data_1TDN
#
_model_server_result.job_id            rbK_YC-9Ca2D6t6EI25ggg 
_model_server_result.datetime_utc      '2024-10-16 10:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":490}' 
#
_entry.id    1TDN 
#
_exptl.entry_id    1TDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TDN 
_cell.length_a            169.53 
_cell.length_b            169.53 
_cell.length_c            169.53 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 331 A CYS 331 1_555 A SG CYS 412 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A ND2 ASN 172 A ASN 172 1_555 B C1 NAG . A NAG 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 361 A ASN 361 1_555 C C1 NAG . A NAG 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 328 n n 
C1 O1 NAG sing 329 n n 
C1 O5 NAG sing 330 n n 
C1 H1 NAG sing 331 n n 
C2 C3 NAG sing 332 n n 
C2 N2 NAG sing 333 n n 
C2 H2 NAG sing 334 n n 
C3 C4 NAG sing 335 n n 
C3 O3 NAG sing 336 n n 
C3 H3 NAG sing 337 n n 
C4 C5 NAG sing 338 n n 
C4 O4 NAG sing 339 n n 
C4 H4 NAG sing 340 n n 
C5 C6 NAG sing 341 n n 
C5 O5 NAG sing 342 n n 
C5 H5 NAG sing 343 n n 
C6 O6 NAG sing 344 n n 
C6 H61 NAG sing 345 n n 
C6 H62 NAG sing 346 n n 
C7 C8 NAG sing 347 n n 
C7 N2 NAG sing 348 n n 
C7 O7 NAG doub 349 n n 
C8 H81 NAG sing 350 n n 
C8 H82 NAG sing 351 n n 
C8 H83 NAG sing 352 n n 
N2 HN2 NAG sing 353 n n 
O1 HO1 NAG sing 354 n n 
O3 HO3 NAG sing 355 n n 
O4 HO4 NAG sing 356 n n 
O6 HO6 NAG sing 357 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1TDN 
_atom_sites.fract_transf_matrix[1][1]    0.005899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 489 489 NAG NAG . 
C 2 NAG A 1 490 490 NAG NAG . 
D 3 FAD A 1 488 488 FAD FAD . 
E 4 LEU A 1 487 487 LEU LLE . 
F 5 HOH A 1 491 1 HOH TIP . 
F 5 HOH A 2 492 2 HOH TIP . 
F 5 HOH A 3 493 3 HOH TIP . 
F 5 HOH A 4 494 4 HOH TIP . 
F 5 HOH A 5 495 5 HOH TIP . 
F 5 HOH A 6 496 6 HOH TIP . 
F 5 HOH A 7 497 7 HOH TIP . 
F 5 HOH A 8 498 8 HOH TIP . 
F 5 HOH A 9 499 9 HOH TIP . 
F 5 HOH A 10 500 10 HOH TIP . 
F 5 HOH A 11 501 11 HOH TIP . 
F 5 HOH A 12 502 12 HOH TIP . 
F 5 HOH A 13 503 13 HOH TIP . 
F 5 HOH A 14 504 14 HOH TIP . 
F 5 HOH A 15 505 15 HOH TIP . 
F 5 HOH A 16 506 16 HOH TIP . 
F 5 HOH A 17 507 17 HOH TIP . 
F 5 HOH A 18 508 18 HOH TIP . 
F 5 HOH A 19 509 19 HOH TIP . 
F 5 HOH A 20 510 20 HOH TIP . 
F 5 HOH A 21 511 21 HOH TIP . 
F 5 HOH A 22 512 22 HOH TIP . 
F 5 HOH A 23 513 23 HOH TIP . 
F 5 HOH A 24 514 24 HOH TIP . 
F 5 HOH A 25 515 25 HOH TIP . 
F 5 HOH A 26 516 26 HOH TIP . 
F 5 HOH A 27 517 27 HOH TIP . 
F 5 HOH A 28 518 28 HOH TIP . 
F 5 HOH A 29 519 29 HOH TIP . 
F 5 HOH A 30 520 30 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 114.924 275.306 208.833 1 87.29 ? C1 NAG 490 A 1 
HETATM 2 C C2 NAG . . . C 2 115.279 274.964 210.303 1 90.26 ? C2 NAG 490 A 1 
HETATM 3 C C3 NAG . . . C 2 115.665 276.236 211.082 1 91.24 ? C3 NAG 490 A 1 
HETATM 4 C C4 NAG . . . C 2 116.811 276.929 210.356 1 91.41 ? C4 NAG 490 A 1 
HETATM 5 C C5 NAG . . . C 2 116.358 277.272 208.934 1 91.87 ? C5 NAG 490 A 1 
HETATM 6 C C6 NAG . . . C 2 117.457 277.958 208.135 1 92.93 ? C6 NAG 490 A 1 
HETATM 7 C C7 NAG . . . C 2 113.07 274.873 211.309 1 91.32 ? C7 NAG 490 A 1 
HETATM 8 C C8 NAG . . . C 2 113.069 275.672 212.608 1 90.72 ? C8 NAG 490 A 1 
HETATM 9 N N2 NAG . . . C 2 114.198 274.252 210.969 1 91.01 ? N2 NAG 490 A 1 
HETATM 10 O O3 NAG . . . C 2 116.063 275.906 212.407 1 92.09 ? O3 NAG 490 A 1 
HETATM 11 O O4 NAG . . . C 2 117.187 278.11 211.051 1 91.24 ? O4 NAG 490 A 1 
HETATM 12 O O5 NAG . . . C 2 115.988 276.064 208.211 1 90.54 ? O5 NAG 490 A 1 
HETATM 13 O O6 NAG . . . C 2 118.731 277.397 208.421 1 93.41 ? O6 NAG 490 A 1 
HETATM 14 O O7 NAG . . . C 2 112.044 274.809 210.629 1 91.45 ? O7 NAG 490 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#