data_1TDI # _model_server_result.job_id MqPrWNKaQCFaRr_YnLZaZg _model_server_result.datetime_utc '2024-10-12 10:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":224}' # _entry.id 1TDI # _exptl.entry_id 1TDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.14 _cell.angle_gamma 90 _cell.entry_id 1TDI _cell.length_a 92.985 _cell.length_b 95.588 _cell.length_c 114.039 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 1TDI _atom_sites.fract_transf_matrix[1][1] 0.010754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 223 223 GSH GSH . D 2 GSH B 1 224 224 GSH GSH . E 3 HOH A 1 302 302 HOH TIP . E 3 HOH A 2 304 304 HOH TIP . E 3 HOH A 3 320 320 HOH TIP . E 3 HOH A 4 323 323 HOH TIP . E 3 HOH A 5 324 324 HOH TIP . E 3 HOH A 6 327 327 HOH TIP . E 3 HOH A 7 328 328 HOH TIP . E 3 HOH A 8 329 329 HOH TIP . E 3 HOH A 9 330 330 HOH TIP . E 3 HOH A 10 331 331 HOH TIP . E 3 HOH A 11 333 333 HOH TIP . E 3 HOH A 12 334 334 HOH TIP . E 3 HOH A 13 335 335 HOH TIP . E 3 HOH A 14 336 336 HOH TIP . E 3 HOH A 15 337 337 HOH TIP . E 3 HOH A 16 338 338 HOH TIP . E 3 HOH A 17 340 340 HOH TIP . E 3 HOH A 18 344 344 HOH TIP . E 3 HOH A 19 345 345 HOH TIP . E 3 HOH A 20 346 346 HOH TIP . E 3 HOH A 21 347 347 HOH TIP . E 3 HOH A 22 350 350 HOH TIP . E 3 HOH A 23 352 352 HOH TIP . E 3 HOH A 24 358 358 HOH TIP . E 3 HOH A 25 360 360 HOH TIP . E 3 HOH A 26 362 362 HOH TIP . E 3 HOH A 27 363 363 HOH TIP . E 3 HOH A 28 364 364 HOH TIP . E 3 HOH A 29 365 365 HOH TIP . E 3 HOH A 30 366 366 HOH TIP . E 3 HOH A 31 368 368 HOH TIP . E 3 HOH A 32 369 369 HOH TIP . E 3 HOH A 33 370 370 HOH TIP . E 3 HOH A 34 371 371 HOH TIP . E 3 HOH A 35 372 372 HOH TIP . E 3 HOH A 36 374 374 HOH TIP . E 3 HOH A 37 375 375 HOH TIP . E 3 HOH A 38 376 376 HOH TIP . E 3 HOH A 39 377 377 HOH TIP . E 3 HOH A 40 378 378 HOH TIP . E 3 HOH A 41 380 380 HOH TIP . E 3 HOH A 42 381 381 HOH TIP . E 3 HOH A 43 384 384 HOH TIP . E 3 HOH A 44 385 385 HOH TIP . E 3 HOH A 45 391 391 HOH TIP . E 3 HOH A 46 400 400 HOH TIP . E 3 HOH A 47 401 401 HOH TIP . E 3 HOH A 48 403 403 HOH TIP . E 3 HOH A 49 404 404 HOH TIP . E 3 HOH A 50 408 408 HOH TIP . E 3 HOH A 51 409 409 HOH TIP . E 3 HOH A 52 410 410 HOH TIP . E 3 HOH A 53 411 411 HOH TIP . E 3 HOH A 54 412 412 HOH TIP . E 3 HOH A 55 413 413 HOH TIP . E 3 HOH A 56 415 415 HOH TIP . E 3 HOH A 57 416 416 HOH TIP . E 3 HOH A 58 417 417 HOH TIP . E 3 HOH A 59 418 418 HOH TIP . E 3 HOH A 60 419 419 HOH TIP . E 3 HOH A 61 420 420 HOH TIP . E 3 HOH A 62 421 421 HOH TIP . E 3 HOH A 63 422 422 HOH TIP . E 3 HOH A 64 424 424 HOH TIP . E 3 HOH A 65 432 432 HOH TIP . E 3 HOH A 66 435 435 HOH TIP . E 3 HOH A 67 438 438 HOH TIP . E 3 HOH A 68 439 439 HOH TIP . E 3 HOH A 69 442 442 HOH TIP . E 3 HOH A 70 448 448 HOH TIP . E 3 HOH A 71 449 449 HOH TIP . E 3 HOH A 72 450 450 HOH TIP . E 3 HOH A 73 451 451 HOH TIP . E 3 HOH A 74 454 454 HOH TIP . E 3 HOH A 75 457 457 HOH TIP . E 3 HOH A 76 458 458 HOH TIP . E 3 HOH A 77 459 459 HOH TIP . E 3 HOH A 78 460 460 HOH TIP . E 3 HOH A 79 464 464 HOH TIP . E 3 HOH A 80 466 466 HOH TIP . E 3 HOH A 81 467 467 HOH TIP . E 3 HOH A 82 468 468 HOH TIP . E 3 HOH A 83 470 470 HOH TIP . E 3 HOH A 84 471 471 HOH TIP . E 3 HOH A 85 475 475 HOH TIP . E 3 HOH A 86 479 479 HOH TIP . E 3 HOH A 87 483 483 HOH TIP . E 3 HOH A 88 485 485 HOH TIP . E 3 HOH A 89 486 486 HOH TIP . E 3 HOH A 90 488 488 HOH TIP . E 3 HOH A 91 489 489 HOH TIP . E 3 HOH A 92 490 490 HOH TIP . E 3 HOH A 93 492 492 HOH TIP . E 3 HOH A 94 493 493 HOH TIP . E 3 HOH A 95 496 496 HOH TIP . E 3 HOH A 96 498 498 HOH TIP . E 3 HOH A 97 500 500 HOH TIP . E 3 HOH A 98 501 501 HOH TIP . E 3 HOH A 99 502 502 HOH TIP . E 3 HOH A 100 503 503 HOH TIP . E 3 HOH A 101 504 504 HOH TIP . E 3 HOH A 102 505 505 HOH TIP . E 3 HOH A 103 507 507 HOH TIP . E 3 HOH A 104 508 508 HOH TIP . E 3 HOH A 105 509 509 HOH TIP . E 3 HOH A 106 510 510 HOH TIP . E 3 HOH A 107 511 511 HOH TIP . E 3 HOH A 108 512 512 HOH TIP . E 3 HOH A 109 513 513 HOH TIP . E 3 HOH A 110 518 518 HOH TIP . E 3 HOH A 111 520 520 HOH TIP . E 3 HOH A 112 525 525 HOH TIP . E 3 HOH A 113 527 527 HOH TIP . E 3 HOH A 114 529 529 HOH TIP . E 3 HOH A 115 531 531 HOH TIP . E 3 HOH A 116 534 534 HOH TIP . E 3 HOH A 117 536 536 HOH TIP . E 3 HOH A 118 538 538 HOH TIP . E 3 HOH A 119 539 539 HOH TIP . E 3 HOH A 120 542 542 HOH TIP . E 3 HOH A 121 543 543 HOH TIP . E 3 HOH A 122 544 544 HOH TIP . E 3 HOH A 123 545 545 HOH TIP . E 3 HOH A 124 546 546 HOH TIP . E 3 HOH A 125 547 547 HOH TIP . E 3 HOH A 126 550 550 HOH TIP . E 3 HOH A 127 558 558 HOH TIP . E 3 HOH A 128 560 560 HOH TIP . E 3 HOH A 129 561 561 HOH TIP . E 3 HOH A 130 562 562 HOH TIP . E 3 HOH A 131 563 563 HOH TIP . E 3 HOH A 132 564 564 HOH TIP . E 3 HOH A 133 566 566 HOH TIP . E 3 HOH A 134 567 567 HOH TIP . E 3 HOH A 135 568 568 HOH TIP . E 3 HOH A 136 569 569 HOH TIP . E 3 HOH A 137 570 570 HOH TIP . E 3 HOH A 138 571 571 HOH TIP . F 3 HOH B 1 301 301 HOH TIP . F 3 HOH B 2 303 303 HOH TIP . F 3 HOH B 3 305 305 HOH TIP . F 3 HOH B 4 306 306 HOH TIP . F 3 HOH B 5 307 307 HOH TIP . F 3 HOH B 6 308 308 HOH TIP . F 3 HOH B 7 309 309 HOH TIP . F 3 HOH B 8 310 310 HOH TIP . F 3 HOH B 9 311 311 HOH TIP . F 3 HOH B 10 312 312 HOH TIP . F 3 HOH B 11 313 313 HOH TIP . F 3 HOH B 12 314 314 HOH TIP . F 3 HOH B 13 315 315 HOH TIP . F 3 HOH B 14 316 316 HOH TIP . F 3 HOH B 15 317 317 HOH TIP . F 3 HOH B 16 318 318 HOH TIP . F 3 HOH B 17 319 319 HOH TIP . F 3 HOH B 18 321 321 HOH TIP . F 3 HOH B 19 322 322 HOH TIP . F 3 HOH B 20 325 325 HOH TIP . F 3 HOH B 21 326 326 HOH TIP . F 3 HOH B 22 332 332 HOH TIP . F 3 HOH B 23 339 339 HOH TIP . F 3 HOH B 24 341 341 HOH TIP . F 3 HOH B 25 342 342 HOH TIP . F 3 HOH B 26 343 343 HOH TIP . F 3 HOH B 27 348 348 HOH TIP . F 3 HOH B 28 349 349 HOH TIP . F 3 HOH B 29 351 351 HOH TIP . F 3 HOH B 30 353 353 HOH TIP . F 3 HOH B 31 354 354 HOH TIP . F 3 HOH B 32 355 355 HOH TIP . F 3 HOH B 33 356 356 HOH TIP . F 3 HOH B 34 357 357 HOH TIP . F 3 HOH B 35 359 359 HOH TIP . F 3 HOH B 36 361 361 HOH TIP . F 3 HOH B 37 367 367 HOH TIP . F 3 HOH B 38 373 373 HOH TIP . F 3 HOH B 39 379 379 HOH TIP . F 3 HOH B 40 382 382 HOH TIP . F 3 HOH B 41 383 383 HOH TIP . F 3 HOH B 42 386 386 HOH TIP . F 3 HOH B 43 387 387 HOH TIP . F 3 HOH B 44 388 388 HOH TIP . F 3 HOH B 45 389 389 HOH TIP . F 3 HOH B 46 390 390 HOH TIP . F 3 HOH B 47 392 392 HOH TIP . F 3 HOH B 48 393 393 HOH TIP . F 3 HOH B 49 394 394 HOH TIP . F 3 HOH B 50 395 395 HOH TIP . F 3 HOH B 51 396 396 HOH TIP . F 3 HOH B 52 397 397 HOH TIP . F 3 HOH B 53 398 398 HOH TIP . F 3 HOH B 54 399 399 HOH TIP . F 3 HOH B 55 402 402 HOH TIP . F 3 HOH B 56 405 405 HOH TIP . F 3 HOH B 57 406 406 HOH TIP . F 3 HOH B 58 407 407 HOH TIP . F 3 HOH B 59 414 414 HOH TIP . F 3 HOH B 60 423 423 HOH TIP . F 3 HOH B 61 425 425 HOH TIP . F 3 HOH B 62 426 426 HOH TIP . F 3 HOH B 63 427 427 HOH TIP . F 3 HOH B 64 428 428 HOH TIP . F 3 HOH B 65 429 429 HOH TIP . F 3 HOH B 66 430 430 HOH TIP . F 3 HOH B 67 431 431 HOH TIP . F 3 HOH B 68 433 433 HOH TIP . F 3 HOH B 69 434 434 HOH TIP . F 3 HOH B 70 436 436 HOH TIP . F 3 HOH B 71 437 437 HOH TIP . F 3 HOH B 72 440 440 HOH TIP . F 3 HOH B 73 441 441 HOH TIP . F 3 HOH B 74 443 443 HOH TIP . F 3 HOH B 75 444 444 HOH TIP . F 3 HOH B 76 445 445 HOH TIP . F 3 HOH B 77 446 446 HOH TIP . F 3 HOH B 78 447 447 HOH TIP . F 3 HOH B 79 452 452 HOH TIP . F 3 HOH B 80 453 453 HOH TIP . F 3 HOH B 81 455 455 HOH TIP . F 3 HOH B 82 456 456 HOH TIP . F 3 HOH B 83 461 461 HOH TIP . F 3 HOH B 84 462 462 HOH TIP . F 3 HOH B 85 463 463 HOH TIP . F 3 HOH B 86 465 465 HOH TIP . F 3 HOH B 87 469 469 HOH TIP . F 3 HOH B 88 472 472 HOH TIP . F 3 HOH B 89 473 473 HOH TIP . F 3 HOH B 90 474 474 HOH TIP . F 3 HOH B 91 476 476 HOH TIP . F 3 HOH B 92 477 477 HOH TIP . F 3 HOH B 93 478 478 HOH TIP . F 3 HOH B 94 480 480 HOH TIP . F 3 HOH B 95 481 481 HOH TIP . F 3 HOH B 96 482 482 HOH TIP . F 3 HOH B 97 484 484 HOH TIP . F 3 HOH B 98 487 487 HOH TIP . F 3 HOH B 99 491 491 HOH TIP . F 3 HOH B 100 494 494 HOH TIP . F 3 HOH B 101 495 495 HOH TIP . F 3 HOH B 102 497 497 HOH TIP . F 3 HOH B 103 499 499 HOH TIP . F 3 HOH B 104 506 506 HOH TIP . F 3 HOH B 105 514 514 HOH TIP . F 3 HOH B 106 515 515 HOH TIP . F 3 HOH B 107 516 516 HOH TIP . F 3 HOH B 108 517 517 HOH TIP . F 3 HOH B 109 519 519 HOH TIP . F 3 HOH B 110 521 521 HOH TIP . F 3 HOH B 111 522 522 HOH TIP . F 3 HOH B 112 523 523 HOH TIP . F 3 HOH B 113 524 524 HOH TIP . F 3 HOH B 114 526 526 HOH TIP . F 3 HOH B 115 528 528 HOH TIP . F 3 HOH B 116 530 530 HOH TIP . F 3 HOH B 117 532 532 HOH TIP . F 3 HOH B 118 533 533 HOH TIP . F 3 HOH B 119 535 535 HOH TIP . F 3 HOH B 120 537 537 HOH TIP . F 3 HOH B 121 540 540 HOH TIP . F 3 HOH B 122 541 541 HOH TIP . F 3 HOH B 123 548 548 HOH TIP . F 3 HOH B 124 549 549 HOH TIP . F 3 HOH B 125 551 551 HOH TIP . F 3 HOH B 126 552 552 HOH TIP . F 3 HOH B 127 553 553 HOH TIP . F 3 HOH B 128 554 554 HOH TIP . F 3 HOH B 129 555 555 HOH TIP . F 3 HOH B 130 556 556 HOH TIP . F 3 HOH B 131 557 557 HOH TIP . F 3 HOH B 132 559 559 HOH TIP . F 3 HOH B 133 565 565 HOH TIP . F 3 HOH B 134 572 572 HOH TIP . F 3 HOH B 135 573 573 HOH TIP . F 3 HOH B 136 574 574 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 2 13.462 -5.303 46.918 1 27.82 ? N1 GSH 224 B 1 HETATM 2 C CA1 GSH . . . D 2 13.434 -6.397 48.023 1 23.86 ? CA1 GSH 224 B 1 HETATM 3 C C1 GSH . . . D 2 12.337 -6.126 48.998 1 22.26 ? C1 GSH 224 B 1 HETATM 4 O O11 GSH . . . D 2 11.806 -6.907 49.841 1 26.18 ? O11 GSH 224 B 1 HETATM 5 O O12 GSH . . . D 2 11.727 -4.876 49.093 1 24.09 ? O12 GSH 224 B 1 HETATM 6 C CB1 GSH . . . D 2 14.886 -6.231 48.653 1 25.23 ? CB1 GSH 224 B 1 HETATM 7 C CG1 GSH . . . D 2 15.181 -7.495 49.482 1 24.25 ? CG1 GSH 224 B 1 HETATM 8 C CD1 GSH . . . D 2 16.606 -7.576 49.973 1 24.72 ? CD1 GSH 224 B 1 HETATM 9 O OE1 GSH . . . D 2 17.616 -6.962 49.486 1 27.03 ? OE1 GSH 224 B 1 HETATM 10 N N2 GSH . . . D 2 16.797 -8.432 51.066 1 28.08 ? N2 GSH 224 B 1 HETATM 11 C CA2 GSH . . . D 2 18.199 -8.579 51.586 1 23.94 ? CA2 GSH 224 B 1 HETATM 12 C C2 GSH . . . D 2 18.642 -10.083 51.26 1 26.5 ? C2 GSH 224 B 1 HETATM 13 O O2 GSH . . . D 2 17.748 -10.876 51.554 1 20.26 ? O2 GSH 224 B 1 HETATM 14 C CB2 GSH . . . D 2 18.206 -8.327 53.12 1 32.81 ? CB2 GSH 224 B 1 HETATM 15 S SG2 GSH . . . D 2 17.902 -6.576 53.293 1 38.22 ? SG2 GSH 224 B 1 HETATM 16 N N3 GSH . . . D 2 19.87 -10.177 50.745 1 33.19 ? N3 GSH 224 B 1 HETATM 17 C CA3 GSH . . . D 2 20.479 -11.494 50.384 1 32.39 ? CA3 GSH 224 B 1 HETATM 18 C C3 GSH . . . D 2 20.577 -11.66 48.868 1 36.17 ? C3 GSH 224 B 1 HETATM 19 O O31 GSH . . . D 2 20.827 -12.809 48.368 1 38.12 ? O31 GSH 224 B 1 HETATM 20 O O32 GSH . . . D 2 20.391 -10.545 48.145 1 34.97 ? O32 GSH 224 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #