data_1TFM # _model_server_result.job_id JCCTDwWKD9_RjnD13mE9zQ _model_server_result.datetime_utc '2024-10-25 20:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":267}' # _entry.id 1TFM # _exptl.entry_id 1TFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 9 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TFM _cell.length_a 109.422 _cell.length_b 109.422 _cell.length_c 309.798 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 6 2 1 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 5 NAG 4 n D NAG 1 D 1 NAG D 2 NAG 4 n D NAG 2 D 2 NAG D 6 NAG 4 n D BMA 3 D 3 BMA D 8 BMA 4 n D BMA 4 D 4 BMA D 9 BMA 5 n E NAG 1 E 1 NAG E 4 NAG 5 n E NAG 2 E 2 NAG E 7 NAG 5 n E BMA 3 E 3 BMA E 10 BMA 6 n F BGC 1 F 1 BGC F 11 BGC 6 n F GAL 2 F 2 GAL F 12 GLB # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 240 A CYS 240 1_555 B SG CYS 1 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 60 B CYS 60 1_555 B SG CYS 77 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 148 B CYS 148 1_555 B SG CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 202 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 107 A ASN 107 1_555 G C1 NAG . A NAG 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 B ND2 ASN 57 B ASN 57 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 B ND2 ASN 92 B ASN 92 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B ND2 ASN 132 B ASN 132 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 D O3 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale11 F O4 BGC . F BGC 1 1_555 F C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 131 n n C1 O1 GAL sing 132 n n C1 O5 GAL sing 133 n n C1 H1 GAL sing 134 n n C2 C3 GAL sing 135 n n C2 O2 GAL sing 136 n n C2 H2 GAL sing 137 n n C3 C4 GAL sing 138 n n C3 O3 GAL sing 139 n n C3 H3 GAL sing 140 n n C4 C5 GAL sing 141 n n C4 O4 GAL sing 142 n n C4 H4 GAL sing 143 n n C5 C6 GAL sing 144 n n C5 O5 GAL sing 145 n n C5 H5 GAL sing 146 n n C6 O6 GAL sing 147 n n C6 H61 GAL sing 148 n n C6 H62 GAL sing 149 n n O1 HO1 GAL sing 150 n n O2 HO2 GAL sing 151 n n O3 HO3 GAL sing 152 n n O4 HO4 GAL sing 153 n n O6 HO6 GAL sing 154 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TFM _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0.005276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 241 203 NAG NAG . H 8 P6C A 1 242 201 P6C P6C . I 9 GAL B 1 267 213 GAL GLB . J 10 HOH A 1 243 1 HOH HOH . J 10 HOH A 2 244 2 HOH HOH . J 10 HOH A 3 245 3 HOH HOH . J 10 HOH A 4 246 4 HOH HOH . J 10 HOH A 5 247 5 HOH HOH . J 10 HOH A 6 248 6 HOH HOH . J 10 HOH A 7 249 7 HOH HOH . J 10 HOH A 8 250 19 HOH HOH . J 10 HOH A 9 251 23 HOH HOH . J 10 HOH A 10 252 24 HOH HOH . J 10 HOH A 11 253 26 HOH HOH . J 10 HOH A 12 254 27 HOH HOH . J 10 HOH A 13 255 28 HOH HOH . J 10 HOH A 14 256 29 HOH HOH . J 10 HOH A 15 257 31 HOH HOH . J 10 HOH A 16 258 41 HOH HOH . J 10 HOH A 17 259 42 HOH HOH . J 10 HOH A 18 260 43 HOH HOH . J 10 HOH A 19 261 44 HOH HOH . J 10 HOH A 20 262 46 HOH HOH . J 10 HOH A 21 263 48 HOH HOH . J 10 HOH A 22 264 49 HOH HOH . J 10 HOH A 23 265 51 HOH HOH . J 10 HOH A 24 266 53 HOH HOH . J 10 HOH A 25 267 54 HOH HOH . J 10 HOH A 26 268 55 HOH HOH . J 10 HOH A 27 269 56 HOH HOH . J 10 HOH A 28 270 57 HOH HOH . J 10 HOH A 29 271 58 HOH HOH . J 10 HOH A 30 272 61 HOH HOH . J 10 HOH A 31 273 62 HOH HOH . J 10 HOH A 32 274 64 HOH HOH . J 10 HOH A 33 275 65 HOH HOH . J 10 HOH A 34 276 66 HOH HOH . J 10 HOH A 35 277 67 HOH HOH . J 10 HOH A 36 278 68 HOH HOH . J 10 HOH A 37 279 70 HOH HOH . J 10 HOH A 38 280 72 HOH HOH . J 10 HOH A 39 281 74 HOH HOH . J 10 HOH A 40 282 78 HOH HOH . J 10 HOH A 41 283 79 HOH HOH . J 10 HOH A 42 284 83 HOH HOH . J 10 HOH A 43 285 89 HOH HOH . J 10 HOH A 44 286 90 HOH HOH . J 10 HOH A 45 287 91 HOH HOH . J 10 HOH A 46 288 93 HOH HOH . J 10 HOH A 47 289 103 HOH HOH . J 10 HOH A 48 290 106 HOH HOH . J 10 HOH A 49 291 108 HOH HOH . J 10 HOH A 50 292 110 HOH HOH . J 10 HOH A 51 293 111 HOH HOH . K 10 HOH B 1 268 9 HOH HOH . K 10 HOH B 2 269 10 HOH HOH . K 10 HOH B 3 270 11 HOH HOH . K 10 HOH B 4 271 12 HOH HOH . K 10 HOH B 5 272 13 HOH HOH . K 10 HOH B 6 273 14 HOH HOH . K 10 HOH B 7 274 15 HOH HOH . K 10 HOH B 8 275 16 HOH HOH . K 10 HOH B 9 276 17 HOH HOH . K 10 HOH B 10 277 18 HOH HOH . K 10 HOH B 11 278 20 HOH HOH . K 10 HOH B 12 279 22 HOH HOH . K 10 HOH B 13 280 30 HOH HOH . K 10 HOH B 14 281 32 HOH HOH . K 10 HOH B 15 282 33 HOH HOH . K 10 HOH B 16 283 34 HOH HOH . K 10 HOH B 17 284 35 HOH HOH . K 10 HOH B 18 285 36 HOH HOH . K 10 HOH B 19 286 37 HOH HOH . K 10 HOH B 20 287 38 HOH HOH . K 10 HOH B 21 288 40 HOH HOH . K 10 HOH B 22 289 45 HOH HOH . K 10 HOH B 23 290 47 HOH HOH . K 10 HOH B 24 291 50 HOH HOH . K 10 HOH B 25 292 52 HOH HOH . K 10 HOH B 26 293 59 HOH HOH . K 10 HOH B 27 294 60 HOH HOH . K 10 HOH B 28 295 69 HOH HOH . K 10 HOH B 29 296 73 HOH HOH . K 10 HOH B 30 297 75 HOH HOH . K 10 HOH B 31 298 76 HOH HOH . K 10 HOH B 32 299 77 HOH HOH . K 10 HOH B 33 300 80 HOH HOH . K 10 HOH B 34 301 81 HOH HOH . K 10 HOH B 35 302 82 HOH HOH . K 10 HOH B 36 303 84 HOH HOH . K 10 HOH B 37 304 85 HOH HOH . K 10 HOH B 38 305 86 HOH HOH . K 10 HOH B 39 306 87 HOH HOH . K 10 HOH B 40 307 88 HOH HOH . K 10 HOH B 41 308 92 HOH HOH . K 10 HOH B 42 309 94 HOH HOH . K 10 HOH B 43 310 95 HOH HOH . K 10 HOH B 44 311 97 HOH HOH . K 10 HOH B 45 312 98 HOH HOH . K 10 HOH B 46 313 99 HOH HOH . K 10 HOH B 47 314 100 HOH HOH . K 10 HOH B 48 315 101 HOH HOH . K 10 HOH B 49 316 102 HOH HOH . K 10 HOH B 50 317 104 HOH HOH . K 10 HOH B 51 318 105 HOH HOH . K 10 HOH B 52 319 107 HOH HOH . K 10 HOH B 53 320 109 HOH HOH . K 10 HOH B 54 321 112 HOH HOH . K 10 HOH B 55 322 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . I 9 56.695 31.223 -20.625 1 84.67 ? C1 GAL 267 B 1 HETATM 2 C C2 GAL . . . I 9 57.673 30.616 -19.61 1 74.12 ? C2 GAL 267 B 1 HETATM 3 C C3 GAL . . . I 9 59.066 31.126 -19.932 1 84.81 ? C3 GAL 267 B 1 HETATM 4 C C4 GAL . . . I 9 59.41 31.141 -21.43 1 68.49 ? C4 GAL 267 B 1 HETATM 5 C C5 GAL . . . I 9 58.279 31.521 -22.383 1 83.54 ? C5 GAL 267 B 1 HETATM 6 C C6 GAL . . . I 9 58.664 31.128 -23.817 1 71.56 ? C6 GAL 267 B 1 HETATM 7 O O2 GAL . . . I 9 57.383 30.889 -18.241 1 90.58 ? O2 GAL 267 B 1 HETATM 8 O O3 GAL . . . I 9 60.009 30.413 -19.132 1 100.62 ? O3 GAL 267 B 1 HETATM 9 O O4 GAL . . . I 9 59.888 29.884 -21.863 1 93.75 ? O4 GAL 267 B 1 HETATM 10 O O5 GAL . . . I 9 57.072 30.781 -21.988 1 2 ? O5 GAL 267 B 1 HETATM 11 O O6 GAL . . . I 9 59.304 29.868 -23.751 1 87.65 ? O6 GAL 267 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #