data_1TCC # _model_server_result.job_id B6hulMy5gk1HrgtuQekn7w _model_server_result.datetime_utc '2024-11-13 00:45:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1TCC # _exptl.entry_id 1TCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.1 _cell.angle_gamma 90 _cell.entry_id 1TCC _cell.length_a 67 _cell.length_b 50.5 _cell.length_c 86.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG ? 401 NAG 2 n C NAG 2 C 2 NAG ? 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 258 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 293 A CYS 293 1_555 A SG CYS 311 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 216 B CYS 216 1_555 B SG CYS 258 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 293 B CYS 293 1_555 B SG CYS 311 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 74 A ASN 74 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1TCC _atom_sites.fract_transf_matrix[1][1] 0.014925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BOG B 1 501 501 BOG BOG . E 4 HOH A 1 403 4 HOH HOH . E 4 HOH A 2 404 5 HOH HOH . E 4 HOH A 3 405 6 HOH HOH . E 4 HOH A 4 406 7 HOH HOH . E 4 HOH A 5 407 8 HOH HOH . E 4 HOH A 6 408 9 HOH HOH . E 4 HOH A 7 409 10 HOH HOH . E 4 HOH A 8 410 11 HOH HOH . E 4 HOH A 9 411 12 HOH HOH . E 4 HOH A 10 412 13 HOH HOH . E 4 HOH A 11 413 14 HOH HOH . E 4 HOH A 12 414 15 HOH HOH . E 4 HOH A 13 415 16 HOH HOH . E 4 HOH A 14 416 17 HOH HOH . E 4 HOH A 15 417 18 HOH HOH . E 4 HOH A 16 418 19 HOH HOH . E 4 HOH A 17 419 20 HOH HOH . E 4 HOH A 18 420 21 HOH HOH . E 4 HOH A 19 421 22 HOH HOH . E 4 HOH A 20 422 23 HOH HOH . E 4 HOH A 21 423 24 HOH HOH . E 4 HOH A 22 424 25 HOH HOH . E 4 HOH A 23 425 26 HOH HOH . E 4 HOH A 24 426 27 HOH HOH . E 4 HOH A 25 427 57 HOH HOH . E 4 HOH A 26 428 58 HOH HOH . E 4 HOH A 27 429 59 HOH HOH . E 4 HOH A 28 430 60 HOH HOH . E 4 HOH A 29 431 61 HOH HOH . E 4 HOH A 30 432 62 HOH HOH . E 4 HOH A 31 433 63 HOH HOH . E 4 HOH A 32 434 64 HOH HOH . E 4 HOH A 33 435 65 HOH HOH . E 4 HOH A 34 436 66 HOH HOH . E 4 HOH A 35 437 67 HOH HOH . E 4 HOH A 36 438 68 HOH HOH . E 4 HOH A 37 439 69 HOH HOH . E 4 HOH A 38 440 70 HOH HOH . E 4 HOH A 39 441 71 HOH HOH . E 4 HOH A 40 442 72 HOH HOH . E 4 HOH A 41 443 73 HOH HOH . E 4 HOH A 42 444 74 HOH HOH . E 4 HOH A 43 445 75 HOH HOH . E 4 HOH A 44 446 76 HOH HOH . E 4 HOH A 45 447 77 HOH HOH . E 4 HOH A 46 448 78 HOH HOH . E 4 HOH A 47 449 79 HOH HOH . E 4 HOH A 48 450 80 HOH HOH . E 4 HOH A 49 451 99 HOH HOH . E 4 HOH A 50 452 100 HOH HOH . E 4 HOH A 51 453 103 HOH HOH . E 4 HOH A 52 454 111 HOH HOH . E 4 HOH A 53 455 112 HOH HOH . E 4 HOH A 54 456 113 HOH HOH . E 4 HOH A 55 457 120 HOH HOH . E 4 HOH A 56 458 121 HOH HOH . E 4 HOH A 57 459 122 HOH HOH . E 4 HOH A 58 460 123 HOH HOH . E 4 HOH A 59 461 124 HOH HOH . E 4 HOH A 60 462 125 HOH HOH . E 4 HOH A 61 463 126 HOH HOH . E 4 HOH A 62 464 127 HOH HOH . E 4 HOH A 63 465 128 HOH HOH . E 4 HOH A 64 466 129 HOH HOH . E 4 HOH A 65 467 130 HOH HOH . E 4 HOH A 66 468 133 HOH HOH . E 4 HOH A 67 469 134 HOH HOH . E 4 HOH A 68 470 136 HOH HOH . E 4 HOH A 69 471 137 HOH HOH . E 4 HOH A 70 472 138 HOH HOH . E 4 HOH A 71 473 139 HOH HOH . E 4 HOH A 72 474 140 HOH HOH . E 4 HOH A 73 475 141 HOH HOH . E 4 HOH A 74 476 142 HOH HOH . E 4 HOH A 75 477 143 HOH HOH . E 4 HOH A 76 478 144 HOH HOH . E 4 HOH A 77 479 145 HOH HOH . E 4 HOH A 78 480 146 HOH HOH . E 4 HOH A 79 481 147 HOH HOH . E 4 HOH A 80 482 148 HOH HOH . E 4 HOH A 81 483 149 HOH HOH . E 4 HOH A 82 484 150 HOH HOH . E 4 HOH A 83 485 151 HOH HOH . E 4 HOH A 84 486 152 HOH HOH . E 4 HOH A 85 487 153 HOH HOH . E 4 HOH A 86 488 154 HOH HOH . E 4 HOH A 87 489 155 HOH HOH . E 4 HOH A 88 490 156 HOH HOH . E 4 HOH A 89 491 157 HOH HOH . E 4 HOH A 90 492 158 HOH HOH . E 4 HOH A 91 493 159 HOH HOH . F 4 HOH B 1 502 1 HOH HOH . F 4 HOH B 2 503 2 HOH HOH . F 4 HOH B 3 504 3 HOH HOH . F 4 HOH B 4 505 28 HOH HOH . F 4 HOH B 5 506 29 HOH HOH . F 4 HOH B 6 507 30 HOH HOH . F 4 HOH B 7 508 31 HOH HOH . F 4 HOH B 8 509 32 HOH HOH . F 4 HOH B 9 510 33 HOH HOH . F 4 HOH B 10 511 34 HOH HOH . F 4 HOH B 11 512 35 HOH HOH . F 4 HOH B 12 513 36 HOH HOH . F 4 HOH B 13 514 37 HOH HOH . F 4 HOH B 14 515 38 HOH HOH . F 4 HOH B 15 516 39 HOH HOH . F 4 HOH B 16 517 40 HOH HOH . F 4 HOH B 17 518 41 HOH HOH . F 4 HOH B 18 519 42 HOH HOH . F 4 HOH B 19 520 43 HOH HOH . F 4 HOH B 20 521 44 HOH HOH . F 4 HOH B 21 522 45 HOH HOH . F 4 HOH B 22 523 46 HOH HOH . F 4 HOH B 23 524 47 HOH HOH . F 4 HOH B 24 525 48 HOH HOH . F 4 HOH B 25 526 49 HOH HOH . F 4 HOH B 26 527 50 HOH HOH . F 4 HOH B 27 528 51 HOH HOH . F 4 HOH B 28 529 52 HOH HOH . F 4 HOH B 29 530 53 HOH HOH . F 4 HOH B 30 531 54 HOH HOH . F 4 HOH B 31 532 55 HOH HOH . F 4 HOH B 32 533 56 HOH HOH . F 4 HOH B 33 534 81 HOH HOH . F 4 HOH B 34 535 82 HOH HOH . F 4 HOH B 35 536 83 HOH HOH . F 4 HOH B 36 537 84 HOH HOH . F 4 HOH B 37 538 85 HOH HOH . F 4 HOH B 38 539 86 HOH HOH . F 4 HOH B 39 540 87 HOH HOH . F 4 HOH B 40 541 88 HOH HOH . F 4 HOH B 41 542 89 HOH HOH . F 4 HOH B 42 543 90 HOH HOH . F 4 HOH B 43 544 91 HOH HOH . F 4 HOH B 44 545 92 HOH HOH . F 4 HOH B 45 546 93 HOH HOH . F 4 HOH B 46 547 94 HOH HOH . F 4 HOH B 47 548 95 HOH HOH . F 4 HOH B 48 549 96 HOH HOH . F 4 HOH B 49 550 97 HOH HOH . F 4 HOH B 50 551 98 HOH HOH . F 4 HOH B 51 552 101 HOH HOH . F 4 HOH B 52 553 102 HOH HOH . F 4 HOH B 53 554 104 HOH HOH . F 4 HOH B 54 555 105 HOH HOH . F 4 HOH B 55 556 106 HOH HOH . F 4 HOH B 56 557 107 HOH HOH . F 4 HOH B 57 558 108 HOH HOH . F 4 HOH B 58 559 109 HOH HOH . F 4 HOH B 59 560 110 HOH HOH . F 4 HOH B 60 561 114 HOH HOH . F 4 HOH B 61 562 115 HOH HOH . F 4 HOH B 62 563 116 HOH HOH . F 4 HOH B 63 564 117 HOH HOH . F 4 HOH B 64 565 118 HOH HOH . F 4 HOH B 65 566 119 HOH HOH . F 4 HOH B 66 567 131 HOH HOH . F 4 HOH B 67 568 132 HOH HOH . F 4 HOH B 68 569 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 3 18.046 6.33 19.343 1 54.32 ? C1 BOG 501 B 1 HETATM 2 O O1 BOG . . . D 3 17.575 6.402 20.687 1 53.64 ? O1 BOG 501 B 1 HETATM 3 C C2 BOG . . . D 3 16.929 6.713 18.319 1 57.1 ? C2 BOG 501 B 1 HETATM 4 O O2 BOG . . . D 3 15.771 5.891 18.389 1 53.3 ? O2 BOG 501 B 1 HETATM 5 C C3 BOG . . . D 3 17.541 6.666 16.903 1 57.84 ? C3 BOG 501 B 1 HETATM 6 O O3 BOG . . . D 3 16.584 7.116 15.983 1 54.35 ? O3 BOG 501 B 1 HETATM 7 C C4 BOG . . . D 3 18.771 7.57 16.797 1 57.34 ? C4 BOG 501 B 1 HETATM 8 O O4 BOG . . . D 3 19.335 7.496 15.489 1 61.25 ? O4 BOG 501 B 1 HETATM 9 C C5 BOG . . . D 3 19.8 7.151 17.918 1 52.28 ? C5 BOG 501 B 1 HETATM 10 O O5 BOG . . . D 3 19.171 7.206 19.205 1 50.75 ? O5 BOG 501 B 1 HETATM 11 C C6 BOG . . . D 3 20.96 8.143 17.951 1 49.73 ? C6 BOG 501 B 1 HETATM 12 O O6 BOG . . . D 3 20.458 9.451 18.221 1 48.75 ? O6 BOG 501 B 1 HETATM 13 C C1' BOG . . . D 3 18.32 5.562 21.548 1 50.54 ? C1' BOG 501 B 1 HETATM 14 C C2' BOG . . . D 3 17.42 5.004 22.626 1 48.44 ? C2' BOG 501 B 1 HETATM 15 C C3' BOG . . . D 3 18.14 4.991 23.957 1 48.54 ? C3' BOG 501 B 1 HETATM 16 C C4' BOG . . . D 3 17.254 4.473 25.072 1 48.37 ? C4' BOG 501 B 1 HETATM 17 C C5' BOG . . . D 3 17.916 4.687 26.422 1 46.55 ? C5' BOG 501 B 1 HETATM 18 C C6' BOG . . . D 3 16.928 4.515 27.557 1 44.88 ? C6' BOG 501 B 1 HETATM 19 C C7' BOG . . . D 3 17.491 5.08 28.846 1 43.32 ? C7' BOG 501 B 1 HETATM 20 C C8' BOG . . . D 3 16.44 5.032 29.926 1 53.11 ? C8' BOG 501 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #