data_1TDQ # _model_server_result.job_id 3LJG2BoGHxk0xRc1aYbnnw _model_server_result.datetime_utc '2025-04-24 06:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":128}' # _entry.id 1TDQ # _exptl.entry_id 1TDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TDQ _cell.length_a 112.52 _cell.length_b 86.42 _cell.length_c 57.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 35 B CYS 31 1_555 B SG CYS 127 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 B SG CYS 103 B CYS 99 1_555 B SG CYS 119 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 B OD1 ASP 68 B ASP 64 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 B OD2 ASP 68 B ASP 64 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 B OE2 GLU 72 B GLU 68 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc4 B OE1 GLU 72 B GLU 68 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 B OE1 GLU 72 B GLU 68 1_555 E CA CA . B CA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 B OE1 GLN 92 B GLN 88 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 B OD1 ASP 94 B ASP 90 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 B OD1 ASN 95 B ASN 91 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc9 B OE2 GLU 101 B GLU 97 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc10 B O GLU 101 B GLU 97 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc11 B OD1 ASP 102 B ASP 98 1_555 D CA CA . B CA 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc12 B OD1 ASP 102 B ASP 98 1_555 E CA CA . B CA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc13 B OD2 ASP 102 B ASP 98 1_555 E CA CA . B CA 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc14 B OD1 ASN 115 B ASN 111 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc15 B O ASP 116 B ASP 112 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc16 B OD1 ASP 116 B ASP 112 1_555 C CA CA . B CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc17 C CA CA . B CA 127 1_555 G O HOH . B HOH 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc18 E CA CA . B CA 129 1_555 G O HOH . B HOH 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc19 E CA CA . B CA 129 1_555 G O HOH . B HOH 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc20 E CA CA . B CA 129 1_555 G O HOH . B HOH 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc21 E CA CA . B CA 129 1_555 G O HOH . B HOH 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TDQ _atom_sites.fract_transf_matrix[1][1] 0.008887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 127 1 CA CA . D 3 CA B 1 128 2 CA CA . E 3 CA B 1 129 3 CA CA . F 4 HOH A 1 273 4 HOH HOH . F 4 HOH A 2 274 5 HOH HOH . F 4 HOH A 3 275 6 HOH HOH . F 4 HOH A 4 276 21 HOH HOH . F 4 HOH A 5 277 28 HOH HOH . F 4 HOH A 6 278 30 HOH HOH . F 4 HOH A 7 279 31 HOH HOH . F 4 HOH A 8 280 33 HOH HOH . F 4 HOH A 9 281 34 HOH HOH . F 4 HOH A 10 282 35 HOH HOH . G 4 HOH B 1 130 1 HOH HOH . G 4 HOH B 2 131 2 HOH HOH . G 4 HOH B 3 132 3 HOH HOH . G 4 HOH B 4 133 7 HOH HOH . G 4 HOH B 5 134 8 HOH HOH . G 4 HOH B 6 135 9 HOH HOH . G 4 HOH B 7 136 10 HOH HOH . G 4 HOH B 8 137 11 HOH HOH . G 4 HOH B 9 138 12 HOH HOH . G 4 HOH B 10 139 13 HOH HOH . G 4 HOH B 11 140 14 HOH HOH . G 4 HOH B 12 141 15 HOH HOH . G 4 HOH B 13 142 16 HOH HOH . G 4 HOH B 14 143 17 HOH HOH . G 4 HOH B 15 144 18 HOH HOH . G 4 HOH B 16 145 19 HOH HOH . G 4 HOH B 17 146 20 HOH HOH . G 4 HOH B 18 147 22 HOH HOH . G 4 HOH B 19 148 23 HOH HOH . G 4 HOH B 20 149 24 HOH HOH . G 4 HOH B 21 150 25 HOH HOH . G 4 HOH B 22 151 26 HOH HOH . G 4 HOH B 23 152 27 HOH HOH . G 4 HOH B 24 153 29 HOH HOH . G 4 HOH B 25 154 32 HOH HOH . G 4 HOH B 26 155 36 HOH HOH . G 4 HOH B 27 156 37 HOH HOH . G 4 HOH B 28 157 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.009 _atom_site.Cartn_y -6.608 _atom_site.Cartn_z 101.792 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 128 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #