 
E 2 MN A 1 501 501 MN MN . 
F 3 GOL A 1 1000 1000 GOL GOL . 
G 2 MN B 1 502 502 MN MN . 
H 2 MN B 1 503 503 MN MN . 
I 3 GOL B 1 1001 1001 GOL GOL . 
J 2 MN C 1 504 504 MN MN . 
K 2 MN C 1 505 505 MN MN . 
L 3 GOL C 1 1002 1002 GOL GOL . 
M 4 HOH A 1 800 800 HOH WAT . 
M 4 HOH A 2 803 803 HOH WAT . 
M 4 HOH A 3 809 809 HOH WAT . 
M 4 HOH A 4 811 811 HOH WAT . 
M 4 HOH A 5 819 819 HOH WAT . 
M 4 HOH A 6 821 821 HOH WAT . 
M 4 HOH A 7 825 825 HOH WAT . 
M 4 HOH A 8 827 827 HOH WAT . 
N 4 HOH B 1 801 801 HOH WAT . 
N 4 HOH B 2 805 805 HOH WAT . 
N 4 HOH B 3 806 806 HOH WAT . 
N 4 HOH B 4 807 807 HOH WAT . 
N 4 HOH B 5 808 808 HOH WAT . 
N 4 HOH B 6 810 810 HOH WAT . 
N 4 HOH B 7 812 812 HOH WAT . 
N 4 HOH B 8 813 813 HOH WAT . 
N 4 HOH B 9 818 818 HOH WAT . 
N 4 HOH B 10 820 820 HOH WAT . 
N 4 HOH B 11 822 822 HOH WAT . 
N 4 HOH B 12 823 823 HOH WAT . 
O 4 HOH C 1 802 802 HOH WAT . 
O 4 HOH C 2 804 804 HOH WAT . 
O 4 HOH C 3 814 814 HOH WAT . 
O 4 HOH C 4 815 815 HOH WAT . 
O 4 HOH C 5 824 824 HOH WAT . 
O 4 HOH C 6 826 826 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -39.45 29.003 -3.577 1 32.85 ? C1 GOL 1001 B 1 
HETATM 2 O O1 GOL . . . I 3 -38.657 29.332 -2.41 1 39.55 ? O1 GOL 1001 B 1 
HETATM 3 C C2 GOL . . . I 3 -40.455 27.981 -3.163 1 34.22 ? C2 GOL 1001 B 1 
HETATM 4 O O2 GOL . . . I 3 -41.76 28.157 -3.775 1 37.83 ? O2 GOL 1001 B 1 
HETATM 5 C C3 GOL . . . I 3 -39.933 26.614 -3.493 1 31.58 ? C3 GOL 1001 B 1 
HETATM 6 O O3 GOL . . . I 3 -38.943 26.277 -2.372 1 43.13 ? O3 GOL 1001 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           411 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#