data_1TC1 # _model_server_result.job_id MaN2kjV1DNpKQY7nogXmKw _model_server_result.datetime_utc '2024-11-06 03:12:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1TC1 # _exptl.entry_id 1TC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMYCIN B' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.75 _cell.angle_gamma 90 _cell.entry_id 1TC1 _cell.length_a 39.5 _cell.length_b 94.09 _cell.length_c 52.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id FMB _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMYCIN B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMB sing 83 n y N1 C6 FMB sing 84 n y N1 HN1 FMB sing 85 n n C2 N3 FMB doub 86 n y C2 H2 FMB sing 87 n n N3 C4 FMB sing 88 n y C4 C5 FMB doub 89 n y C4 C9 FMB sing 90 n y C5 C6 FMB sing 91 n y C5 N7 FMB sing 92 n y C6 O6 FMB doub 93 n n N7 N8 FMB sing 94 n y N7 HN7 FMB sing 95 n n N8 C9 FMB doub 96 n y C9 C1' FMB sing 97 n n C1' C2' FMB sing 98 n n C1' O4' FMB sing 99 n n C1' H1' FMB sing 100 n n C2' O2' FMB sing 101 n n C2' C3' FMB sing 102 n n C2' H2' FMB sing 103 n n O2' HO2 FMB sing 104 n n C3' O3' FMB sing 105 n n C3' C4' FMB sing 106 n n C3' H3' FMB sing 107 n n O3' HO3 FMB sing 108 n n C4' O4' FMB sing 109 n n C4' C5' FMB sing 110 n n C4' H4' FMB sing 111 n n C5' O5' FMB sing 112 n n C5' "H5'1" FMB sing 113 n n C5' "H5'2" FMB sing 114 n n O5' HO5 FMB sing 115 n n # _atom_sites.entry_id 1TC1 _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002104 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMB A 1 900 900 FMB FMB . D 3 MES A 1 800 800 MES MES . E 2 FMB B 1 901 901 FMB FMB . F 3 MES B 1 801 801 MES MES . G 4 HOH A 1 901 1 HOH HOH . G 4 HOH A 2 902 2 HOH HOH . G 4 HOH A 3 903 3 HOH HOH . G 4 HOH A 4 904 5 HOH HOH . G 4 HOH A 5 905 6 HOH HOH . G 4 HOH A 6 906 7 HOH HOH . G 4 HOH A 7 907 8 HOH HOH . G 4 HOH A 8 908 9 HOH HOH . G 4 HOH A 9 909 10 HOH HOH . G 4 HOH A 10 910 11 HOH HOH . G 4 HOH A 11 911 12 HOH HOH . G 4 HOH A 12 912 13 HOH HOH . G 4 HOH A 13 913 14 HOH HOH . G 4 HOH A 14 914 16 HOH HOH . G 4 HOH A 15 915 17 HOH HOH . G 4 HOH A 16 916 18 HOH HOH . G 4 HOH A 17 917 19 HOH HOH . G 4 HOH A 18 918 20 HOH HOH . G 4 HOH A 19 919 21 HOH HOH . G 4 HOH A 20 920 22 HOH HOH . G 4 HOH A 21 921 23 HOH HOH . G 4 HOH A 22 922 24 HOH HOH . G 4 HOH A 23 923 25 HOH HOH . G 4 HOH A 24 924 28 HOH HOH . G 4 HOH A 25 925 30 HOH HOH . G 4 HOH A 26 926 52 HOH HOH . G 4 HOH A 27 927 53 HOH HOH . G 4 HOH A 28 928 54 HOH HOH . G 4 HOH A 29 929 95 HOH HOH . G 4 HOH A 30 930 97 HOH HOH . G 4 HOH A 31 931 99 HOH HOH . G 4 HOH A 32 932 100 HOH HOH . G 4 HOH A 33 933 101 HOH HOH . G 4 HOH A 34 934 102 HOH HOH . G 4 HOH A 35 935 103 HOH HOH . G 4 HOH A 36 936 104 HOH HOH . G 4 HOH A 37 937 105 HOH HOH . G 4 HOH A 38 938 106 HOH HOH . G 4 HOH A 39 939 107 HOH HOH . G 4 HOH A 40 940 108 HOH HOH . G 4 HOH A 41 941 110 HOH HOH . G 4 HOH A 42 942 111 HOH HOH . G 4 HOH A 43 943 112 HOH HOH . G 4 HOH A 44 944 113 HOH HOH . G 4 HOH A 45 945 114 HOH HOH . G 4 HOH A 46 946 115 HOH HOH . G 4 HOH A 47 947 116 HOH HOH . G 4 HOH A 48 948 117 HOH HOH . G 4 HOH A 49 949 118 HOH HOH . G 4 HOH A 50 950 119 HOH HOH . G 4 HOH A 51 951 120 HOH HOH . G 4 HOH A 52 952 126 HOH HOH . G 4 HOH A 53 953 127 HOH HOH . G 4 HOH A 54 954 128 HOH HOH . G 4 HOH A 55 955 129 HOH HOH . G 4 HOH A 56 956 130 HOH HOH . G 4 HOH A 57 957 131 HOH HOH . G 4 HOH A 58 958 132 HOH HOH . G 4 HOH A 59 959 134 HOH HOH . G 4 HOH A 60 960 137 HOH HOH . G 4 HOH A 61 961 150 HOH HOH . G 4 HOH A 62 962 151 HOH HOH . G 4 HOH A 63 963 152 HOH HOH . G 4 HOH A 64 964 154 HOH HOH . G 4 HOH A 65 965 165 HOH HOH . G 4 HOH A 66 966 166 HOH HOH . G 4 HOH A 67 967 167 HOH HOH . G 4 HOH A 68 968 168 HOH HOH . H 4 HOH B 1 902 26 HOH HOH . H 4 HOH B 2 903 27 HOH HOH . H 4 HOH B 3 904 29 HOH HOH . H 4 HOH B 4 905 31 HOH HOH . H 4 HOH B 5 906 32 HOH HOH . H 4 HOH B 6 907 33 HOH HOH . H 4 HOH B 7 908 34 HOH HOH . H 4 HOH B 8 909 35 HOH HOH . H 4 HOH B 9 910 36 HOH HOH . H 4 HOH B 10 911 37 HOH HOH . H 4 HOH B 11 912 39 HOH HOH . H 4 HOH B 12 913 40 HOH HOH . H 4 HOH B 13 914 41 HOH HOH . H 4 HOH B 14 915 42 HOH HOH . H 4 HOH B 15 916 44 HOH HOH . H 4 HOH B 16 917 45 HOH HOH . H 4 HOH B 17 918 46 HOH HOH . H 4 HOH B 18 919 47 HOH HOH . H 4 HOH B 19 920 48 HOH HOH . H 4 HOH B 20 921 49 HOH HOH . H 4 HOH B 21 922 50 HOH HOH . H 4 HOH B 22 923 51 HOH HOH . H 4 HOH B 23 924 55 HOH HOH . H 4 HOH B 24 925 56 HOH HOH . H 4 HOH B 25 926 57 HOH HOH . H 4 HOH B 26 927 58 HOH HOH . H 4 HOH B 27 928 59 HOH HOH . H 4 HOH B 28 929 60 HOH HOH . H 4 HOH B 29 930 61 HOH HOH . H 4 HOH B 30 931 62 HOH HOH . H 4 HOH B 31 932 65 HOH HOH . H 4 HOH B 32 933 66 HOH HOH . H 4 HOH B 33 934 67 HOH HOH . H 4 HOH B 34 935 68 HOH HOH . H 4 HOH B 35 936 69 HOH HOH . H 4 HOH B 36 937 70 HOH HOH . H 4 HOH B 37 938 71 HOH HOH . H 4 HOH B 38 939 72 HOH HOH . H 4 HOH B 39 940 73 HOH HOH . H 4 HOH B 40 941 74 HOH HOH . H 4 HOH B 41 942 75 HOH HOH . H 4 HOH B 42 943 76 HOH HOH . H 4 HOH B 43 944 77 HOH HOH . H 4 HOH B 44 945 78 HOH HOH . H 4 HOH B 45 946 79 HOH HOH . H 4 HOH B 46 947 80 HOH HOH . H 4 HOH B 47 948 81 HOH HOH . H 4 HOH B 48 949 82 HOH HOH . H 4 HOH B 49 950 83 HOH HOH . H 4 HOH B 50 951 84 HOH HOH . H 4 HOH B 51 952 85 HOH HOH . H 4 HOH B 52 953 86 HOH HOH . H 4 HOH B 53 954 87 HOH HOH . H 4 HOH B 54 955 88 HOH HOH . H 4 HOH B 55 956 89 HOH HOH . H 4 HOH B 56 957 90 HOH HOH . H 4 HOH B 57 958 91 HOH HOH . H 4 HOH B 58 959 92 HOH HOH . H 4 HOH B 59 960 93 HOH HOH . H 4 HOH B 60 961 94 HOH HOH . H 4 HOH B 61 962 96 HOH HOH . H 4 HOH B 62 963 109 HOH HOH . H 4 HOH B 63 964 121 HOH HOH . H 4 HOH B 64 965 122 HOH HOH . H 4 HOH B 65 966 123 HOH HOH . H 4 HOH B 66 967 125 HOH HOH . H 4 HOH B 67 968 133 HOH HOH . H 4 HOH B 68 969 135 HOH HOH . H 4 HOH B 69 970 136 HOH HOH . H 4 HOH B 70 971 153 HOH HOH . H 4 HOH B 71 972 155 HOH HOH . H 4 HOH B 72 973 156 HOH HOH . H 4 HOH B 73 974 157 HOH HOH . H 4 HOH B 74 975 158 HOH HOH . H 4 HOH B 75 976 159 HOH HOH . H 4 HOH B 76 977 160 HOH HOH . H 4 HOH B 77 978 161 HOH HOH . H 4 HOH B 78 979 162 HOH HOH . H 4 HOH B 79 980 163 HOH HOH . H 4 HOH B 80 981 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMB . . . C 2 -2.256 -11.937 20.106 1 23.26 ? N1 FMB 900 A 1 HETATM 2 C C2 FMB . . . C 2 -3.359 -11.454 20.728 1 22.74 ? C2 FMB 900 A 1 HETATM 3 N N3 FMB . . . C 2 -4.442 -10.93 20.149 1 24.06 ? N3 FMB 900 A 1 HETATM 4 C C4 FMB . . . C 2 -4.335 -10.922 18.749 1 25.33 ? C4 FMB 900 A 1 HETATM 5 C C5 FMB . . . C 2 -3.215 -11.405 18.055 1 24.6 ? C5 FMB 900 A 1 HETATM 6 C C6 FMB . . . C 2 -2.136 -11.939 18.764 1 22.53 ? C6 FMB 900 A 1 HETATM 7 O O6 FMB . . . C 2 -1.078 -12.401 18.151 1 21.24 ? O6 FMB 900 A 1 HETATM 8 N N7 FMB . . . C 2 -3.438 -11.247 16.719 1 26.5 ? N7 FMB 900 A 1 HETATM 9 N N8 FMB . . . C 2 -4.665 -10.673 16.509 1 28.31 ? N8 FMB 900 A 1 HETATM 10 C C9 FMB . . . C 2 -5.236 -10.463 17.715 1 27.37 ? C9 FMB 900 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #