data_1TDN # _model_server_result.job_id OTvOgaRnx_KfyiOeV6XimA _model_server_result.datetime_utc '2024-10-16 10:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":487}' # _entry.id 1TDN # _exptl.entry_id 1TDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TDN _cell.length_a 169.53 _cell.length_b 169.53 _cell.length_c 169.53 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 331 A CYS 331 1_555 A SG CYS 412 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 172 A ASN 172 1_555 B C1 NAG . A NAG 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 361 A ASN 361 1_555 C C1 NAG . A NAG 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 264 n n N H LEU sing 265 n n N H2 LEU sing 266 n n CA C LEU sing 267 n n CA CB LEU sing 268 n n CA HA LEU sing 269 n n C O LEU doub 270 n n C OXT LEU sing 271 n n CB CG LEU sing 272 n n CB HB2 LEU sing 273 n n CB HB3 LEU sing 274 n n CG CD1 LEU sing 275 n n CG CD2 LEU sing 276 n n CG HG LEU sing 277 n n CD1 HD11 LEU sing 278 n n CD1 HD12 LEU sing 279 n n CD1 HD13 LEU sing 280 n n CD2 HD21 LEU sing 281 n n CD2 HD22 LEU sing 282 n n CD2 HD23 LEU sing 283 n n OXT HXT LEU sing 284 n n # _atom_sites.entry_id 1TDN _atom_sites.fract_transf_matrix[1][1] 0.005899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 489 489 NAG NAG . C 2 NAG A 1 490 490 NAG NAG . D 3 FAD A 1 488 488 FAD FAD . E 4 LEU A 1 487 487 LEU LLE . F 5 HOH A 1 491 1 HOH TIP . F 5 HOH A 2 492 2 HOH TIP . F 5 HOH A 3 493 3 HOH TIP . F 5 HOH A 4 494 4 HOH TIP . F 5 HOH A 5 495 5 HOH TIP . F 5 HOH A 6 496 6 HOH TIP . F 5 HOH A 7 497 7 HOH TIP . F 5 HOH A 8 498 8 HOH TIP . F 5 HOH A 9 499 9 HOH TIP . F 5 HOH A 10 500 10 HOH TIP . F 5 HOH A 11 501 11 HOH TIP . F 5 HOH A 12 502 12 HOH TIP . F 5 HOH A 13 503 13 HOH TIP . F 5 HOH A 14 504 14 HOH TIP . F 5 HOH A 15 505 15 HOH TIP . F 5 HOH A 16 506 16 HOH TIP . F 5 HOH A 17 507 17 HOH TIP . F 5 HOH A 18 508 18 HOH TIP . F 5 HOH A 19 509 19 HOH TIP . F 5 HOH A 20 510 20 HOH TIP . F 5 HOH A 21 511 21 HOH TIP . F 5 HOH A 22 512 22 HOH TIP . F 5 HOH A 23 513 23 HOH TIP . F 5 HOH A 24 514 24 HOH TIP . F 5 HOH A 25 515 25 HOH TIP . F 5 HOH A 26 516 26 HOH TIP . F 5 HOH A 27 517 27 HOH TIP . F 5 HOH A 28 518 28 HOH TIP . F 5 HOH A 29 519 29 HOH TIP . F 5 HOH A 30 520 30 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . E 4 94.473 284.412 220.849 1 72.21 ? N LEU 487 A 1 HETATM 2 C CA LEU . . . E 4 95.964 284.574 220.793 1 71.59 ? CA LEU 487 A 1 HETATM 3 C C LEU . . . E 4 96.539 283.235 220.302 1 72.14 ? C LEU 487 A 1 HETATM 4 O O LEU . . . E 4 96.607 283.093 219.037 1 72.39 ? O LEU 487 A 1 HETATM 5 C CB LEU . . . E 4 96.578 284.937 222.224 1 70.91 ? CB LEU 487 A 1 HETATM 6 C CG LEU . . . E 4 97.208 286.343 222.602 1 71 ? CG LEU 487 A 1 HETATM 7 C CD1 LEU . . . E 4 98.361 286.192 223.704 1 66.24 ? CD1 LEU 487 A 1 HETATM 8 C CD2 LEU . . . E 4 97.768 287.033 221.299 1 71.26 ? CD2 LEU 487 A 1 HETATM 9 O OXT LEU . . . E 4 96.873 282.294 221.081 1 72.1 ? OXT LEU 487 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #