data_1TDU # _model_server_result.job_id U6yrdYigdtrXUBphtlErJw _model_server_result.datetime_utc '2024-10-19 05:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 1TDU # _exptl.entry_id 1TDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TDU _cell.length_a 127.299 _cell.length_b 127.299 _cell.length_c 67.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A O1 FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? covale ? covale3 B C FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B O2 FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TDU _atom_sites.fract_transf_matrix[1][1] 0.007856 _atom_sites.fract_transf_matrix[1][2] 0.004535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 300 300 PO4 PO4 . D 3 DUR A 1 301 301 DUR DUR . E 4 CB3 A 1 302 302 CB3 CB3 . F 2 PO4 B 1 300 300 PO4 PO4 . G 3 DUR B 1 301 301 DUR DUR . H 4 CB3 B 1 302 302 CB3 CB3 . I 5 HOH A 1 750 750 HOH HOH . I 5 HOH A 2 753 753 HOH HOH . I 5 HOH A 3 754 754 HOH HOH . I 5 HOH A 4 755 755 HOH HOH . I 5 HOH A 5 756 756 HOH HOH . I 5 HOH A 6 758 758 HOH HOH . I 5 HOH A 7 763 763 HOH HOH . I 5 HOH A 8 764 764 HOH HOH . I 5 HOH A 9 765 765 HOH HOH . I 5 HOH A 10 766 766 HOH HOH . I 5 HOH A 11 767 767 HOH HOH . I 5 HOH A 12 768 768 HOH HOH . I 5 HOH A 13 769 769 HOH HOH . I 5 HOH A 14 770 770 HOH HOH . I 5 HOH A 15 771 771 HOH HOH . I 5 HOH A 16 772 772 HOH HOH . I 5 HOH A 17 773 773 HOH HOH . I 5 HOH A 18 774 774 HOH HOH . I 5 HOH A 19 775 775 HOH HOH . I 5 HOH A 20 776 776 HOH HOH . I 5 HOH A 21 778 778 HOH HOH . I 5 HOH A 22 779 779 HOH HOH . I 5 HOH A 23 780 780 HOH HOH . I 5 HOH A 24 781 781 HOH HOH . I 5 HOH A 25 782 782 HOH HOH . I 5 HOH A 26 783 783 HOH HOH . I 5 HOH A 27 785 785 HOH HOH . I 5 HOH A 28 786 786 HOH HOH . I 5 HOH A 29 787 787 HOH HOH . I 5 HOH A 30 789 789 HOH HOH . I 5 HOH A 31 790 790 HOH HOH . I 5 HOH A 32 791 791 HOH HOH . I 5 HOH A 33 792 792 HOH HOH . I 5 HOH A 34 793 793 HOH HOH . I 5 HOH A 35 794 794 HOH HOH . I 5 HOH A 36 795 795 HOH HOH . I 5 HOH A 37 796 796 HOH HOH . I 5 HOH A 38 798 798 HOH HOH . I 5 HOH A 39 800 800 HOH HOH . I 5 HOH A 40 802 802 HOH HOH . I 5 HOH A 41 803 803 HOH HOH . I 5 HOH A 42 804 804 HOH HOH . I 5 HOH A 43 805 805 HOH HOH . I 5 HOH A 44 806 806 HOH HOH . I 5 HOH A 45 807 807 HOH HOH . I 5 HOH A 46 808 808 HOH HOH . I 5 HOH A 47 809 809 HOH HOH . I 5 HOH A 48 810 810 HOH HOH . I 5 HOH A 49 811 811 HOH HOH . I 5 HOH A 50 814 814 HOH HOH . I 5 HOH A 51 815 815 HOH HOH . I 5 HOH A 52 816 816 HOH HOH . I 5 HOH A 53 817 817 HOH HOH . I 5 HOH A 54 818 818 HOH HOH . I 5 HOH A 55 825 825 HOH HOH . I 5 HOH A 56 826 826 HOH HOH . I 5 HOH A 57 828 828 HOH HOH . I 5 HOH A 58 836 836 HOH HOH . I 5 HOH A 59 837 837 HOH HOH . I 5 HOH A 60 844 844 HOH HOH . I 5 HOH A 61 846 846 HOH HOH . I 5 HOH A 62 848 848 HOH HOH . I 5 HOH A 63 849 849 HOH HOH . I 5 HOH A 64 853 853 HOH HOH . I 5 HOH A 65 857 857 HOH HOH . I 5 HOH A 66 859 859 HOH HOH . I 5 HOH A 67 860 860 HOH HOH . I 5 HOH A 68 861 861 HOH HOH . I 5 HOH A 69 862 862 HOH HOH . I 5 HOH A 70 867 867 HOH HOH . I 5 HOH A 71 868 868 HOH HOH . I 5 HOH A 72 872 872 HOH HOH . I 5 HOH A 73 873 873 HOH HOH . I 5 HOH A 74 874 874 HOH HOH . I 5 HOH A 75 876 876 HOH HOH . I 5 HOH A 76 877 877 HOH HOH . I 5 HOH A 77 878 878 HOH HOH . I 5 HOH A 78 879 879 HOH HOH . I 5 HOH A 79 880 880 HOH HOH . I 5 HOH A 80 881 881 HOH HOH . I 5 HOH A 81 882 882 HOH HOH . I 5 HOH A 82 885 885 HOH HOH . I 5 HOH A 83 886 886 HOH HOH . I 5 HOH A 84 887 887 HOH HOH . I 5 HOH A 85 889 889 HOH HOH . I 5 HOH A 86 891 891 HOH HOH . I 5 HOH A 87 892 892 HOH HOH . I 5 HOH A 88 896 896 HOH HOH . I 5 HOH A 89 897 897 HOH HOH . I 5 HOH A 90 901 901 HOH HOH . I 5 HOH A 91 902 902 HOH HOH . I 5 HOH A 92 903 903 HOH HOH . I 5 HOH A 93 908 908 HOH HOH . I 5 HOH A 94 909 909 HOH HOH . J 5 HOH B 1 751 751 HOH HOH . J 5 HOH B 2 752 752 HOH HOH . J 5 HOH B 3 757 757 HOH HOH . J 5 HOH B 4 760 760 HOH HOH . J 5 HOH B 5 761 761 HOH HOH . J 5 HOH B 6 762 762 HOH HOH . J 5 HOH B 7 777 777 HOH HOH . J 5 HOH B 8 784 784 HOH HOH . J 5 HOH B 9 788 788 HOH HOH . J 5 HOH B 10 799 799 HOH HOH . J 5 HOH B 11 812 812 HOH HOH . J 5 HOH B 12 813 813 HOH HOH . J 5 HOH B 13 819 819 HOH HOH . J 5 HOH B 14 820 820 HOH HOH . J 5 HOH B 15 821 821 HOH HOH . J 5 HOH B 16 822 822 HOH HOH . J 5 HOH B 17 823 823 HOH HOH . J 5 HOH B 18 824 824 HOH HOH . J 5 HOH B 19 827 827 HOH HOH . J 5 HOH B 20 829 829 HOH HOH . J 5 HOH B 21 830 830 HOH HOH . J 5 HOH B 22 831 831 HOH HOH . J 5 HOH B 23 832 832 HOH HOH . J 5 HOH B 24 834 834 HOH HOH . J 5 HOH B 25 835 835 HOH HOH . J 5 HOH B 26 838 838 HOH HOH . J 5 HOH B 27 839 839 HOH HOH . J 5 HOH B 28 840 840 HOH HOH . J 5 HOH B 29 841 841 HOH HOH . J 5 HOH B 30 842 842 HOH HOH . J 5 HOH B 31 843 843 HOH HOH . J 5 HOH B 32 845 845 HOH HOH . J 5 HOH B 33 850 850 HOH HOH . J 5 HOH B 34 851 851 HOH HOH . J 5 HOH B 35 852 852 HOH HOH . J 5 HOH B 36 854 854 HOH HOH . J 5 HOH B 37 855 855 HOH HOH . J 5 HOH B 38 856 856 HOH HOH . J 5 HOH B 39 858 858 HOH HOH . J 5 HOH B 40 863 863 HOH HOH . J 5 HOH B 41 864 864 HOH HOH . J 5 HOH B 42 865 865 HOH HOH . J 5 HOH B 43 866 866 HOH HOH . J 5 HOH B 44 869 869 HOH HOH . J 5 HOH B 45 870 870 HOH HOH . J 5 HOH B 46 875 875 HOH HOH . J 5 HOH B 47 883 883 HOH HOH . J 5 HOH B 48 884 884 HOH HOH . J 5 HOH B 49 888 888 HOH HOH . J 5 HOH B 50 894 894 HOH HOH . J 5 HOH B 51 895 895 HOH HOH . J 5 HOH B 52 898 898 HOH HOH . J 5 HOH B 53 899 899 HOH HOH . J 5 HOH B 54 900 900 HOH HOH . J 5 HOH B 55 904 904 HOH HOH . J 5 HOH B 56 905 905 HOH HOH . J 5 HOH B 57 906 906 HOH HOH . J 5 HOH B 58 907 907 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . E 4 12.805 18.476 31.119 1 33.79 ? N1 CB3 302 A 1 HETATM 2 C C2 CB3 . . . E 4 12.581 19.257 32.203 1 33.46 ? C2 CB3 302 A 1 HETATM 3 N NA2 CB3 . . . E 4 11.609 20.158 32.21 1 34.09 ? NA2 CB3 302 A 1 HETATM 4 N N3 CB3 . . . E 4 13.366 19.164 33.278 1 32.66 ? N3 CB3 302 A 1 HETATM 5 C C4 CB3 . . . E 4 14.397 18.311 33.312 1 32.17 ? C4 CB3 302 A 1 HETATM 6 O O4 CB3 . . . E 4 15.236 18.36 34.395 1 33.48 ? O4 CB3 302 A 1 HETATM 7 C C4A CB3 . . . E 4 14.633 17.436 32.246 1 33.21 ? C4A CB3 302 A 1 HETATM 8 C C5 CB3 . . . E 4 15.621 16.445 32.292 1 32.37 ? C5 CB3 302 A 1 HETATM 9 C C6 CB3 . . . E 4 15.86 15.614 31.183 1 32.42 ? C6 CB3 302 A 1 HETATM 10 C C7 CB3 . . . E 4 15.104 15.814 30.014 1 32.43 ? C7 CB3 302 A 1 HETATM 11 C C8 CB3 . . . E 4 14.095 16.791 29.973 1 32.41 ? C8 CB3 302 A 1 HETATM 12 C C8A CB3 . . . E 4 13.826 17.583 31.098 1 32.82 ? C8A CB3 302 A 1 HETATM 13 C C9 CB3 . . . E 4 16.631 14.352 31.306 1 32.97 ? C9 CB3 302 A 1 HETATM 14 N N10 CB3 . . . E 4 16.995 13.891 32.672 1 34.13 ? N10 CB3 302 A 1 HETATM 15 C C11 CB3 . . . E 4 14.222 13.26 35.786 1 43.15 ? C11 CB3 302 A 1 HETATM 16 C C12 CB3 . . . E 4 13.841 13.11 34.442 1 40.86 ? C12 CB3 302 A 1 HETATM 17 C C13 CB3 . . . E 4 14.768 13.313 33.41 1 38.61 ? C13 CB3 302 A 1 HETATM 18 C C14 CB3 . . . E 4 16.107 13.675 33.689 1 36.77 ? C14 CB3 302 A 1 HETATM 19 C C15 CB3 . . . E 4 16.481 13.83 35.04 1 37.91 ? C15 CB3 302 A 1 HETATM 20 C C16 CB3 . . . E 4 15.551 13.626 36.076 1 40.11 ? C16 CB3 302 A 1 HETATM 21 C C CB3 . . . E 4 13.247 13.019 36.848 1 47.17 ? C CB3 302 A 1 HETATM 22 O O CB3 . . . E 4 12.029 13.004 36.65 1 45.36 ? O CB3 302 A 1 HETATM 23 N N CB3 . . . E 4 13.715 12.83 38.083 1 51.21 ? N CB3 302 A 1 HETATM 24 C CA CB3 . . . E 4 13.435 11.655 38.939 1 56.74 ? CA CB3 302 A 1 HETATM 25 C CB CB3 . . . E 4 12.741 12.277 40.163 1 59.75 ? CB CB3 302 A 1 HETATM 26 C CG CB3 . . . E 4 13.53 12.065 41.467 1 65.4 ? CG CB3 302 A 1 HETATM 27 C CD CB3 . . . E 4 15.034 12.385 41.447 1 68.76 ? CD CB3 302 A 1 HETATM 28 O OE1 CB3 . . . E 4 15.838 11.536 41.877 1 68.78 ? OE1 CB3 302 A 1 HETATM 29 O OE2 CB3 . . . E 4 15.401 13.488 41.021 1 71.11 ? OE2 CB3 302 A 1 HETATM 30 C CT CB3 . . . E 4 12.705 10.407 38.379 1 59.4 ? CT CB3 302 A 1 HETATM 31 O O1 CB3 . . . E 4 11.5 10.201 38.607 1 61.76 ? O1 CB3 302 A 1 HETATM 32 O O2 CB3 . . . E 4 13.385 9.597 37.727 1 60.86 ? O2 CB3 302 A 1 HETATM 33 C CP1 CB3 . . . E 4 18.437 13.759 32.864 1 30.01 ? CP1 CB3 302 A 1 HETATM 34 C CP2 CB3 . . . E 4 18.895 14.954 33.551 1 27.58 ? CP2 CB3 302 A 1 HETATM 35 C CP3 CB3 . . . E 4 19.185 15.989 34.082 1 25.99 ? CP3 CB3 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #