data_1TDN
#
_model_server_result.job_id            6rQayE3WJVypLdRzKnGwSg 
_model_server_result.datetime_utc      '2024-10-16 10:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":488}' 
#
_entry.id    1TDN 
#
_exptl.entry_id    1TDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TDN 
_cell.length_a            169.53 
_cell.length_b            169.53 
_cell.length_c            169.53 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 331 A CYS 331 1_555 A SG CYS 412 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A ND2 ASN 172 A ASN 172 1_555 B C1 NAG . A NAG 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 361 A ASN 361 1_555 C C1 NAG . A NAG 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1TDN 
_atom_sites.fract_transf_matrix[1][1]    0.005899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 489 489 NAG NAG . 
C 2 NAG A 1 490 490 NAG NAG . 
D 3 FAD A 1 488 488 FAD FAD . 
E 4 LEU A 1 487 487 LEU LLE . 
F 5 HOH A 1 491 1 HOH TIP . 
F 5 HOH A 2 492 2 HOH TIP . 
F 5 HOH A 3 493 3 HOH TIP . 
F 5 HOH A 4 494 4 HOH TIP . 
F 5 HOH A 5 495 5 HOH TIP . 
F 5 HOH A 6 496 6 HOH TIP . 
F 5 HOH A 7 497 7 HOH TIP . 
F 5 HOH A 8 498 8 HOH TIP . 
F 5 HOH A 9 499 9 HOH TIP . 
F 5 HOH A 10 500 10 HOH TIP . 
F 5 HOH A 11 501 11 HOH TIP . 
F 5 HOH A 12 502 12 HOH TIP . 
F 5 HOH A 13 503 13 HOH TIP . 
F 5 HOH A 14 504 14 HOH TIP . 
F 5 HOH A 15 505 15 HOH TIP . 
F 5 HOH A 16 506 16 HOH TIP . 
F 5 HOH A 17 507 17 HOH TIP . 
F 5 HOH A 18 508 18 HOH TIP . 
F 5 HOH A 19 509 19 HOH TIP . 
F 5 HOH A 20 510 20 HOH TIP . 
F 5 HOH A 21 511 21 HOH TIP . 
F 5 HOH A 22 512 22 HOH TIP . 
F 5 HOH A 23 513 23 HOH TIP . 
F 5 HOH A 24 514 24 HOH TIP . 
F 5 HOH A 25 515 25 HOH TIP . 
F 5 HOH A 26 516 26 HOH TIP . 
F 5 HOH A 27 517 27 HOH TIP . 
F 5 HOH A 28 518 28 HOH TIP . 
F 5 HOH A 29 519 29 HOH TIP . 
F 5 HOH A 30 520 30 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 3 83.448 278.58 214.024 1 37.96 ? PA FAD 488 A 1 
HETATM 2 O O1A FAD . . . D 3 84.328 278.207 212.916 1 38.27 ? O1A FAD 488 A 1 
HETATM 3 O O2A FAD . . . D 3 83.561 279.816 214.508 1 40.27 ? O2A FAD 488 A 1 
HETATM 4 O O5B FAD . . . D 3 82.054 278.483 213.332 1 40.37 ? O5B FAD 488 A 1 
HETATM 5 C C5B FAD . . . D 3 81.526 277.237 212.746 1 38.95 ? C5B FAD 488 A 1 
HETATM 6 C C4B FAD . . . D 3 80.868 277.439 211.343 1 36.95 ? C4B FAD 488 A 1 
HETATM 7 O O4B FAD . . . D 3 79.567 278.087 211.457 1 35.21 ? O4B FAD 488 A 1 
HETATM 8 C C3B FAD . . . D 3 81.624 278.244 210.315 1 36.53 ? C3B FAD 488 A 1 
HETATM 9 O O3B FAD . . . D 3 82.398 277.487 209.447 1 37.57 ? O3B FAD 488 A 1 
HETATM 10 C C2B FAD . . . D 3 80.517 279.116 209.698 1 36.67 ? C2B FAD 488 A 1 
HETATM 11 O O2B FAD . . . D 3 80.613 279.309 208.318 1 37.4 ? O2B FAD 488 A 1 
HETATM 12 C C1B FAD . . . D 3 79.308 278.325 210.036 1 35.98 ? C1B FAD 488 A 1 
HETATM 13 N N9A FAD . . . D 3 78.016 279.027 209.962 1 37.42 ? N9A FAD 488 A 1 
HETATM 14 C C8A FAD . . . D 3 77.707 280.302 210.414 1 37.1 ? C8A FAD 488 A 1 
HETATM 15 N N7A FAD . . . D 3 76.429 280.644 210.186 1 35.61 ? N7A FAD 488 A 1 
HETATM 16 C C5A FAD . . . D 3 75.876 279.553 209.557 1 35.72 ? C5A FAD 488 A 1 
HETATM 17 C C6A FAD . . . D 3 74.508 279.286 209.043 1 35.19 ? C6A FAD 488 A 1 
HETATM 18 N N6A FAD . . . D 3 73.509 280.124 209.112 1 30.85 ? N6A FAD 488 A 1 
HETATM 19 N N1A FAD . . . D 3 74.345 278.042 208.462 1 36.53 ? N1A FAD 488 A 1 
HETATM 20 C C2A FAD . . . D 3 75.359 277.123 208.365 1 36.32 ? C2A FAD 488 A 1 
HETATM 21 N N3A FAD . . . D 3 76.63 277.278 208.804 1 35.38 ? N3A FAD 488 A 1 
HETATM 22 C C4A FAD . . . D 3 76.847 278.507 209.395 1 36.77 ? C4A FAD 488 A 1 
HETATM 23 N N1 FAD . . . D 3 92.644 278.51 219.11 1 48.2 ? N1 FAD 488 A 1 
HETATM 24 C C2 FAD . . . D 3 93.72 277.765 219.443 1 48.05 ? C2 FAD 488 A 1 
HETATM 25 O O2 FAD . . . D 3 93.616 276.697 219.957 1 49.22 ? O2 FAD 488 A 1 
HETATM 26 N N3 FAD . . . D 3 95.057 278.21 219.201 1 47.53 ? N3 FAD 488 A 1 
HETATM 27 C C4 FAD . . . D 3 95.318 279.431 218.611 1 46.25 ? C4 FAD 488 A 1 
HETATM 28 O O4 FAD . . . D 3 96.47 279.778 218.422 1 45.54 ? O4 FAD 488 A 1 
HETATM 29 C C4X FAD . . . D 3 94.172 280.24 218.24 1 45.02 ? C4X FAD 488 A 1 
HETATM 30 N N5 FAD . . . D 3 94.383 281.439 217.649 1 45.75 ? N5 FAD 488 A 1 
HETATM 31 C C5X FAD . . . D 3 93.291 282.191 217.288 1 43.3 ? C5X FAD 488 A 1 
HETATM 32 C C6 FAD . . . D 3 93.531 283.45 216.654 1 42.1 ? C6 FAD 488 A 1 
HETATM 33 C C7 FAD . . . D 3 92.49 284.261 216.252 1 41.01 ? C7 FAD 488 A 1 
HETATM 34 C C7M FAD . . . D 3 92.784 285.579 215.589 1 40.91 ? C7M FAD 488 A 1 
HETATM 35 C C8 FAD . . . D 3 91.104 283.831 216.471 1 41.54 ? C8 FAD 488 A 1 
HETATM 36 C C8M FAD . . . D 3 89.914 284.656 216.048 1 41.38 ? C8M FAD 488 A 1 
HETATM 37 C C9 FAD . . . D 3 90.863 282.598 217.102 1 42.47 ? C9 FAD 488 A 1 
HETATM 38 C C9A FAD . . . D 3 91.936 281.775 217.512 1 43.03 ? C9A FAD 488 A 1 
HETATM 39 N N10 FAD . . . D 3 91.742 280.489 218.164 1 43.23 ? N10 FAD 488 A 1 
HETATM 40 C C10 FAD . . . D 3 92.811 279.723 218.519 1 45.04 ? C10 FAD 488 A 1 
HETATM 41 C C1' FAD . . . D 3 90.329 280.118 218.393 1 41.49 ? C1' FAD 488 A 1 
HETATM 42 C C2' FAD . . . D 3 89.726 279.023 217.508 1 41.78 ? C2' FAD 488 A 1 
HETATM 43 O O2' FAD . . . D 3 89.933 279.398 216.147 1 42.49 ? O2' FAD 488 A 1 
HETATM 44 C C3' FAD . . . D 3 88.227 278.971 217.893 1 42.48 ? C3' FAD 488 A 1 
HETATM 45 O O3' FAD . . . D 3 88.063 278.628 219.276 1 38.55 ? O3' FAD 488 A 1 
HETATM 46 C C4' FAD . . . D 3 87.435 277.932 217.088 1 41.72 ? C4' FAD 488 A 1 
HETATM 47 O O4' FAD . . . D 3 87.536 278.136 215.665 1 44.27 ? O4' FAD 488 A 1 
HETATM 48 C C5' FAD . . . D 3 85.982 278.03 217.532 1 41.14 ? C5' FAD 488 A 1 
HETATM 49 O O5' FAD . . . D 3 85.163 276.963 216.706 1 41.22 ? O5' FAD 488 A 1 
HETATM 50 P P FAD . . . D 3 83.684 277.092 216.457 1 43.56 ? P FAD 488 A 1 
HETATM 51 O O1P FAD . . . D 3 83.198 275.649 216.745 1 45.84 ? O1P FAD 488 A 1 
HETATM 52 O O2P FAD . . . D 3 83.022 278.085 217.162 1 45.9 ? O2P FAD 488 A 1 
HETATM 53 O O3P FAD . . . D 3 83.515 277.387 215.044 1 42.63 ? O3P FAD 488 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#