data_1TBZ # _model_server_result.job_id 2DmTGetmoWA_E4tZR-licg _model_server_result.datetime_utc '2024-11-22 05:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1TBZ # _exptl.entry_id 1TBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101 _cell.angle_gamma 90 _cell.entry_id 1TBZ _cell.length_a 70.79 _cell.length_b 72.53 _cell.length_c 73.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 B OG SER 205 H SER 195 1_555 D CY 00Q . H 00Q 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.683 ? covale ? covale2 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 E NA NA . H NA 1 1_555 B O ARG 233 H ARG 221 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 E NA NA . H NA 1 1_555 B O LYS 236 H LYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 E NA NA . H NA 1 1_555 H O HOH . H HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc4 F NA NA . H NA 2 1_555 B O LYS 174 H LYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc5 F NA NA . H NA 2 1_555 B O THR 177 H THR 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 F NA NA . H NA 2 1_555 B O PHE 215 H PHE 204 4_546 ? ? ? A ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 F NA NA . H NA 2 1_555 H O HOH . H HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TBZ _atom_sites.fract_transf_matrix[1][1] 0.014126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 00Q H 1 343 343 00Q 00Q . E 5 NA H 1 1 1 NA NA . F 5 NA H 1 2 2 NA NA . G 6 HOH L 1 404 404 HOH HOH . G 6 HOH L 2 421 421 HOH HOH . G 6 HOH L 3 457 457 HOH HOH . G 6 HOH L 4 507 507 HOH HOH . G 6 HOH L 5 509 509 HOH HOH . G 6 HOH L 6 519 519 HOH HOH . G 6 HOH L 7 538 538 HOH HOH . G 6 HOH L 8 546 546 HOH HOH . G 6 HOH L 9 613 613 HOH HOH . G 6 HOH L 10 623 623 HOH HOH . G 6 HOH L 11 625 625 HOH HOH . G 6 HOH L 12 644 644 HOH HOH . G 6 HOH L 13 746 746 HOH HOH . G 6 HOH L 14 766 766 HOH HOH . G 6 HOH L 15 785 785 HOH HOH . H 6 HOH H 1 400 400 HOH HOH . H 6 HOH H 2 401 401 HOH HOH . H 6 HOH H 3 402 402 HOH HOH . H 6 HOH H 4 403 403 HOH HOH . H 6 HOH H 5 405 405 HOH HOH . H 6 HOH H 6 406 406 HOH HOH . H 6 HOH H 7 407 407 HOH HOH . H 6 HOH H 8 408 408 HOH HOH . H 6 HOH H 9 409 409 HOH HOH . H 6 HOH H 10 410 410 HOH HOH . H 6 HOH H 11 411 411 HOH HOH . H 6 HOH H 12 412 412 HOH HOH . H 6 HOH H 13 413 413 HOH HOH . H 6 HOH H 14 414 414 HOH HOH . H 6 HOH H 15 415 415 HOH HOH . H 6 HOH H 16 416 416 HOH HOH . H 6 HOH H 17 417 417 HOH HOH . H 6 HOH H 18 418 418 HOH HOH . H 6 HOH H 19 419 419 HOH HOH . H 6 HOH H 20 420 420 HOH HOH . H 6 HOH H 21 422 422 HOH HOH . H 6 HOH H 22 423 423 HOH HOH . H 6 HOH H 23 424 424 HOH HOH . H 6 HOH H 24 425 425 HOH HOH . H 6 HOH H 25 433 433 HOH HOH . H 6 HOH H 26 434 434 HOH HOH . H 6 HOH H 27 435 435 HOH HOH . H 6 HOH H 28 436 436 HOH HOH . H 6 HOH H 29 439 439 HOH HOH . H 6 HOH H 30 441 441 HOH HOH . H 6 HOH H 31 442 442 HOH HOH . H 6 HOH H 32 443 443 HOH HOH . H 6 HOH H 33 444 444 HOH HOH . H 6 HOH H 34 447 447 HOH HOH . H 6 HOH H 35 448 448 HOH HOH . H 6 HOH H 36 449 449 HOH HOH . H 6 HOH H 37 453 453 HOH HOH . H 6 HOH H 38 455 455 HOH HOH . H 6 HOH H 39 458 458 HOH HOH . H 6 HOH H 40 459 459 HOH HOH . H 6 HOH H 41 460 460 HOH HOH . H 6 HOH H 42 463 463 HOH HOH . H 6 HOH H 43 500 500 HOH HOH . H 6 HOH H 44 501 501 HOH HOH . H 6 HOH H 45 502 502 HOH HOH . H 6 HOH H 46 503 503 HOH HOH . H 6 HOH H 47 504 504 HOH HOH . H 6 HOH H 48 505 505 HOH HOH . H 6 HOH H 49 506 506 HOH HOH . H 6 HOH H 50 510 510 HOH HOH . H 6 HOH H 51 512 512 HOH HOH . H 6 HOH H 52 514 514 HOH HOH . H 6 HOH H 53 517 517 HOH HOH . H 6 HOH H 54 520 520 HOH HOH . H 6 HOH H 55 521 521 HOH HOH . H 6 HOH H 56 522 522 HOH HOH . H 6 HOH H 57 523 523 HOH HOH . H 6 HOH H 58 524 524 HOH HOH . H 6 HOH H 59 526 526 HOH HOH . H 6 HOH H 60 529 529 HOH HOH . H 6 HOH H 61 530 530 HOH HOH . H 6 HOH H 62 532 532 HOH HOH . H 6 HOH H 63 534 534 HOH HOH . H 6 HOH H 64 536 536 HOH HOH . H 6 HOH H 65 548 548 HOH HOH . H 6 HOH H 66 551 551 HOH HOH . H 6 HOH H 67 554 554 HOH HOH . H 6 HOH H 68 600 600 HOH HOH . H 6 HOH H 69 601 601 HOH HOH . H 6 HOH H 70 602 602 HOH HOH . H 6 HOH H 71 603 603 HOH HOH . H 6 HOH H 72 605 605 HOH HOH . H 6 HOH H 73 609 609 HOH HOH . H 6 HOH H 74 611 611 HOH HOH . H 6 HOH H 75 612 612 HOH HOH . H 6 HOH H 76 617 617 HOH HOH . H 6 HOH H 77 619 619 HOH HOH . H 6 HOH H 78 620 620 HOH HOH . H 6 HOH H 79 627 627 HOH HOH . H 6 HOH H 80 631 631 HOH HOH . H 6 HOH H 81 632 632 HOH HOH . H 6 HOH H 82 636 636 HOH HOH . H 6 HOH H 83 638 638 HOH HOH . H 6 HOH H 84 645 645 HOH HOH . H 6 HOH H 85 649 649 HOH HOH . H 6 HOH H 86 650 650 HOH HOH . H 6 HOH H 87 651 651 HOH HOH . H 6 HOH H 88 652 652 HOH HOH . H 6 HOH H 89 657 657 HOH HOH . H 6 HOH H 90 671 671 HOH HOH . H 6 HOH H 91 680 680 HOH HOH . H 6 HOH H 92 682 682 HOH HOH . H 6 HOH H 93 698 698 HOH HOH . H 6 HOH H 94 703 703 HOH HOH . H 6 HOH H 95 709 709 HOH HOH . H 6 HOH H 96 711 711 HOH HOH . H 6 HOH H 97 712 712 HOH HOH . H 6 HOH H 98 714 714 HOH HOH . H 6 HOH H 99 720 720 HOH HOH . H 6 HOH H 100 722 722 HOH HOH . H 6 HOH H 101 723 723 HOH HOH . H 6 HOH H 102 724 724 HOH HOH . H 6 HOH H 103 725 725 HOH HOH . H 6 HOH H 104 731 731 HOH HOH . H 6 HOH H 105 736 736 HOH HOH . H 6 HOH H 106 738 738 HOH HOH . H 6 HOH H 107 777 777 HOH HOH . I 6 HOH I 1 660 660 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.914 _atom_site.Cartn_y -14.122 _atom_site.Cartn_z 30.574 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 23.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #