data_1TF2 # _model_server_result.job_id rng7DniEMWpzqFXHSOaXvQ _model_server_result.datetime_utc '2025-04-21 17:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":843}' # _entry.id 1TF2 # _exptl.entry_id 1TF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.96 _cell.angle_gamma 90 _cell.entry_id 1TF2 _cell.length_a 149.232 _cell.length_b 107.189 _cell.length_c 72.054 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 210 A ASP 207 1_555 B MG MG . A MG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc2 B MG MG . A MG 842 1_555 C O1B ADP . A ADP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc3 B MG MG . A MG 842 1_555 D O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc4 B MG MG . A MG 842 1_555 D O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1TF2 _atom_sites.fract_transf_matrix[1][1] 0.006701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 842 4 MG MG2 . C 3 ADP A 1 843 1 ADP ADP . D 4 HOH A 1 2000 2000 HOH HOH . D 4 HOH A 2 2001 2001 HOH HOH . D 4 HOH A 3 2002 2002 HOH HOH . D 4 HOH A 4 2003 2003 HOH HOH . D 4 HOH A 5 2004 2004 HOH HOH . D 4 HOH A 6 2007 2007 HOH HOH . D 4 HOH A 7 2008 2008 HOH HOH . D 4 HOH A 8 2012 2012 HOH HOH . D 4 HOH A 9 2013 2013 HOH HOH . D 4 HOH A 10 2014 2014 HOH HOH . D 4 HOH A 11 2016 2016 HOH HOH . D 4 HOH A 12 2017 2017 HOH HOH . D 4 HOH A 13 2018 2018 HOH HOH . D 4 HOH A 14 2019 2019 HOH HOH . D 4 HOH A 15 2021 2021 HOH HOH . D 4 HOH A 16 2022 2022 HOH HOH . D 4 HOH A 17 2023 2023 HOH HOH . D 4 HOH A 18 2025 2025 HOH HOH . D 4 HOH A 19 2026 2026 HOH HOH . D 4 HOH A 20 2027 2027 HOH HOH . D 4 HOH A 21 2028 2028 HOH HOH . D 4 HOH A 22 2029 2029 HOH HOH . D 4 HOH A 23 2030 2030 HOH HOH . D 4 HOH A 24 2034 2034 HOH HOH . D 4 HOH A 25 2036 2036 HOH HOH . D 4 HOH A 26 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 56.423 -24.695 13.277 1 68.47 ? PB ADP 843 A 1 HETATM 2 O O1B ADP . . . C 3 56.734 -23.288 13.573 1 68.58 ? O1B ADP 843 A 1 HETATM 3 O O2B ADP . . . C 3 56.958 -25.575 14.354 1 68.61 ? O2B ADP 843 A 1 HETATM 4 O O3B ADP . . . C 3 54.986 -25.013 13.214 1 68.97 ? O3B ADP 843 A 1 HETATM 5 P PA ADP . . . C 3 58.569 -24.97 11.678 1 67.07 ? PA ADP 843 A 1 HETATM 6 O O1A ADP . . . C 3 59.353 -24.383 12.794 1 65.35 ? O1A ADP 843 A 1 HETATM 7 O O2A ADP . . . C 3 58.533 -24.163 10.425 1 66.46 ? O2A ADP 843 A 1 HETATM 8 O O3A ADP . . . C 3 57.104 -25.123 12.003 1 68.59 ? O3A ADP 843 A 1 HETATM 9 O O5' ADP . . . C 3 59.091 -26.294 11.299 1 65.5 ? O5' ADP 843 A 1 HETATM 10 C C5' ADP . . . C 3 59.288 -27.39 12.163 1 66.91 ? C5' ADP 843 A 1 HETATM 11 C C4' ADP . . . C 3 59.884 -28.548 11.339 1 69.14 ? C4' ADP 843 A 1 HETATM 12 O O4' ADP . . . C 3 59.041 -28.899 10.192 1 71.22 ? O4' ADP 843 A 1 HETATM 13 C C3' ADP . . . C 3 61.257 -28.166 10.785 1 69.03 ? C3' ADP 843 A 1 HETATM 14 O O3' ADP . . . C 3 62.175 -29.224 11.042 1 67.57 ? O3' ADP 843 A 1 HETATM 15 C C2' ADP . . . C 3 60.981 -27.949 9.308 1 69.87 ? C2' ADP 843 A 1 HETATM 16 O O2' ADP . . . C 3 62.191 -28.125 8.589 1 70.53 ? O2' ADP 843 A 1 HETATM 17 C C1' ADP . . . C 3 59.921 -29.022 9.037 1 71.48 ? C1' ADP 843 A 1 HETATM 18 N N9 ADP . . . C 3 59.157 -28.781 7.754 1 73.14 ? N9 ADP 843 A 1 HETATM 19 C C8 ADP . . . C 3 58.348 -27.687 7.468 1 74.25 ? C8 ADP 843 A 1 HETATM 20 N N7 ADP . . . C 3 57.819 -27.783 6.262 1 74.42 ? N7 ADP 843 A 1 HETATM 21 C C5 ADP . . . C 3 58.272 -28.974 5.696 1 75.53 ? C5 ADP 843 A 1 HETATM 22 C C6 ADP . . . C 3 58.076 -29.645 4.46 1 74.98 ? C6 ADP 843 A 1 HETATM 23 N N6 ADP . . . C 3 57.289 -29.117 3.517 1 75.39 ? N6 ADP 843 A 1 HETATM 24 N N1 ADP . . . C 3 58.705 -30.852 4.23 1 73.4 ? N1 ADP 843 A 1 HETATM 25 C C2 ADP . . . C 3 59.511 -31.427 5.159 1 73.29 ? C2 ADP 843 A 1 HETATM 26 N N3 ADP . . . C 3 59.705 -30.809 6.331 1 73.63 ? N3 ADP 843 A 1 HETATM 27 C C4 ADP . . . C 3 59.114 -29.606 6.639 1 74.56 ? C4 ADP 843 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #