data_1TFX # _model_server_result.job_id qzmN7ApJKBbiKUQRUEZtUw _model_server_result.datetime_utc '2024-11-22 09:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":4007}' # _entry.id 1TFX # _exptl.entry_id 1TFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TFX _cell.length_a 41.9 _cell.length_b 96.2 _cell.length_c 137.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 7 B CYS 22 1_555 B SG CYS 137 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? disulf ? disulf8 B SG CYS 109 B CYS 128 1_555 B SG CYS 210 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? disulf ? disulf9 B SG CYS 116 B CYS 136 1_555 B SG CYS 183 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? disulf ? disulf10 B SG CYS 148 B CYS 168 1_555 B SG CYS 162 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? disulf ? disulf11 B SG CYS 173 B CYS 191 1_555 B SG CYS 197 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? disulf ? disulf12 C SG CYS 5 C CYS 5 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 C SG CYS 14 C CYS 14 1_555 C SG CYS 38 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 C SG CYS 30 C CYS 30 1_555 C SG CYS 51 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 D SG CYS 14 D CYS 14 1_555 D SG CYS 38 D CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 E CA CA . A CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 E CA CA . A CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 E CA CA . A CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 E CA CA . A CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 E CA CA . A CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 E CA CA . A CA 1007 1_555 G O HOH . A HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.253 ? metalc ? metalc7 B OE1 GLU 52 B GLU 70 1_555 F CA CA . B CA 4007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 B O ASN 54 B ASN 72 1_555 F CA CA . B CA 4007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 B O VAL 57 B VAL 75 1_555 F CA CA . B CA 4007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 B OE1 GLU 59 B GLU 77 1_555 F CA CA . B CA 4007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc11 B OE2 GLU 62 B GLU 80 1_555 F CA CA . B CA 4007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc12 F CA CA . B CA 4007 1_555 H O HOH . B HOH 5053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TFX _atom_sites.fract_transf_matrix[1][1] 0.023866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 1007 1007 CA CA . F 3 CA B 1 4007 4007 CA CA . G 4 HOH A 1 412 412 HOH HOH . G 4 HOH A 2 421 421 HOH HOH . G 4 HOH A 3 434 434 HOH HOH . G 4 HOH A 4 436 436 HOH HOH . G 4 HOH A 5 446 446 HOH HOH . G 4 HOH A 6 450 450 HOH HOH . G 4 HOH A 7 451 451 HOH HOH . G 4 HOH A 8 454 454 HOH HOH . G 4 HOH A 9 458 458 HOH HOH . G 4 HOH A 10 463 463 HOH HOH . G 4 HOH A 11 464 464 HOH HOH . G 4 HOH A 12 468 468 HOH HOH . G 4 HOH A 13 473 473 HOH HOH . G 4 HOH A 14 475 475 HOH HOH . G 4 HOH A 15 476 476 HOH HOH . G 4 HOH A 16 511 511 HOH HOH . G 4 HOH A 17 512 512 HOH HOH . G 4 HOH A 18 513 513 HOH HOH . G 4 HOH A 19 516 516 HOH HOH . G 4 HOH A 20 519 519 HOH HOH . G 4 HOH A 21 520 520 HOH HOH . G 4 HOH A 22 524 524 HOH HOH . G 4 HOH A 23 525 525 HOH HOH . G 4 HOH A 24 538 538 HOH HOH . G 4 HOH A 25 543 543 HOH HOH . G 4 HOH A 26 544 544 HOH HOH . G 4 HOH A 27 1038 1038 HOH HOH . G 4 HOH A 28 1055 1055 HOH HOH . G 4 HOH A 29 1073 1073 HOH HOH . G 4 HOH A 30 1085 1085 HOH HOH . G 4 HOH A 31 2002 2002 HOH HOH . G 4 HOH A 32 2006 2006 HOH HOH . G 4 HOH A 33 2007 2007 HOH HOH . G 4 HOH A 34 2010 2010 HOH HOH . G 4 HOH A 35 2018 2018 HOH HOH . G 4 HOH A 36 2022 2022 HOH HOH . G 4 HOH A 37 2023 2023 HOH HOH . G 4 HOH A 38 2025 2025 HOH HOH . G 4 HOH A 39 2028 2028 HOH HOH . G 4 HOH A 40 2031 2031 HOH HOH . G 4 HOH A 41 2034 2034 HOH HOH . G 4 HOH A 42 2037 2037 HOH HOH . G 4 HOH A 43 2038 2038 HOH HOH . G 4 HOH A 44 2040 2040 HOH HOH . G 4 HOH A 45 2041 2041 HOH HOH . G 4 HOH A 46 2043 2043 HOH HOH . G 4 HOH A 47 2046 2046 HOH HOH . G 4 HOH A 48 2047 2047 HOH HOH . G 4 HOH A 49 2051 2051 HOH HOH . G 4 HOH A 50 2053 2053 HOH HOH . G 4 HOH A 51 2055 2055 HOH HOH . G 4 HOH A 52 2058 2058 HOH HOH . G 4 HOH A 53 2062 2062 HOH HOH . G 4 HOH A 54 2063 2063 HOH HOH . G 4 HOH A 55 2070 2070 HOH HOH . G 4 HOH A 56 2084 2084 HOH HOH . G 4 HOH A 57 2086 2086 HOH HOH . G 4 HOH A 58 2154 2154 HOH HOH . G 4 HOH A 59 3002 3002 HOH HOH . G 4 HOH A 60 3003 3003 HOH HOH . G 4 HOH A 61 3005 3005 HOH HOH . G 4 HOH A 62 3009 3009 HOH HOH . G 4 HOH A 63 3011 3011 HOH HOH . G 4 HOH A 64 3018 3018 HOH HOH . G 4 HOH A 65 3040 3040 HOH HOH . G 4 HOH A 66 3049 3049 HOH HOH . G 4 HOH A 67 3059 3059 HOH HOH . H 4 HOH B 1 400 400 HOH HOH . H 4 HOH B 2 401 401 HOH HOH . H 4 HOH B 3 402 402 HOH HOH . H 4 HOH B 4 403 403 HOH HOH . H 4 HOH B 5 404 404 HOH HOH . H 4 HOH B 6 408 408 HOH HOH . H 4 HOH B 7 410 410 HOH HOH . H 4 HOH B 8 413 413 HOH HOH . H 4 HOH B 9 423 423 HOH HOH . H 4 HOH B 10 437 437 HOH HOH . H 4 HOH B 11 442 442 HOH HOH . H 4 HOH B 12 443 443 HOH HOH . H 4 HOH B 13 452 452 HOH HOH . H 4 HOH B 14 457 457 HOH HOH . H 4 HOH B 15 459 459 HOH HOH . H 4 HOH B 16 465 465 HOH HOH . H 4 HOH B 17 466 466 HOH HOH . H 4 HOH B 18 469 469 HOH HOH . H 4 HOH B 19 471 471 HOH HOH . H 4 HOH B 20 472 472 HOH HOH . H 4 HOH B 21 501 501 HOH HOH . H 4 HOH B 22 505 505 HOH HOH . H 4 HOH B 23 506 506 HOH HOH . H 4 HOH B 24 509 509 HOH HOH . H 4 HOH B 25 510 510 HOH HOH . H 4 HOH B 26 514 514 HOH HOH . H 4 HOH B 27 515 515 HOH HOH . H 4 HOH B 28 517 517 HOH HOH . H 4 HOH B 29 533 533 HOH HOH . H 4 HOH B 30 537 537 HOH HOH . H 4 HOH B 31 4038 4038 HOH HOH . H 4 HOH B 32 4073 4073 HOH HOH . H 4 HOH B 33 4085 4085 HOH HOH . H 4 HOH B 34 5006 5006 HOH HOH . H 4 HOH B 35 5007 5007 HOH HOH . H 4 HOH B 36 5010 5010 HOH HOH . H 4 HOH B 37 5018 5018 HOH HOH . H 4 HOH B 38 5022 5022 HOH HOH . H 4 HOH B 39 5028 5028 HOH HOH . H 4 HOH B 40 5031 5031 HOH HOH . H 4 HOH B 41 5033 5033 HOH HOH . H 4 HOH B 42 5037 5037 HOH HOH . H 4 HOH B 43 5040 5040 HOH HOH . H 4 HOH B 44 5041 5041 HOH HOH . H 4 HOH B 45 5043 5043 HOH HOH . H 4 HOH B 46 5046 5046 HOH HOH . H 4 HOH B 47 5051 5051 HOH HOH . H 4 HOH B 48 5053 5053 HOH HOH . H 4 HOH B 49 5058 5058 HOH HOH . H 4 HOH B 50 5070 5070 HOH HOH . H 4 HOH B 51 5086 5086 HOH HOH . H 4 HOH B 52 5090 5090 HOH HOH . H 4 HOH B 53 5096 5096 HOH HOH . H 4 HOH B 54 5154 5154 HOH HOH . H 4 HOH B 55 6005 6005 HOH HOH . I 4 HOH C 1 407 407 HOH HOH . I 4 HOH C 2 411 411 HOH HOH . I 4 HOH C 3 418 418 HOH HOH . I 4 HOH C 4 424 424 HOH HOH . I 4 HOH C 5 425 425 HOH HOH . I 4 HOH C 6 448 448 HOH HOH . I 4 HOH C 7 449 449 HOH HOH . I 4 HOH C 8 456 456 HOH HOH . I 4 HOH C 9 518 518 HOH HOH . I 4 HOH C 10 530 530 HOH HOH . I 4 HOH C 11 531 531 HOH HOH . J 4 HOH D 1 405 405 HOH HOH . J 4 HOH D 2 406 406 HOH HOH . J 4 HOH D 3 409 409 HOH HOH . J 4 HOH D 4 430 430 HOH HOH . J 4 HOH D 5 431 431 HOH HOH . J 4 HOH D 6 438 438 HOH HOH . J 4 HOH D 7 504 504 HOH HOH . J 4 HOH D 8 523 523 HOH HOH . J 4 HOH D 9 526 526 HOH HOH . J 4 HOH D 10 5062 5062 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.119 _atom_site.Cartn_y 64.405 _atom_site.Cartn_z 31.153 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 4007 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #